Wall clock time and date at job start Wed Apr 1 2020 04:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47162 * 2 1 4 4 N 1.46897 * 109.47058 * 179.97438 * 3 2 1 5 5 C 1.48556 * 111.00183 * 285.41783 * 4 3 2 6 6 C 1.54377 * 104.59551 * 200.95743 * 5 4 3 7 7 C 1.54266 * 105.05953 * 23.85656 * 6 5 4 8 8 C 1.48561 * 110.99846 * 170.00040 * 4 3 2 9 9 H 1.09001 * 110.51275 * 40.21474 * 8 4 3 10 10 C 1.50706 * 110.41185 * 277.82133 * 8 4 3 11 11 O 1.21287 * 119.99827 * 3.37592 * 10 8 4 12 12 N 1.34768 * 119.99940 * 183.37407 * 10 8 4 13 13 C 1.46500 * 120.00052 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47610 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47061 * 295.00038 * 14 13 12 16 16 N 1.46502 * 109.47485 * 54.99091 * 14 13 12 17 17 C 1.36939 * 119.99107 * 55.86955 * 16 14 13 18 18 H 1.07999 * 120.00718 * 5.59030 * 17 16 14 19 19 C 1.38813 * 119.99664 * 185.59498 * 17 16 14 20 20 N 1.31615 * 120.00131 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00262 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46760 * 59.99843 * 21 19 17 23 23 H 1.48498 * 109.47488 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46848 * 300.00252 * 21 19 17 25 25 C 1.50696 * 109.47686 * 175.00021 * 14 13 12 26 26 C 1.38234 * 119.99795 * 26.64851 * 25 14 13 27 27 C 1.38238 * 119.99718 * 179.97438 * 26 25 14 28 28 C 1.38235 * 120.00004 * 359.97438 * 27 26 25 29 29 C 1.38226 * 120.00337 * 359.97438 * 28 27 26 30 30 C 1.38236 * 120.00137 * 206.56340 * 25 14 13 31 31 H 1.08998 * 109.46800 * 60.00074 * 1 2 3 32 32 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46791 * 300.00141 * 1 2 3 34 34 H 1.08995 * 109.46898 * 239.99566 * 2 1 3 35 35 H 1.08998 * 109.46800 * 119.99926 * 2 1 3 36 36 H 1.09000 * 109.46893 * 60.00084 * 3 2 1 37 37 H 1.08995 * 109.46838 * 300.00540 * 3 2 1 38 38 H 1.09007 * 110.40945 * 82.17954 * 5 4 3 39 39 H 1.08993 * 110.51454 * 319.78992 * 5 4 3 40 40 H 1.09003 * 110.32652 * 264.96217 * 6 5 4 41 41 H 1.09001 * 110.41067 * 142.79717 * 6 5 4 42 42 H 1.08999 * 110.32023 * 241.10087 * 7 6 5 43 43 H 1.08993 * 110.40978 * 118.93740 * 7 6 5 44 44 H 0.96996 * 120.00109 * 0.02562 * 12 10 8 45 45 H 1.09001 * 109.47230 * 59.99532 * 13 12 10 46 46 H 1.09002 * 109.46862 * 299.99946 * 13 12 10 47 47 H 0.96998 * 120.00478 * 235.86979 * 16 14 13 48 48 H 0.97005 * 120.00586 * 180.02562 * 20 19 17 49 49 H 1.08002 * 120.00143 * 0.25936 * 26 25 14 50 50 H 1.08005 * 119.99481 * 179.97438 * 27 26 25 51 51 H 1.08003 * 119.99786 * 179.97438 * 28 27 26 52 52 H 1.07994 * 120.00522 * 179.97438 * 29 28 27 53 53 H 1.07996 * 119.99784 * 0.07933 * 30 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0409 1.0740 1.3379 6 6 5.4828 1.6254 1.3485 7 6 5.4832 2.7665 0.3104 8 6 4.0415 2.8083 -0.2402 9 1 3.4504 3.5492 0.2982 10 6 4.0511 3.1162 -1.7154 11 8 3.5991 2.3143 -2.5052 12 7 4.5617 4.2826 -2.1571 13 6 4.5705 4.5822 -3.5911 14 6 5.2002 5.9574 -3.8211 15 1 4.5713 6.7250 -3.3700 16 7 6.5305 5.9941 -3.2085 17 6 7.4705 5.0613 -3.5569 18 1 7.2635 4.3550 -4.3473 19 6 8.6896 5.0234 -2.8941 20 7 8.9421 5.8843 -1.9311 21 14 9.9718 3.7505 -3.3688 22 1 10.3443 3.9313 -4.7950 23 1 11.1767 3.9203 -2.5176 24 1 9.4137 2.3885 -3.1717 25 6 5.3215 6.2133 -5.3012 26 6 4.4522 5.5981 -6.1825 27 6 4.5631 5.8333 -7.5402 28 6 5.5430 6.6840 -8.0165 29 6 6.4117 7.3000 -7.1352 30 6 6.3010 7.0646 -5.7775 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 4.0473 -0.0093 1.4591 39 1 3.4497 1.5403 2.1258 40 1 6.1879 0.8474 1.0561 41 1 5.7346 2.0120 2.3361 42 1 6.1886 2.5484 -0.4915 43 1 5.7340 3.7140 0.7871 44 1 4.9234 4.9238 -1.5255 45 1 3.5479 4.5827 -3.9684 46 1 5.1514 3.8244 -4.1170 47 1 6.7454 6.6790 -2.5561 48 1 9.7941 5.8581 -1.4681 49 1 3.6834 4.9374 -5.8099 50 1 3.8841 5.3523 -8.2287 51 1 5.6300 6.8674 -9.0773 52 1 7.1775 7.9643 -7.5073 53 1 6.9801 7.5453 -5.0889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267520250.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:32 Heat of formation + Delta-G solvation = -14.636626 kcal Electronic energy + Delta-G solvation = -31188.528586 eV Core-core repulsion = 27252.191687 eV Total energy + Delta-G solvation = -3936.336899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.23836 -40.29133 -39.02449 -37.32465 -35.54143 -34.98804 -33.61488 -31.82187 -31.72581 -31.06809 -30.65096 -28.35626 -26.46237 -26.16667 -24.21744 -23.37180 -22.79571 -22.60655 -21.42172 -21.29057 -20.76522 -19.28674 -18.29161 -17.73371 -17.23979 -16.86748 -16.70296 -16.18819 -16.12151 -15.81902 -15.68894 -15.52552 -15.19600 -14.97233 -14.79983 -14.41140 -14.13873 -14.09608 -13.87419 -13.82046 -13.57186 -13.45788 -13.42627 -13.01503 -12.87680 -12.73122 -12.57131 -12.52056 -12.24535 -12.15678 -12.06943 -11.92934 -11.83607 -11.80441 -11.57849 -11.49920 -11.45748 -10.99010 -10.67790 -9.87248 -9.65603 -9.47943 -9.41700 -8.98618 -7.90525 -5.17176 0.60682 0.67801 1.42643 1.45023 1.49323 1.74219 2.24043 2.56177 3.03114 3.07863 3.42817 3.60750 3.62406 3.87266 3.93887 4.03028 4.05660 4.14888 4.20135 4.21509 4.27135 4.28489 4.34466 4.42244 4.48485 4.49863 4.53436 4.57428 4.69715 4.71484 4.75699 4.85752 4.88660 4.92304 4.92780 5.03580 5.13369 5.14126 5.17208 5.21463 5.25949 5.32335 5.32809 5.40147 5.57169 5.61431 5.73249 5.76938 5.82474 5.96122 6.10733 6.27816 6.31990 6.74310 7.40303 7.41560 8.05267 8.35108 9.30617 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.003542 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.813383 B = 7903.467106 C =10039.824836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.051 3.949 4 N -0.513 5.513 5 C 0.038 3.962 6 C -0.119 4.119 7 C -0.112 4.112 8 C 0.053 3.947 9 H 0.096 0.904 10 C 0.515 3.485 11 O -0.575 6.575 12 N -0.699 5.699 13 C 0.130 3.870 14 C 0.202 3.798 15 H 0.096 0.904 16 N -0.712 5.712 17 C -0.204 4.204 18 H 0.052 0.948 19 C -0.049 4.049 20 N -0.952 5.952 21 Si 0.937 3.063 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.096 4.096 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.131 4.131 29 C -0.137 4.137 30 C -0.100 4.100 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.407 0.593 45 H 0.069 0.931 46 H 0.031 0.969 47 H 0.382 0.618 48 H 0.249 0.751 49 H 0.126 0.874 50 H 0.141 0.859 51 H 0.143 0.857 52 H 0.129 0.871 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 -2.544 4.064 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.077 4.077 4 N -0.238 5.238 5 C -0.090 4.090 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.059 4.059 9 H 0.114 0.886 10 C 0.301 3.699 11 O -0.455 6.455 12 N -0.350 5.350 13 C 0.004 3.996 14 C 0.092 3.908 15 H 0.113 0.887 16 N -0.351 5.351 17 C -0.336 4.336 18 H 0.070 0.930 19 C -0.242 4.242 20 N -0.603 5.603 21 Si 0.769 3.231 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.221 1.221 25 C -0.099 4.099 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.149 4.149 29 C -0.155 4.155 30 C -0.119 4.119 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.243 0.757 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.215 0.785 48 H 0.058 0.942 49 H 0.144 0.856 50 H 0.159 0.841 51 H 0.160 0.840 52 H 0.147 0.853 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.602 -3.627 3.035 15.349 hybrid contribution 1.371 0.330 0.503 1.497 sum -13.231 -3.297 3.538 14.087 Atomic orbital electron populations 1.21704 0.94327 1.02368 1.01934 1.21386 0.96322 0.95260 1.01937 1.22293 0.86549 0.98426 1.00395 1.65020 1.09176 1.20859 1.28702 1.23205 0.94896 1.01891 0.88963 1.22298 0.96855 0.97128 0.99371 1.22206 0.93180 1.00930 0.98752 1.22526 0.98438 0.93152 0.91799 0.88643 1.20772 0.77050 0.80815 0.91258 1.90620 1.48511 1.48117 1.58216 1.45701 1.60940 1.19552 1.08801 1.21575 0.99090 0.97683 0.81254 1.19480 0.87179 0.94592 0.89581 0.88664 1.42313 1.08543 1.34662 1.49541 1.18923 0.94366 1.08100 1.12217 0.93037 1.25014 0.99517 1.00510 0.99203 1.69703 1.24156 1.39341 1.27056 0.85781 0.80137 0.80059 0.77150 1.21522 1.21865 1.22070 1.20663 0.95740 0.96586 0.96878 1.21291 0.99838 1.00155 0.93942 1.21374 0.99238 0.98879 0.95308 1.21368 0.95629 0.97577 1.00352 1.21366 0.99978 1.00957 0.93215 1.21002 0.97151 0.97993 0.95715 0.93389 0.91608 0.91710 0.93373 0.91154 0.93099 0.92789 0.89201 0.91696 0.91742 0.88652 0.93816 0.89144 0.75730 0.91317 0.95055 0.78519 0.94207 0.85610 0.84083 0.83969 0.85296 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.72 16 2 C -0.11 -2.35 6.05 30.60 0.19 -2.17 16 3 C 0.05 1.24 4.62 86.30 0.40 1.64 16 4 N -0.51 -14.17 4.62 -861.05 -3.98 -18.15 16 5 C 0.04 0.79 5.91 86.45 0.51 1.30 16 6 C -0.12 -2.67 7.00 31.49 0.22 -2.45 16 7 C -0.11 -3.19 6.47 31.49 0.20 -2.99 16 8 C 0.05 1.50 2.67 44.32 0.12 1.62 16 9 H 0.10 2.25 8.00 -2.39 -0.02 2.23 16 10 C 0.51 18.67 6.84 87.66 0.60 19.27 16 11 O -0.58 -25.05 15.76 -3.05 -0.05 -25.10 16 12 N -0.70 -24.40 5.33 -463.06 -2.47 -26.86 16 13 C 0.13 4.74 3.88 86.38 0.34 5.07 16 14 C 0.20 7.16 3.26 44.24 0.14 7.31 16 15 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 16 N -0.71 -30.78 3.83 -326.51 -1.25 -32.03 16 17 C -0.20 -10.38 8.47 84.03 0.71 -9.67 16 18 H 0.05 2.79 7.23 -2.91 -0.02 2.77 16 19 C -0.05 -2.64 5.50 84.86 0.47 -2.17 16 20 N -0.95 -53.02 13.06 21.65 0.28 -52.74 16 21 Si 0.94 45.95 29.55 68.60 2.03 47.98 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 25 C -0.10 -3.40 5.17 -19.87 -0.10 -3.50 16 26 C -0.13 -4.20 9.14 22.27 0.20 -4.00 16 27 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 28 C -0.13 -3.57 10.05 22.27 0.22 -3.34 16 29 C -0.14 -4.28 10.05 22.27 0.22 -4.05 16 30 C -0.10 -3.66 9.00 22.27 0.20 -3.46 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.30 7.47 -2.39 -0.02 1.28 16 36 H 0.05 1.00 7.77 -2.39 -0.02 0.99 16 37 H 0.05 1.55 7.30 -2.39 -0.02 1.54 16 38 H 0.09 1.74 7.85 -2.38 -0.02 1.72 16 39 H 0.06 1.09 7.75 -2.39 -0.02 1.07 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.04 1.59 7.85 -2.39 -0.02 1.57 16 43 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.41 13.44 8.12 -92.71 -0.75 12.68 16 45 H 0.07 2.29 6.86 -2.39 -0.02 2.27 16 46 H 0.03 1.38 7.35 -2.39 -0.02 1.36 16 47 H 0.38 17.44 8.04 -92.71 -0.75 16.70 16 48 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 49 H 0.13 3.66 6.22 -2.91 -0.02 3.65 16 50 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 51 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 52 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 53 H 0.11 4.33 7.51 -2.91 -0.02 4.31 16 Total: -1.00 -65.14 420.44 -0.45 -65.59 By element: Atomic # 1 Polarization: 48.59 SS G_CDS: -0.60 Total: 47.99 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.58 Total: -6.68 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -7.41 Total: -129.77 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.05 Total: -25.10 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -65.14 -0.45 -65.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267520250.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.951 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds