Wall clock time and date at job start Wed Apr 1 2020 03:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46907 * 2 1 4 4 C 1.52999 * 109.46914 * 119.99990 * 2 1 3 5 5 H 1.09004 * 109.47316 * 185.00172 * 4 2 1 6 6 C 1.53000 * 109.47319 * 64.99969 * 4 2 1 7 7 N 1.46497 * 109.47296 * 184.99774 * 6 4 2 8 8 C 1.34774 * 120.00176 * 179.97438 * 7 6 4 9 9 O 1.21549 * 119.99818 * 0.02562 * 8 7 6 10 10 C 1.47860 * 120.00139 * 179.97438 * 8 7 6 11 11 C 1.39613 * 120.11066 * 0.02562 * 10 8 7 12 12 C 1.37988 * 120.00670 * 180.02562 * 11 10 8 13 13 C 1.38239 * 120.22710 * 359.97438 * 12 11 10 14 14 C 1.38988 * 120.22010 * 0.02562 * 13 12 11 15 15 N 1.39704 * 120.00475 * 179.97438 * 14 13 12 16 16 C 1.47903 * 111.00347 * 54.23707 * 15 14 13 17 17 C 1.53989 * 107.06057 * 214.15933 * 16 15 14 18 18 C 1.54594 * 105.14270 * 1.22141 * 17 16 15 19 19 C 1.48534 * 111.00102 * 296.84306 * 15 14 13 20 20 C 1.38684 * 119.99151 * 0.24536 * 14 13 12 21 21 N 1.46502 * 109.47261 * 305.00158 * 4 2 1 22 22 C 1.36935 * 119.99942 * 275.00396 * 21 4 2 23 23 H 1.07998 * 120.00313 * 359.97438 * 22 21 4 24 24 C 1.38814 * 119.99923 * 179.97438 * 22 21 4 25 25 N 1.31617 * 120.00125 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99892 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47217 * 60.00258 * 26 24 22 28 28 H 1.48503 * 109.47039 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47337 * 300.00316 * 26 24 22 30 30 H 1.08994 * 109.47551 * 300.00093 * 1 2 3 31 31 H 1.09003 * 109.47035 * 60.00443 * 1 2 3 32 32 H 1.08999 * 109.46869 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46824 * 239.99957 * 2 1 3 34 34 H 1.09001 * 109.47004 * 60.00036 * 3 2 1 35 35 H 1.09000 * 109.46895 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47113 * 299.99752 * 3 2 1 37 37 H 1.09004 * 109.46880 * 64.99919 * 6 4 2 38 38 H 1.08998 * 109.47336 * 305.00491 * 6 4 2 39 39 H 0.96998 * 120.00121 * 0.02562 * 7 6 4 40 40 H 1.08006 * 119.99500 * 0.02562 * 11 10 8 41 41 H 1.07998 * 119.88257 * 180.02562 * 12 11 10 42 42 H 1.07997 * 119.88994 * 180.02562 * 13 12 11 43 43 H 1.08997 * 109.91730 * 94.80208 * 16 15 14 44 44 H 1.09005 * 109.91600 * 333.51285 * 16 15 14 45 45 H 1.09005 * 110.31089 * 120.14333 * 17 16 15 46 46 H 1.09003 * 110.30936 * 242.30561 * 17 16 15 47 47 H 1.09001 * 110.72741 * 140.31100 * 18 17 16 48 48 H 1.08995 * 110.72428 * 263.60397 * 18 17 16 49 49 H 1.09002 * 110.66677 * 41.28528 * 19 15 14 50 50 H 1.09004 * 110.66433 * 278.15506 * 19 15 14 51 51 H 1.07994 * 120.10907 * 179.72037 * 20 14 13 52 52 H 0.97004 * 120.00308 * 94.99785 * 21 4 2 53 53 H 0.96994 * 119.99876 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.6352 -2.1955 1.1880 7 7 2.0183 -2.8594 2.4365 8 6 1.7587 -4.1705 2.6097 9 8 1.2070 -4.8022 1.7299 10 6 2.1459 -4.8406 3.8696 11 6 2.7801 -4.1174 4.8814 12 6 3.1410 -4.7451 6.0561 13 6 2.8763 -6.0899 6.2362 14 6 2.2454 -6.8190 5.2352 15 7 1.9806 -8.1780 5.4218 16 6 1.2177 -8.4030 6.6687 17 6 1.6867 -9.7503 7.2484 18 6 2.7768 -10.2518 6.2736 19 6 3.2405 -8.9499 5.5732 20 6 1.8838 -6.1986 4.0487 21 7 1.4558 -0.1037 2.4424 22 6 2.0440 1.0002 2.9997 23 1 2.9388 1.4153 2.5600 24 6 1.4902 1.5857 4.1299 25 7 0.4000 1.0795 4.6662 26 14 2.2930 3.0911 4.8906 27 1 2.3236 4.1922 3.8946 28 1 1.5136 3.5201 6.0797 29 1 3.6802 2.7575 5.3025 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 2.1408 -2.6766 0.3507 38 1 0.5563 -2.2707 1.0527 39 1 2.4582 -2.3552 3.1387 40 1 2.9883 -3.0664 4.7447 41 1 3.6311 -4.1836 6.8376 42 1 3.1608 -6.5756 7.1579 43 1 0.1509 -8.4445 6.4490 44 1 1.4223 -7.6018 7.3790 45 1 2.1061 -9.6083 8.2444 46 1 0.8569 -10.4564 7.2837 47 1 3.6011 -10.7106 6.8196 48 1 2.3557 -10.9500 5.5503 49 1 3.9506 -8.4086 6.1984 50 1 3.6754 -9.1714 4.5985 51 1 1.3975 -6.7643 3.2678 52 1 0.6522 -0.4767 2.8376 53 1 0.0132 1.4884 5.4561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268222428.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:11 Heat of formation + Delta-G solvation = -13.999139 kcal Electronic energy + Delta-G solvation = -30401.752648 eV Core-core repulsion = 26465.443393 eV Total energy + Delta-G solvation = -3936.309255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.55680 -40.57649 -38.94515 -38.27542 -35.40997 -34.72663 -33.63407 -32.31241 -31.87483 -29.94998 -29.83885 -28.98803 -27.78817 -25.87810 -24.98608 -23.81807 -23.07719 -22.40811 -21.79117 -21.06304 -20.19936 -19.33445 -18.87307 -17.43796 -17.31446 -17.01959 -16.76588 -16.64166 -16.18781 -15.85812 -15.60640 -15.37634 -15.13892 -15.00582 -14.78660 -14.66258 -14.47063 -14.17572 -13.84451 -13.75500 -13.42307 -13.15554 -12.99124 -12.86051 -12.80990 -12.76399 -12.68179 -12.45659 -12.36450 -12.24624 -12.15139 -12.08374 -11.94907 -11.89935 -11.45163 -11.39381 -11.17461 -11.06555 -10.79170 -10.19554 -9.91854 -9.78637 -9.54902 -8.91973 -7.83555 -5.09878 -0.24272 0.26481 1.51836 1.53285 1.58103 1.77715 2.17152 2.62238 2.76322 2.87767 3.49576 3.66789 3.68343 3.86336 3.88740 3.91773 3.94438 4.04007 4.05999 4.17105 4.28463 4.31831 4.35588 4.37743 4.44410 4.50472 4.58038 4.69064 4.72330 4.77137 4.87336 4.91668 4.95865 4.96144 4.99660 5.03973 5.11932 5.13939 5.23097 5.25003 5.27386 5.28998 5.32730 5.34192 5.36932 5.51317 5.60811 5.63339 5.66056 5.79031 5.82438 6.32681 6.35878 6.54314 7.16408 7.44494 8.15987 8.41795 9.38933 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.002504 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.917087 B =11178.252871 C =12662.531052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.169 3.831 5 H 0.059 0.941 6 C 0.119 3.881 7 N -0.703 5.703 8 C 0.551 3.449 9 O -0.583 6.583 10 C -0.138 4.138 11 C -0.088 4.088 12 C -0.111 4.111 13 C -0.118 4.118 14 C 0.070 3.930 15 N -0.500 5.500 16 C 0.031 3.969 17 C -0.126 4.126 18 C -0.118 4.118 19 C 0.034 3.966 20 C -0.053 4.053 21 N -0.720 5.720 22 C -0.213 4.213 23 H 0.079 0.921 24 C -0.069 4.069 25 N -0.966 5.966 26 Si 0.955 3.045 27 H -0.285 1.285 28 H -0.306 1.306 29 H -0.278 1.278 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.410 0.590 40 H 0.132 0.868 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.079 0.921 51 H 0.123 0.877 52 H 0.373 0.627 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.802 -18.754 3.408 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.194 4.194 4 C 0.060 3.940 5 H 0.077 0.923 6 C -0.006 4.006 7 N -0.353 5.353 8 C 0.340 3.660 9 O -0.465 6.465 10 C -0.142 4.142 11 C -0.107 4.107 12 C -0.129 4.129 13 C -0.138 4.138 14 C -0.024 4.024 15 N -0.222 5.222 16 C -0.095 4.095 17 C -0.164 4.164 18 C -0.156 4.156 19 C -0.091 4.091 20 C -0.073 4.073 21 N -0.360 5.360 22 C -0.344 4.344 23 H 0.097 0.903 24 C -0.262 4.262 25 N -0.618 5.618 26 Si 0.787 3.213 27 H -0.212 1.212 28 H -0.233 1.233 29 H -0.205 1.205 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.248 0.752 40 H 0.150 0.850 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.097 0.903 51 H 0.141 0.859 52 H 0.205 0.795 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.253 -19.206 2.352 20.664 hybrid contribution 0.158 1.710 1.427 2.232 sum 7.412 -17.496 3.778 19.373 Atomic orbital electron populations 1.21689 0.95969 1.00687 1.00812 1.21581 0.95876 0.96998 0.98138 1.21758 1.00061 0.96330 1.01290 1.20695 0.96828 0.88758 0.87674 0.92321 1.21693 1.00088 0.92842 0.85931 1.45891 1.60262 1.09020 1.20150 1.18585 0.78305 0.82131 0.87006 1.90702 1.44884 1.65871 1.45089 1.19827 1.04548 0.94932 0.94875 1.21553 0.95838 1.00113 0.93214 1.21278 0.99705 0.94698 0.97262 1.22015 0.97363 0.94908 0.99559 1.18911 0.99067 0.90574 0.93874 1.62354 1.18229 1.04733 1.36910 1.23096 0.98887 0.98492 0.89050 1.22414 0.99404 0.95288 0.99269 1.22495 0.98856 0.96020 0.98206 1.23444 0.90068 0.94412 1.01191 1.21011 0.96726 0.92446 0.97103 1.42491 1.31361 1.32668 1.29522 1.19426 1.06207 1.03410 1.05396 0.90297 1.25296 0.98757 1.02108 1.00013 1.69796 1.23736 1.43794 1.24426 0.85480 0.77681 0.80803 0.77374 1.21202 1.23298 1.20463 0.94471 0.92605 0.93337 0.90302 0.93106 0.93229 0.92990 0.90349 0.92555 0.75172 0.85014 0.82723 0.83322 0.90860 0.92689 0.89828 0.90058 0.88834 0.90790 0.92393 0.90266 0.85898 0.79517 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.74 71.98 0.63 -3.88 16 2 C -0.10 -3.35 2.74 -10.79 -0.03 -3.37 16 3 C -0.14 -4.54 8.46 71.98 0.61 -3.93 16 4 C 0.17 5.96 2.29 44.99 0.10 6.06 16 5 H 0.06 2.04 8.08 -2.38 -0.02 2.02 16 6 C 0.12 4.01 5.10 86.38 0.44 4.45 16 7 N -0.70 -24.16 5.34 -465.97 -2.49 -26.64 16 8 C 0.55 20.01 7.77 86.79 0.67 20.68 16 9 O -0.58 -24.48 16.34 -3.87 -0.06 -24.54 16 10 C -0.14 -4.34 5.87 -20.11 -0.12 -4.45 16 11 C -0.09 -2.39 9.54 22.54 0.21 -2.18 16 12 C -0.11 -2.41 10.02 22.21 0.22 -2.19 16 13 C -0.12 -2.40 7.90 22.45 0.18 -2.22 16 14 C 0.07 1.69 4.86 38.17 0.19 1.88 16 15 N -0.50 -10.53 5.27 -682.89 -3.60 -14.13 16 16 C 0.03 0.53 6.48 86.44 0.56 1.09 16 17 C -0.13 -1.42 6.93 31.47 0.22 -1.20 16 18 C -0.12 -1.33 7.06 31.80 0.22 -1.11 16 19 C 0.03 0.55 6.43 86.65 0.56 1.10 16 20 C -0.05 -1.58 9.52 22.67 0.22 -1.37 16 21 N -0.72 -31.61 3.53 -322.93 -1.14 -32.75 16 22 C -0.21 -10.36 7.75 84.03 0.65 -9.71 16 23 H 0.08 3.70 7.32 -2.91 -0.02 3.68 16 24 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 25 N -0.97 -55.65 13.06 21.65 0.28 -55.36 16 26 Si 0.96 43.69 29.55 68.60 2.03 45.72 16 27 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 30 H 0.04 1.50 7.47 -2.39 -0.02 1.48 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.56 6.46 -2.39 -0.02 1.55 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 2.05 5.99 -2.39 -0.01 2.03 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.06 2.07 6.34 -2.39 -0.02 2.05 16 39 H 0.41 13.97 6.17 -92.71 -0.57 13.39 16 40 H 0.13 3.57 6.40 -2.91 -0.02 3.55 16 41 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.15 2.20 7.02 -2.91 -0.02 2.17 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.05 0.89 6.30 -2.38 -0.02 0.88 16 45 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.06 0.83 7.02 -2.39 -0.02 0.81 16 50 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 51 H 0.12 4.02 7.65 -2.91 -0.02 4.00 16 52 H 0.37 18.49 7.80 -92.71 -0.72 17.77 16 53 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -63.24 413.33 0.64 -62.59 By element: Atomic # 1 Polarization: 49.05 SS G_CDS: -0.38 Total: 48.68 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 6.00 Total: -3.55 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -6.95 Total: -128.89 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.06 Total: -24.54 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.24 0.64 -62.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268222428.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.595 kcal (2) G-P(sol) polarization free energy of solvation -63.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds