Wall clock time and date at job start Wed Apr 1 2020 03:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47183 * 2 1 4 4 C 1.53006 * 109.47260 * 119.99814 * 2 1 3 5 5 H 1.08996 * 109.46727 * 299.99983 * 4 2 1 6 6 C 1.52993 * 109.46831 * 60.00111 * 4 2 1 7 7 N 1.46504 * 109.47354 * 175.00219 * 6 4 2 8 8 C 1.34776 * 120.00156 * 180.02562 * 7 6 4 9 9 O 1.21553 * 120.00061 * 359.97438 * 8 7 6 10 10 C 1.47862 * 119.99623 * 179.97438 * 8 7 6 11 11 C 1.39617 * 120.11201 * 359.97438 * 10 8 7 12 12 C 1.37982 * 120.00435 * 179.97438 * 11 10 8 13 13 C 1.38243 * 120.23023 * 359.95795 * 12 11 10 14 14 C 1.38988 * 120.21833 * 0.02562 * 13 12 11 15 15 N 1.39704 * 120.00475 * 179.97438 * 14 13 12 16 16 C 1.47909 * 111.00295 * 54.23397 * 15 14 13 17 17 C 1.53984 * 107.05980 * 214.15691 * 16 15 14 18 18 C 1.54601 * 105.14346 * 1.22817 * 17 16 15 19 19 C 1.48534 * 111.00102 * 296.84306 * 15 14 13 20 20 C 1.38684 * 119.99151 * 0.26918 * 14 13 12 21 21 N 1.46497 * 109.47136 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00067 * 85.00058 * 21 4 2 23 23 H 1.08001 * 119.99984 * 0.02562 * 22 21 4 24 24 C 1.38814 * 119.99612 * 179.97438 * 22 21 4 25 25 N 1.31617 * 120.00503 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99811 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47352 * 89.99862 * 26 24 22 28 28 H 1.48493 * 109.47506 * 210.00072 * 26 24 22 29 29 H 1.48498 * 109.47057 * 330.00180 * 26 24 22 30 30 H 1.09006 * 109.47246 * 299.99970 * 1 2 3 31 31 H 1.09004 * 109.47009 * 59.99650 * 1 2 3 32 32 H 1.08994 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47630 * 240.00148 * 2 1 3 34 34 H 1.08997 * 109.47105 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47032 * 299.99786 * 3 2 1 36 36 H 1.09006 * 109.47005 * 59.99882 * 3 2 1 37 37 H 1.08999 * 109.47835 * 55.00094 * 6 4 2 38 38 H 1.09007 * 109.47620 * 295.00150 * 6 4 2 39 39 H 0.96997 * 119.99331 * 359.97438 * 7 6 4 40 40 H 1.08002 * 119.99353 * 359.97438 * 11 10 8 41 41 H 1.07998 * 119.88120 * 179.97438 * 12 11 10 42 42 H 1.08001 * 119.89129 * 180.02562 * 13 12 11 43 43 H 1.08997 * 109.91437 * 94.80329 * 16 15 14 44 44 H 1.09000 * 109.91072 * 333.51591 * 16 15 14 45 45 H 1.09005 * 110.31185 * 120.14054 * 17 16 15 46 46 H 1.09003 * 110.31072 * 242.30812 * 17 16 15 47 47 H 1.08997 * 110.72488 * 140.31249 * 18 17 16 48 48 H 1.08999 * 110.71709 * 263.59894 * 18 17 16 49 49 H 1.09000 * 110.66810 * 41.27749 * 19 15 14 50 50 H 1.09004 * 110.66433 * 278.15506 * 19 15 14 51 51 H 1.07995 * 120.11204 * 179.75083 * 20 14 13 52 52 H 0.97002 * 119.99946 * 265.00599 * 21 4 2 53 53 H 0.97004 * 120.00372 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 2.1141 -2.8882 2.3807 8 6 1.8060 -4.1847 2.5822 9 8 1.0431 -4.7528 1.8253 10 6 2.3960 -4.9160 3.7238 11 6 3.2730 -4.2659 4.5942 12 6 3.8218 -4.9504 5.6592 13 6 3.5061 -6.2798 5.8694 14 6 2.6339 -6.9361 5.0089 15 7 2.3184 -8.2797 5.2252 16 6 1.8132 -8.4911 6.5992 17 6 2.2953 -9.8828 7.0486 18 6 3.1248 -10.4254 5.8621 19 6 3.5253 -9.1366 5.1013 20 6 2.0818 -6.2586 3.9321 21 7 3.5050 -0.7207 1.2496 22 6 4.1892 0.3543 1.7510 23 1 3.6488 1.2015 2.1467 24 6 5.5773 0.3545 1.7517 25 7 6.2359 -0.6782 1.2700 26 14 6.5107 1.8206 2.4364 27 1 6.7575 1.6170 3.8866 28 1 7.8086 1.9561 1.7278 29 1 5.7080 3.0543 2.2394 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.8184 -2.6511 0.3179 38 1 0.4436 -2.1651 1.3388 39 1 2.7232 -2.4349 2.9844 40 1 3.5217 -3.2272 4.4339 41 1 4.5003 -4.4457 6.3310 42 1 3.9386 -6.8101 6.7049 43 1 0.7238 -8.4562 6.6037 44 1 2.2147 -7.7263 7.2641 45 1 2.9189 -9.7980 7.9386 46 1 1.4430 -10.5338 7.2435 47 1 4.0091 -10.9532 6.2192 48 1 2.5165 -11.0729 5.2306 49 1 4.3846 -8.6616 5.5747 50 1 3.7347 -9.3571 4.0546 51 1 1.4070 -6.7678 3.2600 52 1 3.9903 -1.4818 0.8945 53 1 7.2059 -0.6779 1.2702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268222433.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:15 Heat of formation + Delta-G solvation = -16.294139 kcal Electronic energy + Delta-G solvation = -30302.663598 eV Core-core repulsion = 26366.254824 eV Total energy + Delta-G solvation = -3936.408774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.56149 -40.57962 -38.90238 -38.26757 -35.40145 -34.91715 -33.64006 -32.36323 -32.04638 -29.98404 -29.83981 -29.02774 -27.46660 -25.93898 -24.89355 -23.72469 -23.00976 -22.40934 -21.79245 -21.19249 -20.57833 -19.38039 -18.81115 -17.45674 -17.27874 -17.03677 -16.91973 -16.61658 -16.20418 -15.71294 -15.61177 -15.37486 -15.08794 -15.00709 -14.86551 -14.74298 -14.36229 -14.12664 -13.91570 -13.68253 -13.42852 -13.16208 -13.01234 -12.89284 -12.85253 -12.80849 -12.69482 -12.46152 -12.37264 -12.27831 -12.24413 -12.08799 -12.01045 -11.75815 -11.45194 -11.44904 -11.28008 -11.08678 -10.79858 -10.20890 -9.92894 -9.79237 -9.55187 -8.95329 -7.86003 -5.13501 -0.24834 0.26128 1.50348 1.52503 1.58984 1.76838 2.15911 2.60490 2.75708 2.87547 3.46739 3.65992 3.68068 3.85229 3.87406 3.89000 3.92342 4.03742 4.05973 4.16655 4.29400 4.31437 4.31518 4.37421 4.45221 4.49162 4.57970 4.65322 4.72419 4.77155 4.87199 4.91149 4.93345 4.95813 4.98178 5.03981 5.06632 5.13506 5.15966 5.24522 5.26583 5.27241 5.30220 5.32991 5.36842 5.49699 5.61089 5.63653 5.65943 5.78103 5.78785 6.32478 6.33390 6.53009 7.15118 7.41562 8.12154 8.37998 9.36661 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.002528 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.534892 B =11075.299410 C =12748.865776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.172 3.828 5 H 0.059 0.941 6 C 0.121 3.879 7 N -0.703 5.703 8 C 0.552 3.448 9 O -0.583 6.583 10 C -0.138 4.138 11 C -0.089 4.089 12 C -0.111 4.111 13 C -0.118 4.118 14 C 0.070 3.930 15 N -0.500 5.500 16 C 0.032 3.968 17 C -0.125 4.125 18 C -0.118 4.118 19 C 0.033 3.967 20 C -0.053 4.053 21 N -0.727 5.727 22 C -0.214 4.214 23 H 0.080 0.920 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.957 3.043 27 H -0.288 1.288 28 H -0.306 1.306 29 H -0.272 1.272 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.410 0.590 40 H 0.132 0.868 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.075 0.925 51 H 0.123 0.877 52 H 0.372 0.628 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 -13.888 12.727 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.191 4.191 4 C 0.064 3.936 5 H 0.077 0.923 6 C -0.003 4.003 7 N -0.354 5.354 8 C 0.340 3.660 9 O -0.465 6.465 10 C -0.142 4.142 11 C -0.107 4.107 12 C -0.129 4.129 13 C -0.138 4.138 14 C -0.024 4.024 15 N -0.222 5.222 16 C -0.094 4.094 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.093 4.093 20 C -0.073 4.073 21 N -0.367 5.367 22 C -0.345 4.345 23 H 0.098 0.902 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.788 3.212 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.198 1.198 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.248 0.752 40 H 0.149 0.851 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.094 0.906 51 H 0.141 0.859 52 H 0.204 0.796 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.203 -14.220 11.888 20.694 hybrid contribution 1.862 1.165 0.403 2.233 sum -7.340 -13.056 12.291 19.375 Atomic orbital electron populations 1.21855 0.93973 1.01847 1.02214 1.21624 0.95900 0.96851 0.98404 1.21728 1.01696 0.95398 1.00306 1.20688 0.84052 0.91978 0.96919 0.92339 1.21688 0.98114 0.92235 0.88296 1.45901 1.48131 1.10649 1.30717 1.18593 0.80698 0.81941 0.84776 1.90702 1.38376 1.68675 1.48742 1.19823 1.01997 0.95173 0.97201 1.21551 0.94620 1.00518 0.94045 1.21277 0.99780 0.94395 0.97486 1.22019 0.96738 0.95379 0.99674 1.18910 0.97171 0.90896 0.95442 1.62358 1.29032 1.02905 1.27901 1.23099 1.01060 0.98307 0.86928 1.22417 1.00693 0.94766 0.98471 1.22492 1.00666 0.95915 0.96534 1.23441 0.90626 0.93623 1.01589 1.21013 0.97681 0.92049 0.96515 1.42580 1.00431 1.20187 1.73505 1.19459 0.88762 0.96509 1.29818 0.90234 1.25345 0.97557 0.99822 1.03557 1.69810 1.06330 1.31739 1.53907 0.85371 0.77919 0.80294 0.77580 1.21565 1.23343 1.19752 0.92152 0.92050 0.92419 0.93177 0.93162 0.93069 0.93402 0.93213 0.89883 0.75185 0.85056 0.82719 0.83289 0.90512 0.92497 0.89819 0.89907 0.88987 0.90791 0.92555 0.90624 0.85878 0.79633 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.84 71.98 0.64 -2.98 16 2 C -0.11 -3.48 2.69 -10.79 -0.03 -3.51 16 3 C -0.13 -4.59 8.26 71.98 0.59 -3.99 16 4 C 0.17 6.18 2.18 44.99 0.10 6.28 16 5 H 0.06 2.07 8.08 -2.39 -0.02 2.06 16 6 C 0.12 4.15 4.73 86.38 0.41 4.56 16 7 N -0.70 -24.44 5.34 -465.95 -2.49 -26.93 16 8 C 0.55 20.13 7.77 86.79 0.67 20.80 16 9 O -0.58 -24.54 16.35 -3.88 -0.06 -24.60 16 10 C -0.14 -4.36 5.87 -20.10 -0.12 -4.47 16 11 C -0.09 -2.41 9.54 22.54 0.21 -2.20 16 12 C -0.11 -2.42 10.02 22.21 0.22 -2.20 16 13 C -0.12 -2.40 7.90 22.45 0.18 -2.22 16 14 C 0.07 1.70 4.86 38.17 0.19 1.88 16 15 N -0.50 -10.52 5.27 -682.90 -3.60 -14.12 16 16 C 0.03 0.51 6.48 86.44 0.56 1.07 16 17 C -0.13 -1.36 6.93 31.47 0.22 -1.14 16 18 C -0.12 -1.40 7.06 31.80 0.22 -1.18 16 19 C 0.03 0.56 6.43 86.65 0.56 1.12 16 20 C -0.05 -1.58 9.52 22.67 0.22 -1.36 16 21 N -0.73 -32.69 4.44 -322.95 -1.43 -34.13 16 22 C -0.21 -10.55 7.56 84.03 0.64 -9.91 16 23 H 0.08 3.78 7.40 -2.91 -0.02 3.76 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 25 N -0.97 -56.01 13.06 21.65 0.28 -55.73 16 26 Si 0.96 43.77 29.55 68.60 2.03 45.80 16 27 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 28 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.42 16 31 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.06 1.42 6.54 -2.39 -0.02 1.40 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 2.09 6.01 -2.39 -0.01 2.08 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.54 8.14 -2.38 -0.02 1.53 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.61 6.71 -2.38 -0.02 2.59 16 39 H 0.41 14.12 6.17 -92.71 -0.57 13.55 16 40 H 0.13 3.59 6.40 -2.91 -0.02 3.57 16 41 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 42 H 0.15 2.20 7.02 -2.91 -0.02 2.18 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 0.84 6.29 -2.39 -0.02 0.82 16 45 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.89 7.02 -2.39 -0.02 0.88 16 50 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 51 H 0.12 4.03 7.65 -2.91 -0.02 4.01 16 52 H 0.37 18.81 7.80 -92.71 -0.72 18.08 16 53 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -63.87 414.63 0.29 -63.58 By element: Atomic # 1 Polarization: 49.23 SS G_CDS: -0.38 Total: 48.85 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.94 Total: -2.73 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -7.24 Total: -130.90 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.87 0.29 -63.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268222433.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.291 kcal (2) G-P(sol) polarization free energy of solvation -63.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds