Wall clock time and date at job start Wed Apr 1 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46957 * 2 1 4 4 C 1.52997 * 109.47155 * 120.00270 * 2 1 3 5 5 C 1.53003 * 109.47330 * 64.72015 * 4 2 1 6 6 H 1.09003 * 109.47020 * 303.52840 * 5 4 2 7 7 C 1.53004 * 109.47202 * 63.52749 * 5 4 2 8 8 N 1.46496 * 109.46729 * 175.00199 * 7 5 4 9 9 C 1.36942 * 119.99530 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99904 * 359.97438 * 9 8 7 11 11 C 1.38808 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99910 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00095 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47249 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46971 * 120.00143 * 13 11 9 16 16 H 1.48503 * 109.47260 * 239.99890 * 13 11 9 17 17 N 1.46497 * 109.47141 * 183.52947 * 5 4 2 18 18 C 1.34777 * 119.99919 * 89.56659 * 17 5 4 19 19 O 1.21279 * 120.00139 * 355.00064 * 18 17 5 20 20 C 1.50700 * 119.99928 * 174.99964 * 18 17 5 21 21 H 1.09002 * 109.25365 * 59.47482 * 20 18 17 22 22 C 1.52723 * 109.22634 * 178.92756 * 20 18 17 23 23 C 1.53316 * 108.45769 * 171.59550 * 22 20 18 24 24 C 1.52773 * 108.36644 * 290.21731 * 23 22 20 25 25 C 1.50496 * 110.55872 * 50.90845 * 24 23 22 26 26 C 1.39179 * 117.98389 * 162.45820 * 25 24 23 27 27 C 1.38407 * 118.86705 * 179.44295 * 26 25 24 28 28 C 1.38247 * 118.84270 * 359.97438 * 27 26 25 29 29 N 1.31511 * 120.61083 * 0.13636 * 28 27 26 30 30 C 1.32705 * 122.39509 * 0.02596 * 29 28 27 31 31 H 1.09005 * 109.46740 * 184.38718 * 1 2 3 32 32 H 1.08993 * 109.47251 * 304.38909 * 1 2 3 33 33 H 1.09000 * 109.46746 * 64.39205 * 1 2 3 34 34 H 1.09004 * 109.47234 * 239.99698 * 2 1 3 35 35 H 1.09004 * 109.46868 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47183 * 299.99799 * 3 2 1 37 37 H 1.08999 * 109.47134 * 60.00481 * 3 2 1 38 38 H 1.09003 * 109.47210 * 304.71719 * 4 2 1 39 39 H 1.09004 * 109.47105 * 184.71931 * 4 2 1 40 40 H 1.08992 * 109.46948 * 295.00288 * 7 5 4 41 41 H 1.08996 * 109.46584 * 55.00154 * 7 5 4 42 42 H 0.96992 * 120.00547 * 0.02562 * 8 7 5 43 43 H 0.97005 * 120.00030 * 180.02562 * 12 11 9 44 44 H 0.96995 * 120.00508 * 269.56593 * 17 5 4 45 45 H 1.09000 * 109.63873 * 291.28920 * 22 20 18 46 46 H 1.09001 * 109.63963 * 51.90359 * 22 20 18 47 47 H 1.09004 * 109.68255 * 49.93463 * 23 22 20 48 48 H 1.08995 * 109.68499 * 170.45819 * 23 22 20 49 49 H 1.09005 * 109.25678 * 290.63190 * 24 23 22 50 50 H 1.09003 * 109.25778 * 171.18992 * 24 23 22 51 51 H 1.08003 * 120.56904 * 359.46227 * 26 25 24 52 52 H 1.08000 * 120.58283 * 180.02562 * 27 26 25 53 53 H 1.08000 * 119.69492 * 180.15637 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6293 -2.1940 1.1912 6 1 0.5468 -2.2654 1.0848 7 6 2.3048 -2.8652 -0.0064 8 7 2.0078 -4.2997 0.0063 9 6 2.5098 -5.1114 -0.9758 10 1 3.1243 -4.6939 -1.7597 11 6 2.2289 -6.4707 -0.9636 12 7 1.4796 -6.9793 -0.0085 13 14 2.9131 -7.5779 -2.3035 14 1 3.7171 -6.7672 -3.2530 15 1 3.7735 -8.6220 -1.6915 16 1 1.7920 -8.2246 -3.0317 17 7 2.0440 -2.8656 2.4254 18 6 1.2127 -2.9002 3.4857 19 8 0.1600 -2.2990 3.4509 20 6 1.5914 -3.6860 4.7147 21 1 2.5282 -3.2981 5.1148 22 6 0.4940 -3.5351 5.7660 23 6 0.7896 -4.5020 6.9185 24 6 0.5650 -5.9284 6.4197 25 6 1.3095 -6.1617 5.1328 26 6 1.5270 -7.4771 4.7333 27 6 2.1996 -7.7125 3.5468 28 6 2.6315 -6.6327 2.7993 29 7 2.4099 -5.4029 3.2094 30 6 1.7721 -5.1351 4.3418 31 1 -0.3633 -1.0247 0.0786 32 1 -0.3633 0.5804 0.8480 33 1 -0.3633 0.4442 -0.9267 34 1 1.8934 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6093 -0.2586 2.1372 39 1 3.1268 -0.6486 1.2925 40 1 1.9289 -2.4244 -0.9296 41 1 3.3829 -2.7167 0.0545 42 1 1.4556 -4.6745 0.7101 43 1 1.2836 -7.9293 0.0002 44 1 2.9167 -3.2853 2.4795 45 1 0.4834 -2.5114 6.1402 46 1 -0.4726 -3.7767 5.3239 47 1 1.8244 -4.3842 7.2403 48 1 0.1198 -4.2944 7.7529 49 1 -0.5004 -6.0873 6.2526 50 1 0.9192 -6.6325 7.1727 51 1 1.1767 -8.3000 5.3387 52 1 2.3831 -8.7222 3.2102 53 1 3.1554 -6.8006 1.8700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271286389.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:37 Heat of formation + Delta-G solvation = -31.071584 kcal Electronic energy + Delta-G solvation = -32426.577798 eV Core-core repulsion = 28489.528226 eV Total energy + Delta-G solvation = -3937.049572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.85636 -40.42234 -38.60930 -37.09282 -36.23943 -35.03578 -34.19808 -32.73953 -31.26902 -30.99624 -30.01511 -28.01694 -27.12858 -25.65599 -24.48346 -24.03430 -23.98781 -22.51184 -21.40336 -20.61619 -20.46291 -19.04950 -18.19732 -17.46210 -17.42777 -16.94304 -16.75524 -16.33703 -16.04072 -15.55842 -15.26342 -15.13433 -14.98780 -14.84558 -14.66104 -14.47566 -14.27617 -14.16631 -13.80751 -13.63271 -13.52338 -13.35545 -13.13477 -13.10141 -12.89712 -12.77592 -12.74180 -12.59311 -12.20094 -12.02430 -11.93654 -11.84719 -11.77582 -11.68696 -11.53159 -11.40371 -11.31849 -10.92367 -10.77787 -10.38474 -10.08317 -9.75156 -9.48758 -8.82792 -7.77825 -5.06508 0.33964 0.55503 1.48526 1.51593 1.58564 1.72653 2.41291 2.61969 3.04487 3.34765 3.51221 3.62926 3.78865 3.87679 3.96368 3.98751 4.00299 4.10675 4.21439 4.24265 4.27507 4.32971 4.40539 4.43580 4.50754 4.52275 4.64832 4.69168 4.76892 4.81934 4.84523 4.93501 4.96865 4.97258 5.00685 5.03169 5.05694 5.06949 5.12811 5.18509 5.20559 5.28767 5.36400 5.46323 5.49256 5.49888 5.51144 5.53002 5.60189 5.75523 6.00625 6.38396 6.77666 7.28163 7.43605 7.47718 8.21751 8.50697 9.41011 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006667 B = 0.006010 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4199.025779 B = 4657.861385 C = 8405.600366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.106 4.106 5 C 0.144 3.856 6 H 0.056 0.944 7 C 0.149 3.851 8 N -0.733 5.733 9 C -0.240 4.240 10 H 0.066 0.934 11 C -0.056 4.056 12 N -0.939 5.939 13 Si 0.958 3.042 14 H -0.277 1.277 15 H -0.292 1.292 16 H -0.304 1.304 17 N -0.689 5.689 18 C 0.521 3.479 19 O -0.587 6.587 20 C -0.047 4.047 21 H 0.127 0.873 22 C -0.094 4.094 23 C -0.110 4.110 24 C -0.073 4.073 25 C -0.135 4.135 26 C -0.080 4.080 27 C -0.179 4.179 28 C 0.141 3.859 29 N -0.491 5.491 30 C 0.107 3.893 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.027 0.973 42 H 0.380 0.620 43 H 0.245 0.755 44 H 0.410 0.590 45 H 0.084 0.916 46 H 0.051 0.949 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.076 0.924 50 H 0.100 0.900 51 H 0.160 0.840 52 H 0.136 0.864 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 7.302 14.460 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.195 4.195 4 C -0.145 4.145 5 C 0.039 3.961 6 H 0.074 0.926 7 C 0.021 3.979 8 N -0.377 5.377 9 C -0.372 4.372 10 H 0.084 0.916 11 C -0.250 4.250 12 N -0.589 5.589 13 Si 0.789 3.211 14 H -0.202 1.202 15 H -0.219 1.219 16 H -0.232 1.232 17 N -0.338 5.338 18 C 0.307 3.693 19 O -0.469 6.469 20 C -0.068 4.068 21 H 0.145 0.855 22 C -0.133 4.133 23 C -0.147 4.147 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.105 4.105 27 C -0.199 4.199 28 C -0.018 4.018 29 N -0.199 5.199 30 C -0.028 4.028 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.214 0.786 43 H 0.055 0.945 44 H 0.248 0.752 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.095 0.905 50 H 0.118 0.882 51 H 0.177 0.823 52 H 0.154 0.846 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.790 8.375 13.731 16.183 hybrid contribution 0.092 -2.192 -0.906 2.374 sum 1.882 6.183 12.825 14.361 Atomic orbital electron populations 1.21837 0.95772 1.00722 1.01834 1.21131 0.95612 0.97231 0.97512 1.21765 1.01226 0.94363 1.02130 1.21852 1.01324 0.92715 0.98577 1.21122 0.98695 0.92468 0.83841 0.92566 1.21052 0.96955 0.84770 0.95075 1.42442 1.61480 1.02704 1.31037 1.19496 1.24236 0.89941 1.03505 0.91596 1.25228 1.01673 0.97731 1.00350 1.69855 1.42902 1.11501 1.34609 0.85320 0.77006 0.79269 0.79496 1.20231 1.21932 1.23162 1.45957 1.20352 1.55383 1.12147 1.20709 0.83335 0.79925 0.85296 1.90617 1.25676 1.47343 1.83217 1.20204 1.03088 0.89586 0.93965 0.85516 1.21376 0.96161 1.01370 0.94352 1.21576 1.03425 0.92615 0.97084 1.20488 0.99339 0.98847 0.92350 1.20631 1.00684 0.92968 0.99444 1.21812 0.95912 0.97041 0.95779 1.22215 1.00622 1.00781 0.96300 1.22435 0.95056 0.87569 0.96766 1.67309 1.14395 1.24626 1.13619 1.20821 0.96125 0.94794 0.91107 0.94855 0.92723 0.91742 0.91252 0.92009 0.91819 0.92551 0.92232 0.90694 0.95108 0.95480 0.78645 0.94531 0.75220 0.89725 0.93032 0.90313 0.88484 0.90532 0.88192 0.82258 0.84622 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.05 71.98 0.65 -3.38 16 2 C -0.10 -2.52 2.76 -10.79 -0.03 -2.55 16 3 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 4 C -0.11 -3.09 4.49 30.59 0.14 -2.95 16 5 C 0.14 5.31 2.09 44.99 0.09 5.40 16 6 H 0.06 2.44 5.68 -2.39 -0.01 2.42 16 7 C 0.15 6.13 5.44 86.38 0.47 6.60 16 8 N -0.73 -37.13 5.43 -343.46 -1.87 -38.99 16 9 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 10 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 11 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 12 N -0.94 -53.12 11.53 21.65 0.25 -52.87 16 13 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 16 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 17 N -0.69 -24.98 3.75 -442.53 -1.66 -26.64 16 18 C 0.52 18.96 7.03 87.66 0.62 19.58 16 19 O -0.59 -24.61 15.46 -3.03 -0.05 -24.66 16 20 C -0.05 -1.36 2.70 -12.37 -0.03 -1.39 16 21 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 22 C -0.09 -2.28 4.65 30.61 0.14 -2.14 16 23 C -0.11 -1.85 5.98 30.62 0.18 -1.66 16 24 C -0.07 -1.39 5.68 29.71 0.17 -1.22 16 25 C -0.14 -3.76 5.74 -19.85 -0.11 -3.88 16 26 C -0.08 -2.20 9.75 22.54 0.22 -1.98 16 27 C -0.18 -6.03 10.12 22.31 0.23 -5.80 16 28 C 0.14 5.69 10.45 84.74 0.89 6.58 16 29 N -0.49 -18.95 7.73 -184.00 -1.42 -20.37 16 30 C 0.11 3.53 6.20 42.28 0.26 3.79 16 31 H 0.03 1.10 6.29 -2.38 -0.01 1.09 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.94 6.41 -2.38 -0.02 1.92 16 35 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.03 1.28 6.67 -2.39 -0.02 1.27 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.38 20.84 7.33 -92.71 -0.68 20.16 16 43 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 44 H 0.41 14.93 7.31 -92.71 -0.68 14.25 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.05 1.52 7.77 -2.39 -0.02 1.50 16 47 H 0.08 1.17 8.10 -2.38 -0.02 1.15 16 48 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 50 H 0.10 1.39 8.13 -2.39 -0.02 1.37 16 51 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 52 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 53 H 0.13 6.23 7.29 -2.91 -0.02 6.21 16 Total: -1.00 -66.20 412.54 2.68 -63.52 By element: Atomic # 1 Polarization: 55.28 SS G_CDS: -0.45 Total: 54.83 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.85 Total: -2.00 kcal Atomic # 7 Polarization: -134.18 SS G_CDS: -4.70 Total: -138.88 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.20 2.68 -63.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271286389.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.451 kcal (2) G-P(sol) polarization free energy of solvation -66.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds