Wall clock time and date at job start Wed Apr 1 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 C 1.52994 * 109.47356 * 120.00520 * 2 1 3 5 5 C 1.52997 * 109.47404 * 174.99986 * 4 2 1 6 6 H 1.09002 * 109.47153 * 54.99686 * 5 4 2 7 7 C 1.53000 * 109.47060 * 175.00005 * 5 4 2 8 8 N 1.46507 * 109.46803 * 175.00213 * 7 5 4 9 9 C 1.36934 * 119.99498 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00844 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99803 * 179.97438 * 9 8 7 12 12 N 1.31626 * 119.99884 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00444 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46851 * 90.00052 * 13 11 9 15 15 H 1.48492 * 109.47389 * 210.00329 * 13 11 9 16 16 H 1.48498 * 109.46929 * 330.00601 * 13 11 9 17 17 N 1.46500 * 109.47007 * 294.99774 * 5 4 2 18 18 C 1.34777 * 120.00075 * 84.99755 * 17 5 4 19 19 O 1.21287 * 119.99865 * 0.02562 * 18 17 5 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 5 21 21 H 1.09003 * 109.25360 * 299.47972 * 20 18 17 22 22 C 1.52725 * 109.25885 * 180.02562 * 20 18 17 23 23 C 1.53327 * 108.42435 * 188.42527 * 22 20 18 24 24 C 1.52765 * 108.35697 * 69.89309 * 23 22 20 25 25 C 1.50504 * 110.56016 * 309.21596 * 24 23 22 26 26 C 1.39188 * 117.96637 * 197.28649 * 25 24 23 27 27 C 1.38411 * 118.86357 * 180.21072 * 26 25 24 28 28 C 1.38246 * 118.84329 * 0.07286 * 27 26 25 29 29 N 1.31511 * 120.61114 * 359.82460 * 28 27 26 30 30 C 1.32708 * 122.39578 * 0.03773 * 29 28 27 31 31 H 1.08994 * 109.47345 * 299.99908 * 1 2 3 32 32 H 1.09006 * 109.47459 * 59.99551 * 1 2 3 33 33 H 1.09006 * 109.47194 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46936 * 240.00470 * 2 1 3 35 35 H 1.09002 * 109.46802 * 300.00618 * 3 2 1 36 36 H 1.09004 * 109.46786 * 59.99824 * 3 2 1 37 37 H 1.08993 * 109.47103 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.47017 * 54.99628 * 4 2 1 39 39 H 1.09008 * 109.46970 * 294.99937 * 4 2 1 40 40 H 1.09008 * 109.47142 * 294.99397 * 7 5 4 41 41 H 1.08990 * 109.47170 * 54.99895 * 7 5 4 42 42 H 0.96994 * 119.99737 * 359.97438 * 8 7 5 43 43 H 0.96998 * 119.99867 * 179.97438 * 12 11 9 44 44 H 0.96997 * 120.00274 * 264.99726 * 17 5 4 45 45 H 1.08995 * 109.67494 * 308.16108 * 22 20 18 46 46 H 1.09004 * 109.67569 * 68.68995 * 22 20 18 47 47 H 1.09003 * 109.68554 * 189.60839 * 23 22 20 48 48 H 1.09000 * 109.68796 * 310.17114 * 23 22 20 49 49 H 1.08995 * 109.25796 * 69.49404 * 24 23 22 50 50 H 1.08994 * 109.25891 * 188.94145 * 24 23 22 51 51 H 1.07996 * 120.57286 * 0.21807 * 26 25 24 52 52 H 1.07996 * 120.57617 * 180.02562 * 27 26 25 53 53 H 1.07998 * 119.69690 * 179.85148 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 1 3.9954 0.1611 1.0526 7 6 4.0851 -1.4396 2.4917 8 7 5.5305 -1.6552 2.3873 9 6 6.2201 -2.1940 3.4404 10 1 5.6986 -2.4604 4.3479 11 6 7.5895 -2.3988 3.3414 12 7 8.2251 -2.0746 2.2353 13 14 8.5303 -3.1344 4.7778 14 1 8.5507 -4.6139 4.6503 15 1 9.9225 -2.6180 4.7742 16 1 7.8653 -2.7564 6.0506 17 7 3.9479 -1.6872 0.0624 18 6 4.0651 -1.1630 -1.1737 19 8 3.8538 0.0176 -1.3543 20 6 4.4597 -2.0435 -2.3313 21 1 5.4430 -2.4724 -2.1378 22 6 4.5190 -1.2038 -3.6056 23 6 4.7120 -2.1470 -4.7989 24 6 3.4224 -2.9413 -4.9978 25 6 2.9819 -3.5671 -3.7019 26 6 2.0572 -4.6058 -3.7598 27 6 1.6358 -5.1918 -2.5788 28 6 2.1470 -4.7239 -1.3826 29 7 3.0211 -3.7415 -1.3665 30 6 3.4524 -3.1552 -2.4763 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6054 -1.7199 1.2950 39 1 1.7517 -0.1584 2.1369 40 1 3.8780 -0.7596 3.3181 41 1 3.5877 -2.3925 2.6718 42 1 5.9988 -1.4162 1.5721 43 1 9.1820 -2.2173 2.1662 44 1 4.1173 -2.6313 0.2068 45 1 3.5882 -0.6490 -3.7231 46 1 5.3564 -0.5084 -3.5482 47 1 4.9272 -1.5655 -5.6955 48 1 5.5369 -2.8303 -4.5972 49 1 2.6406 -2.2730 -5.3584 50 1 3.5932 -3.7252 -5.7357 51 1 1.6750 -4.9488 -4.7099 52 1 0.9195 -6.0000 -2.5915 53 1 1.8259 -5.1695 -0.4527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271286391.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:47 Heat of formation + Delta-G solvation = -29.157900 kcal Electronic energy + Delta-G solvation = -32345.742250 eV Core-core repulsion = 28408.775662 eV Total energy + Delta-G solvation = -3936.966588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.00980 -40.61980 -38.27987 -37.05413 -36.44210 -35.01393 -34.26232 -32.84742 -31.40066 -31.09556 -30.18116 -27.96822 -27.18340 -25.71505 -24.69044 -24.17833 -24.05466 -22.21676 -21.32803 -20.80138 -20.54449 -19.23442 -18.17806 -17.65091 -17.51257 -16.94945 -16.71888 -16.61186 -16.13905 -15.51852 -15.30677 -15.23594 -15.09633 -14.67165 -14.61665 -14.52640 -14.50898 -14.21041 -13.80166 -13.77248 -13.46756 -13.41467 -13.15038 -13.01067 -12.94682 -12.81375 -12.79662 -12.54884 -12.31314 -12.10452 -12.06254 -11.88955 -11.84061 -11.58488 -11.48837 -11.38533 -11.23205 -10.97263 -10.74687 -10.50606 -10.23921 -9.67683 -9.64166 -9.00121 -7.93481 -5.22895 0.17331 0.39063 1.47053 1.48890 1.57360 1.81469 2.42299 2.56523 2.88380 3.24016 3.40350 3.55822 3.68303 3.84834 3.90368 3.91964 4.02295 4.09474 4.13455 4.19843 4.25292 4.31757 4.37250 4.41167 4.43486 4.47889 4.58533 4.68690 4.71888 4.78409 4.87315 4.87437 4.88390 4.92153 4.94997 4.98941 4.99309 5.07081 5.11857 5.15251 5.21633 5.26483 5.30149 5.37865 5.40510 5.42006 5.50326 5.57899 5.66126 5.81709 5.83320 6.27012 6.84728 7.07594 7.34046 7.50054 8.07890 8.32950 9.29818 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009204 B = 0.003865 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.474463 B = 7242.536435 C = 8339.909557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.108 4.108 5 C 0.145 3.855 6 H 0.064 0.936 7 C 0.147 3.853 8 N -0.740 5.740 9 C -0.244 4.244 10 H 0.077 0.923 11 C -0.073 4.073 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.286 1.286 15 H -0.297 1.297 16 H -0.269 1.269 17 N -0.689 5.689 18 C 0.520 3.480 19 O -0.565 6.565 20 C -0.058 4.058 21 H 0.099 0.901 22 C -0.092 4.092 23 C -0.116 4.116 24 C -0.074 4.074 25 C -0.125 4.125 26 C -0.078 4.078 27 C -0.165 4.165 28 C 0.087 3.913 29 N -0.509 5.509 30 C 0.116 3.884 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.409 0.591 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.166 0.834 52 H 0.165 0.835 53 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.602 -4.674 -16.535 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.188 4.188 4 C -0.147 4.147 5 C 0.040 3.960 6 H 0.082 0.918 7 C 0.020 3.980 8 N -0.383 5.383 9 C -0.376 4.376 10 H 0.095 0.905 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.213 1.213 15 H -0.224 1.224 16 H -0.194 1.194 17 N -0.340 5.340 18 C 0.307 3.693 19 O -0.445 6.445 20 C -0.079 4.079 21 H 0.117 0.883 22 C -0.130 4.130 23 C -0.154 4.154 24 C -0.111 4.111 25 C -0.127 4.127 26 C -0.104 4.104 27 C -0.185 4.185 28 C -0.073 4.073 29 N -0.218 5.218 30 C -0.019 4.019 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.247 0.753 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.114 0.886 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.120 0.880 51 H 0.184 0.816 52 H 0.183 0.817 53 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.423 -3.620 -15.642 23.693 hybrid contribution 0.985 -0.938 0.200 1.375 sum -16.438 -4.558 -15.442 23.009 Atomic orbital electron populations 1.21782 0.94567 1.01356 1.01797 1.21005 0.95490 0.96266 0.97581 1.21734 1.01338 0.95657 1.00021 1.21886 0.93127 1.00954 0.98744 1.21133 0.95371 0.94104 0.85417 0.91842 1.21069 0.84377 0.97662 0.94873 1.42491 1.03421 1.75821 1.16594 1.19639 0.90887 1.32179 0.94880 0.90487 1.25552 0.97619 1.03395 0.99996 1.69842 1.08358 1.55563 1.28156 0.85136 0.77515 0.77833 0.79232 1.21332 1.22403 1.19425 1.46019 1.67985 1.13420 1.06544 1.20451 0.76363 0.88077 0.84426 1.90636 1.52065 1.16931 1.84879 1.20210 0.98396 0.93736 0.95591 0.88324 1.21333 1.02985 0.97046 0.91645 1.21603 0.97732 0.98028 0.98017 1.20512 0.97809 1.00018 0.92793 1.20703 0.98206 0.97915 0.95869 1.21969 0.94442 0.93628 1.00382 1.22451 1.01492 1.01751 0.92785 1.23022 0.92427 0.92104 0.99702 1.67274 1.12766 1.09905 1.31860 1.20520 0.96494 0.95556 0.89297 0.91988 0.92932 0.92992 0.92778 0.93922 0.93198 0.93200 0.91545 0.90406 0.94796 0.95115 0.79447 0.94139 0.75273 0.91462 0.91310 0.88623 0.91628 0.89286 0.88037 0.81622 0.81733 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.19 71.98 0.66 -2.58 16 2 C -0.08 -2.49 2.38 -10.80 -0.03 -2.52 16 3 C -0.13 -4.01 8.04 71.98 0.58 -3.43 16 4 C -0.11 -3.24 4.36 30.59 0.13 -3.10 16 5 C 0.15 5.32 2.33 44.99 0.10 5.42 16 6 H 0.06 2.64 5.92 -2.39 -0.01 2.63 16 7 C 0.15 6.11 5.82 86.38 0.50 6.61 16 8 N -0.74 -38.72 5.43 -343.44 -1.87 -40.58 16 9 C -0.24 -13.85 9.99 84.03 0.84 -13.01 16 10 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 11 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 12 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 13 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 N -0.69 -25.11 3.87 -442.53 -1.71 -26.83 16 18 C 0.52 18.59 5.62 87.66 0.49 19.09 16 19 O -0.56 -21.92 10.80 -3.05 -0.03 -21.95 16 20 C -0.06 -1.71 2.71 -12.37 -0.03 -1.75 16 21 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 22 C -0.09 -2.26 4.64 30.61 0.14 -2.12 16 23 C -0.12 -1.98 5.98 30.63 0.18 -1.79 16 24 C -0.07 -1.07 5.68 29.71 0.17 -0.90 16 25 C -0.13 -2.50 5.74 -19.85 -0.11 -2.61 16 26 C -0.08 -1.20 9.75 22.54 0.22 -0.98 16 27 C -0.17 -2.60 10.12 22.31 0.23 -2.37 16 28 C 0.09 1.88 11.19 84.74 0.95 2.83 16 29 N -0.51 -14.24 7.54 -184.00 -1.39 -15.63 16 30 C 0.12 3.10 6.20 42.28 0.26 3.36 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.05 1.85 5.19 -2.39 -0.01 1.83 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 1.82 4.76 -2.39 -0.01 1.81 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.37 21.19 7.33 -92.71 -0.68 20.51 16 43 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.41 15.60 6.93 -92.71 -0.64 14.96 16 45 H 0.07 1.76 7.79 -2.39 -0.02 1.74 16 46 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 49 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.10 0.98 8.13 -2.39 -0.02 0.96 16 51 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 52 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 53 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -70.81 407.12 2.65 -68.16 By element: Atomic # 1 Polarization: 52.25 SS G_CDS: -0.41 Total: 51.83 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 5.76 Total: -3.67 kcal Atomic # 7 Polarization: -138.52 SS G_CDS: -4.68 Total: -143.20 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.03 Total: -21.95 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -70.81 2.65 -68.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271286391.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.998 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds