Wall clock time and date at job start Wed Apr 1 2020 03:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47463 * 2 1 4 4 C 1.53000 * 109.47006 * 239.99733 * 2 1 3 5 5 C 1.52999 * 109.47028 * 120.00080 * 2 1 3 6 6 N 1.46900 * 109.47145 * 35.24164 * 5 2 1 7 7 C 1.46939 * 111.00020 * 69.10509 * 6 5 2 8 8 C 1.53519 * 109.59066 * 52.62060 * 7 6 5 9 9 C 1.50882 * 107.83005 * 49.11734 * 8 7 6 10 10 C 1.38971 * 128.57730 * 164.54472 * 9 8 7 11 11 C 1.38138 * 106.93183 * 180.27544 * 10 9 8 12 12 C 1.46676 * 126.19508 * 179.84808 * 11 10 9 13 13 O 1.21685 * 120.00213 * 359.68472 * 12 11 10 14 14 N 1.34782 * 119.99817 * 179.68802 * 12 11 10 15 15 C 1.47580 * 134.49149 * 179.97438 * 14 12 11 16 16 C 1.53952 * 86.11554 * 155.36076 * 15 14 12 17 17 C 1.50694 * 113.74007 * 137.95428 * 16 15 14 18 18 H 1.07995 * 120.00360 * 1.64999 * 17 16 15 19 19 C 1.37878 * 119.99696 * 181.92446 * 17 16 15 20 20 N 1.31515 * 120.00159 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00201 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47109 * 90.00084 * 21 19 17 23 23 H 1.48498 * 109.47241 * 210.00422 * 21 19 17 24 24 H 1.48502 * 109.46748 * 329.99840 * 21 19 17 25 25 C 1.47812 * 134.45450 * 359.86333 * 14 12 11 26 26 N 1.37882 * 107.60621 * 359.57992 * 11 10 9 27 27 H 0.97007 * 125.69126 * 180.19054 * 26 11 10 28 28 C 1.34909 * 108.61900 * 0.19921 * 26 11 10 29 29 C 1.47248 * 111.00147 * 193.71140 * 6 5 2 30 30 H 1.09001 * 109.47350 * 304.61756 * 1 2 3 31 31 H 1.09003 * 109.46849 * 64.61272 * 1 2 3 32 32 H 1.08999 * 109.47535 * 184.61698 * 1 2 3 33 33 H 1.09004 * 109.47664 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47292 * 300.00099 * 3 2 1 35 35 H 1.09000 * 109.47251 * 59.99532 * 3 2 1 36 36 H 1.08995 * 109.47171 * 278.02262 * 4 2 1 37 37 H 1.08996 * 109.47424 * 38.02624 * 4 2 1 38 38 H 1.09000 * 109.46805 * 158.02539 * 4 2 1 39 39 H 1.09005 * 109.47058 * 275.24253 * 5 2 1 40 40 H 1.08997 * 109.47381 * 155.24652 * 5 2 1 41 41 H 1.08994 * 109.45341 * 172.65953 * 7 6 5 42 42 H 1.09008 * 109.44699 * 292.58394 * 7 6 5 43 43 H 1.09002 * 109.78443 * 168.69829 * 8 7 6 44 44 H 1.08998 * 109.79050 * 289.47655 * 8 7 6 45 45 H 1.07999 * 126.53499 * 0.15055 * 10 9 8 46 46 H 1.09000 * 113.76576 * 41.06027 * 15 14 12 47 47 H 1.08996 * 113.77363 * 269.66113 * 15 14 12 48 48 H 1.09005 * 113.74095 * 269.16040 * 16 15 14 49 49 H 0.96998 * 120.00153 * 179.97438 * 20 19 17 50 50 H 1.09007 * 113.76495 * 90.38504 * 25 14 12 51 51 H 1.08994 * 113.84336 * 318.92112 * 25 14 12 52 52 H 1.08998 * 109.70406 * 167.58123 * 29 6 5 53 53 H 1.09000 * 109.69976 * 46.97544 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 7 1.1367 -1.8327 1.5760 7 6 1.2308 -2.9006 0.5710 8 6 2.6997 -3.3082 0.3890 9 6 3.2879 -3.5400 1.7590 10 6 4.4681 -4.1917 2.0964 11 6 4.5705 -4.1513 3.4734 12 6 5.6572 -4.7194 4.2782 13 8 6.5796 -5.2970 3.7339 14 7 5.6340 -4.6017 5.6206 15 6 6.5271 -5.0358 6.7124 16 6 5.9213 -3.8784 7.5271 17 6 5.6174 -4.2380 8.9586 18 1 5.8522 -5.2250 9.3290 19 6 5.0344 -3.3089 9.7939 20 7 4.7696 -3.6225 11.0434 21 14 4.6219 -1.6040 9.1514 22 1 3.2440 -1.6036 8.5979 23 1 4.7096 -0.6219 10.2618 24 1 5.5844 -1.2312 8.0837 25 6 4.7044 -3.9841 6.5898 26 7 3.4692 -3.4748 3.9538 27 1 3.2795 -3.2933 4.8876 28 6 2.6995 -3.1075 2.9085 29 6 1.3974 -2.3434 2.9322 30 1 -0.3634 0.5838 0.8457 31 1 -0.3633 0.4406 -0.9285 32 1 -0.3634 -1.0243 0.0827 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.0258 -1.7977 -1.0784 37 1 1.3979 -0.4793 -2.0961 38 1 3.0596 -0.4007 -1.4630 39 1 2.0725 -0.0219 2.0847 40 1 3.0409 -1.1097 1.0614 41 1 0.6532 -3.7633 0.9029 42 1 0.8334 -2.5415 -0.3784 43 1 2.7582 -4.2250 -0.1977 44 1 3.2439 -2.5109 -0.1171 45 1 5.1702 -4.6453 1.4125 46 1 7.5866 -4.9090 6.4900 47 1 6.2894 -6.0231 7.1083 48 1 6.4689 -2.9407 7.4315 49 1 4.3598 -2.9687 11.6311 50 1 3.9305 -4.6622 6.9495 51 1 4.3111 -3.0193 6.2697 52 1 0.5878 -3.0064 3.2372 53 1 1.4732 -1.5098 3.6304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278112009.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:05 Heat of formation + Delta-G solvation = 38.254792 kcal Electronic energy + Delta-G solvation = -31362.615920 eV Core-core repulsion = 27428.572565 eV Total energy + Delta-G solvation = -3934.043355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.90437 -41.10107 -39.97628 -38.72557 -36.48846 -34.72519 -33.66939 -31.87062 -30.74357 -30.41942 -28.05328 -27.96332 -27.85053 -27.19884 -26.95980 -24.97430 -23.31438 -22.54389 -21.44076 -20.59261 -20.20332 -19.27175 -19.04359 -18.61873 -17.42442 -16.89736 -16.78685 -16.65496 -16.29061 -16.05338 -15.79480 -15.24171 -15.11684 -14.90956 -14.70255 -14.56752 -14.40517 -14.24202 -14.04581 -13.85913 -13.62844 -13.54473 -13.36999 -13.27893 -13.02239 -12.83091 -12.61411 -12.57972 -12.36820 -12.29569 -12.23444 -11.96840 -11.92609 -11.74772 -11.40752 -11.40054 -11.36399 -11.07299 -11.04202 -10.75783 -9.97863 -9.79482 -9.35283 -8.98518 -8.31862 -6.40738 0.33186 1.32642 1.39909 1.47128 1.55374 1.72140 1.98521 2.26130 2.32591 2.93348 2.97778 3.39567 3.71948 3.85006 3.88324 3.99762 4.03039 4.04739 4.12984 4.18479 4.23147 4.33242 4.36475 4.38603 4.44846 4.53230 4.63063 4.64058 4.67312 4.70618 4.72726 4.79789 4.86920 4.87264 4.91305 4.98766 5.03635 5.07962 5.12621 5.15599 5.20760 5.25586 5.29634 5.38261 5.46781 5.52170 5.63058 5.70513 5.72643 5.86014 6.06764 6.10720 6.22134 6.33740 6.59443 6.68690 6.97632 7.26461 8.83625 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.002924 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.790759 B = 9574.277829 C =10948.030790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.166 4.166 5 C 0.054 3.946 6 N -0.507 5.507 7 C 0.046 3.954 8 C -0.084 4.084 9 C -0.185 4.185 10 C -0.107 4.107 11 C -0.074 4.074 12 C 0.597 3.403 13 O -0.586 6.586 14 N -0.642 5.642 15 C 0.120 3.880 16 C -0.010 4.010 17 C -0.516 4.516 18 H 0.043 0.957 19 C 0.024 3.976 20 N -0.941 5.941 21 Si 0.931 3.069 22 H -0.249 1.249 23 H -0.290 1.290 24 H -0.248 1.248 25 C 0.091 3.909 26 N -0.519 5.519 27 H 0.420 0.580 28 C 0.022 3.978 29 C 0.119 3.881 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.269 0.731 50 H 0.095 0.905 51 H 0.075 0.925 52 H 0.111 0.889 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 9.048 -24.477 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.062 4.062 3 C -0.198 4.198 4 C -0.223 4.223 5 C -0.074 4.074 6 N -0.227 5.227 7 C -0.082 4.082 8 C -0.122 4.122 9 C -0.191 4.191 10 C -0.134 4.134 11 C -0.187 4.187 12 C 0.390 3.610 13 O -0.468 6.468 14 N -0.376 5.376 15 C -0.001 4.001 16 C -0.030 4.030 17 C -0.554 4.554 18 H 0.061 0.939 19 C -0.176 4.176 20 N -0.579 5.579 21 Si 0.755 3.245 22 H -0.173 1.173 23 H -0.216 1.216 24 H -0.172 1.172 25 C -0.032 4.032 26 N -0.117 5.117 27 H 0.262 0.738 28 C -0.100 4.100 29 C -0.010 4.010 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.159 0.841 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.113 0.887 51 H 0.093 0.907 52 H 0.129 0.871 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.704 8.988 -24.607 29.115 hybrid contribution 1.218 0.013 1.142 1.670 sum -11.486 9.000 -23.464 27.632 Atomic orbital electron populations 1.21743 0.93263 1.02793 1.00428 1.20498 0.96896 0.94802 0.93955 1.21896 1.00522 0.95403 1.02005 1.22465 1.00750 1.02072 0.97024 1.22343 0.94327 0.92572 0.98170 1.62625 1.50732 1.08631 1.00758 1.22584 0.94271 0.94153 0.97173 1.20930 0.97230 1.02538 0.91543 1.19451 0.96938 1.06784 0.95887 1.21013 0.98648 1.01928 0.91766 1.20236 0.92859 1.11556 0.94081 1.17139 0.84802 0.78778 0.80289 1.90746 1.37532 1.46727 1.71769 1.50273 1.27543 1.56479 1.03267 1.23223 0.95074 0.99458 0.82377 1.20930 0.93173 0.95945 0.92929 1.20944 1.40669 0.99792 0.93991 0.93869 1.25834 0.94625 1.02616 0.94487 1.70031 1.43716 1.37186 1.06990 0.85957 0.80535 0.79148 0.78906 1.17330 1.21584 1.17204 1.23984 0.96256 0.96816 0.86104 1.42090 1.17443 1.42458 1.09696 0.73821 1.22063 0.97644 1.03415 0.86842 1.21211 0.89210 0.97747 0.92848 0.93580 0.93355 0.91057 0.93315 0.91933 0.92811 0.90229 0.91943 0.93320 0.91508 0.94398 0.90155 0.87303 0.89750 0.89858 0.84124 0.90775 0.90016 0.91592 0.92195 0.88677 0.90668 0.87139 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 7.88 71.98 0.57 -0.89 16 2 C -0.06 -0.75 0.77 -52.18 -0.04 -0.79 16 3 C -0.14 -1.73 8.24 71.98 0.59 -1.13 16 4 C -0.17 -1.85 7.59 71.98 0.55 -1.31 16 5 C 0.05 0.81 4.00 86.30 0.35 1.16 16 6 N -0.51 -7.13 3.54 -898.10 -3.18 -10.31 16 7 C 0.05 0.58 4.76 86.47 0.41 1.00 16 8 C -0.08 -1.36 5.03 30.08 0.15 -1.21 16 9 C -0.18 -4.31 5.30 -20.11 -0.11 -4.42 16 10 C -0.11 -3.17 10.63 22.42 0.24 -2.93 16 11 C -0.07 -2.45 7.01 40.37 0.28 -2.17 16 12 C 0.60 23.53 8.02 86.45 0.69 24.22 16 13 O -0.59 -26.69 17.61 -4.30 -0.08 -26.77 16 14 N -0.64 -24.42 3.61 -840.82 -3.04 -27.45 16 15 C 0.12 4.75 8.39 86.49 0.73 5.48 16 16 C -0.01 -0.43 2.90 -10.87 -0.03 -0.46 16 17 C -0.52 -26.35 9.33 25.60 0.24 -26.11 16 18 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 19 C 0.02 1.23 5.47 84.65 0.46 1.69 16 20 N -0.94 -54.07 13.96 21.45 0.30 -53.77 16 21 Si 0.93 38.40 26.97 68.60 1.85 40.25 16 22 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.25 -9.57 6.29 99.48 0.63 -8.95 16 25 C 0.09 3.22 6.11 86.45 0.53 3.75 16 26 N -0.52 -13.76 5.87 -171.19 -1.00 -14.76 16 27 H 0.42 10.27 5.77 -92.70 -0.53 9.74 16 28 C 0.02 0.49 6.73 41.70 0.28 0.77 16 29 C 0.12 1.88 6.17 85.58 0.53 2.41 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.51 8.03 -2.39 -0.02 0.49 16 32 H 0.07 0.84 5.64 -2.39 -0.01 0.83 16 33 H 0.05 0.64 8.12 -2.38 -0.02 0.62 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.05 0.67 8.12 -2.39 -0.02 0.65 16 36 H 0.08 0.84 2.82 -2.39 -0.01 0.83 16 37 H 0.06 0.61 7.88 -2.39 -0.02 0.59 16 38 H 0.05 0.59 7.94 -2.39 -0.02 0.57 16 39 H 0.07 1.07 7.58 -2.38 -0.02 1.06 16 40 H 0.04 0.70 5.19 -2.39 -0.01 0.69 16 41 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 42 H 0.11 1.08 4.71 -2.38 -0.01 1.07 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.32 4.96 -2.39 -0.01 1.31 16 45 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 46 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 47 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 48 H 0.07 2.76 6.70 -2.38 -0.02 2.74 16 49 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 50 H 0.10 3.32 8.09 -2.38 -0.02 3.30 16 51 H 0.08 2.30 6.34 -2.39 -0.02 2.28 16 52 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 53 H 0.10 1.38 7.84 -2.39 -0.02 1.37 16 Total: -1.00 -64.98 393.41 1.58 -63.39 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.31 Total: 30.36 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 6.42 Total: -0.95 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -6.92 Total: -106.29 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.08 Total: -26.77 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.85 Total: 40.25 kcal Total: -64.98 1.58 -63.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278112009.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.649 kcal (2) G-P(sol) polarization free energy of solvation -64.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds