Wall clock time and date at job start Wed Apr 1 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47504 * 2 1 4 4 C 1.53002 * 109.47229 * 120.00182 * 2 1 3 5 5 C 1.52998 * 109.47309 * 173.84780 * 4 2 1 6 6 H 1.08996 * 109.47185 * 56.98226 * 5 4 2 7 7 C 1.53005 * 109.46921 * 296.98273 * 5 4 2 8 8 N 1.46504 * 109.46862 * 185.00082 * 7 5 4 9 9 C 1.36930 * 119.99847 * 180.02562 * 8 7 5 10 10 H 1.08004 * 120.00423 * 359.97438 * 9 8 7 11 11 C 1.38816 * 120.00181 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99875 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00495 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46920 * 89.99550 * 13 11 9 15 15 H 1.48496 * 109.47423 * 210.00254 * 13 11 9 16 16 H 1.48501 * 109.46694 * 330.00078 * 13 11 9 17 17 N 1.46503 * 109.47245 * 176.98319 * 5 4 2 18 18 C 1.34781 * 119.99623 * 270.54497 * 17 5 4 19 19 O 1.21282 * 119.99963 * 4.81898 * 18 17 5 20 20 C 1.50693 * 119.99729 * 184.82080 * 18 17 5 21 21 H 1.09006 * 109.25929 * 299.48016 * 20 18 17 22 22 C 1.52724 * 109.25982 * 179.97438 * 20 18 17 23 23 C 1.53334 * 108.42330 * 188.42314 * 22 20 18 24 24 C 1.52764 * 108.35403 * 69.89283 * 23 22 20 25 25 C 1.50496 * 110.56356 * 309.21233 * 24 23 22 26 26 C 1.39196 * 117.97039 * 197.28909 * 25 24 23 27 27 C 1.38403 * 118.86485 * 180.21765 * 26 25 24 28 28 C 1.38241 * 118.84561 * 0.05934 * 27 26 25 29 29 N 1.31514 * 120.60992 * 359.84105 * 28 27 26 30 30 C 1.32699 * 122.39723 * 0.02660 * 29 28 27 31 31 H 1.09001 * 109.46840 * 59.99776 * 1 2 3 32 32 H 1.09005 * 109.46807 * 299.99995 * 1 2 3 33 33 H 1.08997 * 109.47239 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47243 * 239.99694 * 2 1 3 35 35 H 1.09007 * 109.47106 * 295.55446 * 3 2 1 36 36 H 1.08998 * 109.46966 * 55.54931 * 3 2 1 37 37 H 1.09001 * 109.47823 * 175.55427 * 3 2 1 38 38 H 1.09004 * 109.46957 * 293.84433 * 4 2 1 39 39 H 1.09006 * 109.47324 * 53.84781 * 4 2 1 40 40 H 1.08999 * 109.47182 * 304.99483 * 7 5 4 41 41 H 1.08997 * 109.47134 * 65.00407 * 7 5 4 42 42 H 0.96998 * 120.00053 * 359.97438 * 8 7 5 43 43 H 0.96996 * 120.00006 * 179.97438 * 12 11 9 44 44 H 0.96993 * 119.99654 * 90.54629 * 17 5 4 45 45 H 1.08994 * 109.67217 * 308.15431 * 22 20 18 46 46 H 1.09003 * 109.67379 * 68.65264 * 22 20 18 47 47 H 1.09003 * 109.68045 * 189.60723 * 23 22 20 48 48 H 1.08998 * 109.68797 * 310.17081 * 23 22 20 49 49 H 1.09007 * 109.26125 * 69.49602 * 24 23 22 50 50 H 1.09004 * 109.25882 * 188.93028 * 24 23 22 51 51 H 1.07994 * 120.56443 * 0.21229 * 26 25 24 52 52 H 1.08001 * 120.57494 * 180.02562 * 27 26 25 53 53 H 1.08002 * 119.69441 * 179.85821 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5622 -0.8566 1.1743 6 1 4.0097 0.1311 1.0637 7 6 3.9385 -1.7247 -0.0281 8 7 5.3856 -1.9531 -0.0317 9 6 5.9572 -2.7076 -1.0211 10 1 5.3412 -3.1348 -1.7986 11 6 7.3284 -2.9236 -1.0248 12 7 8.0793 -2.4027 -0.0776 13 14 8.1081 -3.9536 -2.3741 14 1 8.4940 -3.0747 -3.5072 15 1 9.3159 -4.6343 -1.8420 16 1 7.1342 -4.9705 -2.8458 17 7 4.0579 -1.4824 2.4027 18 6 4.3932 -0.7177 3.4607 19 8 4.2028 0.4796 3.4281 20 6 5.0046 -1.3504 4.6841 21 1 4.3063 -2.0765 5.1005 22 6 5.2860 -0.2678 5.7239 23 6 6.0956 -0.8922 6.8666 24 6 7.4965 -1.2093 6.3463 25 6 7.4192 -1.9911 5.0627 26 6 8.5580 -2.6737 4.6446 27 6 8.5089 -3.3949 3.4643 28 6 7.3309 -3.4112 2.7411 29 7 6.2738 -2.7556 3.1682 30 6 6.2791 -2.0550 4.2951 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.7433 1.9328 -0.9272 36 1 1.6131 1.9787 0.8474 37 1 3.1272 1.4435 0.0797 38 1 1.7695 -0.1478 2.1358 39 1 1.5896 -1.7123 1.3060 40 1 3.4199 -2.6811 0.0378 41 1 3.6486 -1.2167 -0.9479 42 1 5.9389 -1.5691 0.6664 43 1 9.0374 -2.5539 -0.0800 44 1 4.1448 -2.4471 2.4545 45 1 5.8583 0.5396 5.2673 46 1 4.3448 0.1227 6.1109 47 1 6.1625 -0.1884 7.6963 48 1 5.6115 -1.8098 7.2009 49 1 8.0333 -0.2774 6.1681 50 1 8.0331 -1.7953 7.0926 51 1 9.4642 -2.6410 5.2310 52 1 9.3761 -3.9352 3.1142 53 1 7.2781 -3.9677 1.8170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271286390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:42 Heat of formation + Delta-G solvation = -30.831590 kcal Electronic energy + Delta-G solvation = -32426.874131 eV Core-core repulsion = 28489.834966 eV Total energy + Delta-G solvation = -3937.039165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.86077 -40.41982 -38.60808 -37.09573 -36.23770 -35.03823 -34.19974 -32.73691 -31.26957 -30.99679 -30.01861 -28.01320 -27.12724 -25.65563 -24.48416 -24.04008 -23.98955 -22.50904 -21.40456 -20.61972 -20.46650 -19.04961 -18.19845 -17.46501 -17.42732 -16.93988 -16.75485 -16.33973 -16.04394 -15.55880 -15.25825 -15.13142 -14.98751 -14.85074 -14.66119 -14.47375 -14.27786 -14.17133 -13.80746 -13.64351 -13.52433 -13.35418 -13.13437 -13.10190 -12.89990 -12.75915 -12.74238 -12.58820 -12.22280 -12.02953 -11.94817 -11.84901 -11.77561 -11.68101 -11.53117 -11.40541 -11.32100 -10.92215 -10.77475 -10.38532 -10.09378 -9.75055 -9.48949 -8.82993 -7.77649 -5.06313 0.33796 0.55067 1.49179 1.51557 1.57832 1.72586 2.41357 2.62156 3.04052 3.34463 3.51327 3.62566 3.78930 3.87558 3.96075 3.98601 4.00165 4.10698 4.21614 4.24165 4.27527 4.32404 4.40152 4.43428 4.50716 4.52185 4.64507 4.68873 4.76725 4.81897 4.84228 4.93634 4.96730 4.97092 5.00424 5.02989 5.05482 5.07193 5.12709 5.18496 5.20596 5.28538 5.36362 5.46216 5.48992 5.49787 5.50779 5.53041 5.59968 5.75632 5.99842 6.38362 6.78125 7.27252 7.43726 7.47719 8.21680 8.50617 9.41129 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006670 B = 0.006007 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4196.776538 B = 4659.736340 C = 8394.530960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.106 4.106 5 C 0.144 3.856 6 H 0.055 0.945 7 C 0.149 3.851 8 N -0.733 5.733 9 C -0.241 4.241 10 H 0.066 0.934 11 C -0.055 4.055 12 N -0.939 5.939 13 Si 0.958 3.042 14 H -0.300 1.300 15 H -0.294 1.294 16 H -0.278 1.278 17 N -0.689 5.689 18 C 0.520 3.480 19 O -0.587 6.587 20 C -0.047 4.047 21 H 0.128 0.872 22 C -0.094 4.094 23 C -0.110 4.110 24 C -0.073 4.073 25 C -0.135 4.135 26 C -0.080 4.080 27 C -0.178 4.178 28 C 0.141 3.859 29 N -0.491 5.491 30 C 0.108 3.892 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.031 0.969 42 H 0.380 0.620 43 H 0.246 0.754 44 H 0.411 0.589 45 H 0.050 0.950 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.100 0.900 51 H 0.160 0.840 52 H 0.136 0.864 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.366 0.487 14.556 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.145 4.145 5 C 0.039 3.961 6 H 0.074 0.926 7 C 0.022 3.978 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.084 0.916 11 C -0.249 4.249 12 N -0.589 5.589 13 Si 0.789 3.211 14 H -0.228 1.228 15 H -0.221 1.221 16 H -0.203 1.203 17 N -0.339 5.339 18 C 0.307 3.693 19 O -0.469 6.469 20 C -0.068 4.068 21 H 0.145 0.855 22 C -0.133 4.133 23 C -0.147 4.147 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.106 4.106 27 C -0.198 4.198 28 C -0.018 4.018 29 N -0.200 5.200 30 C -0.028 4.028 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.213 0.787 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.118 0.882 51 H 0.177 0.823 52 H 0.154 0.846 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.259 1.166 13.857 16.174 hybrid contribution 1.994 -0.852 -0.955 2.369 sum -6.265 0.314 12.902 14.346 Atomic orbital electron populations 1.21767 0.93352 1.02225 1.02139 1.21139 0.97020 0.95855 0.97516 1.21832 0.99982 0.96470 1.01852 1.21854 0.92893 1.01141 0.98573 1.21110 0.94868 0.96162 0.83972 0.92637 1.21056 0.85517 0.96235 0.95033 1.42424 1.02436 1.61742 1.31016 1.19455 0.91156 1.23224 1.03505 0.91612 1.25230 0.96621 1.02709 1.00363 1.69846 1.04022 1.50074 1.34928 0.85395 0.77857 0.78546 0.79305 1.22795 1.22103 1.20329 1.45986 1.63993 1.11353 1.12553 1.20715 0.76859 0.86514 0.85225 1.90618 1.56945 1.16300 1.83009 1.20205 0.93868 0.98751 0.94011 0.85483 1.21374 1.01752 0.95598 0.94527 1.21578 0.94062 1.01968 0.97079 1.20489 0.98954 0.99250 0.92347 1.20634 0.93278 1.00225 0.99534 1.21814 0.98640 0.94434 0.95663 1.22202 0.99413 1.01757 0.96422 1.22379 0.88690 0.94075 0.96624 1.67279 1.32029 1.07650 1.13022 1.20813 0.94706 0.96038 0.91269 0.91820 0.92523 0.92030 0.91260 0.91745 0.92681 0.94874 0.92239 0.90707 0.95491 0.95094 0.78711 0.94523 0.75124 0.93069 0.89728 0.88484 0.90290 0.90527 0.88180 0.82276 0.84644 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 2 C -0.10 -2.54 2.77 -10.79 -0.03 -2.57 16 3 C -0.14 -4.01 9.06 71.98 0.65 -3.36 16 4 C -0.11 -3.10 4.48 30.59 0.14 -2.96 16 5 C 0.14 5.32 2.10 44.99 0.09 5.42 16 6 H 0.06 2.41 5.75 -2.39 -0.01 2.40 16 7 C 0.15 6.14 5.43 86.38 0.47 6.61 16 8 N -0.73 -37.13 5.43 -343.44 -1.87 -38.99 16 9 C -0.24 -13.17 9.99 84.04 0.84 -12.34 16 10 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 11 C -0.06 -3.03 5.50 84.86 0.47 -2.57 16 12 N -0.94 -53.19 11.80 21.65 0.26 -52.93 16 13 Si 0.96 45.15 29.55 68.60 2.03 47.18 16 14 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 N -0.69 -25.04 3.76 -442.53 -1.66 -26.70 16 18 C 0.52 18.97 7.05 87.65 0.62 19.58 16 19 O -0.59 -24.64 15.47 -3.03 -0.05 -24.68 16 20 C -0.05 -1.35 2.70 -12.37 -0.03 -1.39 16 21 H 0.13 3.03 8.14 -2.38 -0.02 3.01 16 22 C -0.09 -2.28 4.65 30.61 0.14 -2.14 16 23 C -0.11 -1.85 5.98 30.63 0.18 -1.66 16 24 C -0.07 -1.39 5.68 29.71 0.17 -1.22 16 25 C -0.13 -3.74 5.74 -19.85 -0.11 -3.86 16 26 C -0.08 -2.20 9.75 22.54 0.22 -1.98 16 27 C -0.18 -5.98 10.12 22.31 0.23 -5.75 16 28 C 0.14 5.68 10.51 84.74 0.89 6.58 16 29 N -0.49 -18.86 7.65 -184.00 -1.41 -20.26 16 30 C 0.11 3.52 6.20 42.29 0.26 3.78 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.95 6.33 -2.38 -0.02 1.93 16 35 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.03 1.09 6.35 -2.39 -0.02 1.08 16 38 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.03 1.29 6.63 -2.39 -0.02 1.27 16 42 H 0.38 20.84 7.33 -92.71 -0.68 20.16 16 43 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 44 H 0.41 14.99 7.21 -92.71 -0.67 14.32 16 45 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 49 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 50 H 0.10 1.39 8.13 -2.38 -0.02 1.37 16 51 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 52 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 53 H 0.13 6.11 7.50 -2.91 -0.02 6.09 16 Total: -1.00 -66.18 412.97 2.72 -63.47 By element: Atomic # 1 Polarization: 55.34 SS G_CDS: -0.44 Total: 54.90 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 5.86 Total: -1.97 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -4.68 Total: -138.89 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.05 Total: -24.68 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -66.18 2.72 -63.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271286390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.637 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds