Wall clock time and date at job start Wed Apr 1 2020 04:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47291 * 2 1 4 4 H 1.09002 * 109.47120 * 54.99637 * 3 2 1 5 5 C 1.53003 * 109.47183 * 294.99618 * 3 2 1 6 6 C 1.52998 * 109.47384 * 174.99891 * 3 2 1 7 7 N 1.46905 * 109.47453 * 184.06386 * 6 3 2 8 8 C 1.46938 * 110.99910 * 70.88289 * 7 6 3 9 9 C 1.53517 * 109.59164 * 52.62880 * 8 7 6 10 10 C 1.50883 * 107.83205 * 49.11038 * 9 8 7 11 11 C 1.38977 * 128.57761 * 164.55005 * 10 9 8 12 12 C 1.38137 * 106.92804 * 180.27308 * 11 10 9 13 13 C 1.46672 * 126.19577 * 179.84475 * 12 11 10 14 14 O 1.21694 * 119.99832 * 359.68727 * 13 12 11 15 15 N 1.34777 * 120.00205 * 179.69195 * 13 12 11 16 16 C 1.47578 * 134.49166 * 180.02562 * 15 13 12 17 17 C 1.53944 * 86.11854 * 155.35608 * 16 15 13 18 18 C 1.50694 * 113.74335 * 137.95212 * 17 16 15 19 19 H 1.07997 * 120.00368 * 1.65264 * 18 17 16 20 20 C 1.37878 * 119.99850 * 181.92354 * 18 17 16 21 21 N 1.31517 * 120.00185 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00111 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47106 * 89.99927 * 22 20 18 24 24 H 1.48499 * 109.47153 * 209.99441 * 22 20 18 25 25 H 1.48492 * 109.47324 * 329.99958 * 22 20 18 26 26 C 1.47810 * 134.45600 * 359.86166 * 15 13 12 27 27 N 1.37892 * 107.61242 * 359.58246 * 12 11 10 28 28 H 0.96998 * 125.69107 * 180.19619 * 27 12 11 29 29 C 1.34905 * 108.60940 * 0.19238 * 27 12 11 30 30 C 1.47249 * 110.99943 * 195.49425 * 7 6 3 31 31 H 1.08996 * 109.46917 * 300.00347 * 1 2 3 32 32 H 1.09001 * 109.46829 * 60.00009 * 1 2 3 33 33 H 1.08995 * 109.47137 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47345 * 239.99875 * 2 1 3 35 35 H 1.09001 * 109.46829 * 119.99991 * 2 1 3 36 36 H 1.09002 * 109.46872 * 65.75278 * 5 3 2 37 37 H 1.09002 * 109.47183 * 185.74553 * 5 3 2 38 38 H 1.08996 * 109.47121 * 305.75349 * 5 3 2 39 39 H 1.09000 * 109.47568 * 64.05908 * 6 3 2 40 40 H 1.08999 * 109.46840 * 304.06154 * 6 3 2 41 41 H 1.09003 * 109.44919 * 172.66369 * 8 7 6 42 42 H 1.09001 * 109.45122 * 292.58929 * 8 7 6 43 43 H 1.09001 * 109.79082 * 168.69358 * 9 8 7 44 44 H 1.09004 * 109.78448 * 289.46978 * 9 8 7 45 45 H 1.07993 * 126.53368 * 0.14810 * 11 10 9 46 46 H 1.09001 * 113.77243 * 41.05648 * 16 15 13 47 47 H 1.09004 * 113.77396 * 269.65796 * 16 15 13 48 48 H 1.09002 * 113.74075 * 269.15302 * 17 16 15 49 49 H 0.96993 * 120.00535 * 179.97438 * 21 20 18 50 50 H 1.09004 * 113.76673 * 90.38735 * 26 15 13 51 51 H 1.08999 * 113.83786 * 318.92068 * 26 15 13 52 52 H 1.08995 * 109.69755 * 167.57495 * 30 7 6 53 53 H 1.08997 * 109.73578 * 46.99269 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5649 1.4443 0.1257 7 7 4.0465 2.8287 0.2236 8 6 3.6900 3.4198 1.5208 9 6 4.1662 2.5000 2.6539 10 6 5.6073 2.1433 2.3847 11 6 6.5401 1.5902 3.2538 12 6 7.7189 1.4557 2.5463 13 6 8.9819 0.9170 3.0618 14 8 9.0572 0.5426 4.2173 15 7 10.0592 0.8366 2.2559 16 6 11.4467 0.3643 2.4281 17 6 11.4455 0.1315 0.9064 18 6 12.7195 0.5611 0.2258 19 1 13.5349 0.9621 0.8096 20 6 12.8422 0.4474 -1.1428 21 7 13.9538 0.8228 -1.7368 22 14 11.4288 -0.2384 -2.1534 23 1 10.5372 0.8718 -2.5748 24 1 11.9671 -0.9244 -3.3555 25 1 10.6587 -1.2077 -1.3335 26 6 10.3238 1.1838 0.8437 27 7 7.4916 1.9142 1.2658 28 1 8.1441 1.9362 0.5485 29 6 6.2102 2.3267 1.1774 30 6 5.4964 2.9016 -0.0226 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5499 2.2167 -1.3494 37 1 2.0844 3.1187 -1.3524 38 1 1.9835 1.5314 -2.1517 39 1 4.0025 0.9685 -0.7519 40 1 3.8563 0.8941 1.0204 41 1 4.1681 4.3944 1.6192 42 1 2.6081 3.5389 1.5803 43 1 4.0869 3.0195 3.6089 44 1 3.5588 1.5952 2.6746 45 1 6.3754 1.3192 4.2861 46 1 11.5296 -0.5520 3.0126 47 1 12.1384 1.1416 2.7531 48 1 11.1250 -0.8690 0.6158 49 1 14.0403 0.7425 -2.6996 50 1 10.6846 2.2025 0.7019 51 1 9.5119 0.9205 0.1658 52 1 5.7933 3.9408 -0.1638 53 1 5.7483 2.3235 -0.9117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278135034.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:13 Heat of formation + Delta-G solvation = 19.863257 kcal Electronic energy + Delta-G solvation = -30903.876931 eV Core-core repulsion = 26969.036059 eV Total energy + Delta-G solvation = -3934.840871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.86121 -41.03183 -39.50874 -38.69551 -36.63262 -34.72565 -33.60836 -31.96388 -31.22278 -30.40332 -29.87163 -27.89388 -27.33978 -27.07918 -25.26067 -24.59142 -23.17211 -22.36784 -21.45545 -20.63967 -20.55311 -19.47500 -19.22299 -18.62949 -17.48701 -16.89746 -16.80594 -16.51686 -16.26484 -15.99762 -15.86166 -15.59289 -15.23799 -14.96829 -14.82696 -14.57671 -14.29485 -14.08971 -14.06190 -13.83839 -13.62785 -13.56352 -13.45292 -13.28631 -13.05815 -12.82449 -12.68604 -12.66088 -12.59060 -12.31071 -12.11176 -11.92627 -11.89407 -11.74843 -11.40942 -11.38572 -11.33767 -11.24581 -11.04477 -10.75735 -9.98743 -9.80337 -9.35981 -8.99885 -8.31730 -6.40630 0.32670 1.32774 1.40009 1.47278 1.54674 1.71884 1.97977 2.25719 2.32732 2.91390 2.97830 3.39276 3.70693 3.84908 3.88727 4.00075 4.05171 4.11447 4.13853 4.18478 4.23440 4.33265 4.36653 4.38853 4.43696 4.49558 4.56269 4.62969 4.66514 4.67952 4.71813 4.75131 4.80488 4.86431 4.91043 4.94138 5.01966 5.09478 5.14356 5.19484 5.24788 5.27671 5.29623 5.31682 5.36436 5.52179 5.58147 5.66543 5.70629 5.84739 6.06758 6.09616 6.22163 6.33196 6.59270 6.68666 6.97353 7.26518 8.83714 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.002800 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.506791 B = 9998.494197 C =11337.151280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.078 4.078 4 H 0.075 0.925 5 C -0.136 4.136 6 C 0.050 3.950 7 N -0.512 5.512 8 C 0.055 3.945 9 C -0.076 4.076 10 C -0.186 4.186 11 C -0.106 4.106 12 C -0.074 4.074 13 C 0.597 3.403 14 O -0.586 6.586 15 N -0.643 5.643 16 C 0.120 3.880 17 C -0.010 4.010 18 C -0.516 4.516 19 H 0.043 0.957 20 C 0.023 3.977 21 N -0.940 5.940 22 Si 0.932 3.068 23 H -0.249 1.249 24 H -0.290 1.290 25 H -0.248 1.248 26 C 0.091 3.909 27 N -0.519 5.519 28 H 0.421 0.579 29 C 0.022 3.978 30 C 0.121 3.879 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.269 0.731 50 H 0.095 0.905 51 H 0.075 0.925 52 H 0.110 0.890 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.891 4.498 -0.006 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.097 4.097 4 H 0.093 0.907 5 C -0.193 4.193 6 C -0.078 4.078 7 N -0.233 5.233 8 C -0.072 4.072 9 C -0.115 4.115 10 C -0.192 4.192 11 C -0.133 4.133 12 C -0.187 4.187 13 C 0.390 3.610 14 O -0.468 6.468 15 N -0.376 5.376 16 C -0.002 4.002 17 C -0.030 4.030 18 C -0.554 4.554 19 H 0.061 0.939 20 C -0.176 4.176 21 N -0.579 5.579 22 Si 0.755 3.245 23 H -0.173 1.173 24 H -0.216 1.216 25 H -0.172 1.172 26 C -0.032 4.032 27 N -0.117 5.117 28 H 0.262 0.738 29 C -0.100 4.100 30 C -0.009 4.009 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.159 0.841 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.113 0.887 51 H 0.093 0.907 52 H 0.128 0.872 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -29.001 4.609 0.057 29.365 hybrid contribution 1.349 -0.943 0.068 1.647 sum -27.652 3.666 0.125 27.895 Atomic orbital electron populations 1.21772 0.95076 1.01670 1.02173 1.21556 0.96583 0.96224 1.01535 1.21071 0.93279 0.95944 0.99400 0.90708 1.21727 1.00678 1.00967 0.95911 1.22323 0.96171 0.88551 1.00727 1.62506 1.10228 1.19057 1.31460 1.22333 1.02211 0.97337 0.85350 1.20731 0.89238 1.00671 1.00847 1.19469 0.97809 1.09149 0.92754 1.21016 0.90711 1.01882 0.99715 1.20242 0.95896 1.15481 0.87115 1.17135 0.82196 0.77656 0.84018 1.90749 1.84837 1.52854 1.18322 1.50271 1.10890 1.62466 1.13946 1.23226 0.79906 0.98904 0.98114 1.20922 0.93755 0.95681 0.92618 1.20939 0.99579 1.42383 0.92482 0.93884 1.25836 0.98075 0.94631 0.99051 1.70029 1.28293 1.48699 1.10871 0.85953 0.80046 0.80210 0.78320 1.17331 1.21584 1.17198 1.23980 0.97710 1.01991 0.79489 1.42090 1.11514 1.47501 1.10589 0.73807 1.22059 0.84389 1.03396 1.00106 1.21191 0.85999 1.01954 0.91723 0.92514 0.92153 0.92856 0.92425 0.92738 0.92658 0.91818 0.93705 0.91603 0.94420 0.90130 0.88235 0.89793 0.90655 0.84112 0.90757 0.90005 0.91586 0.92201 0.88671 0.90662 0.87183 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 71.98 0.70 -0.85 16 2 C -0.12 -1.47 5.40 30.59 0.17 -1.31 16 3 C -0.08 -0.94 2.37 -10.79 -0.03 -0.96 16 4 H 0.07 0.85 6.72 -2.39 -0.02 0.83 16 5 C -0.14 -1.58 8.75 71.98 0.63 -0.95 16 6 C 0.05 0.74 3.77 86.30 0.33 1.07 16 7 N -0.51 -7.28 4.22 -898.10 -3.79 -11.07 16 8 C 0.06 0.72 5.63 86.47 0.49 1.21 16 9 C -0.08 -1.25 5.69 30.08 0.17 -1.08 16 10 C -0.19 -4.37 5.33 -20.11 -0.11 -4.48 16 11 C -0.11 -3.17 10.63 22.42 0.24 -2.94 16 12 C -0.07 -2.46 7.01 40.37 0.28 -2.17 16 13 C 0.60 23.56 8.02 86.45 0.69 24.25 16 14 O -0.59 -26.70 17.61 -4.33 -0.08 -26.78 16 15 N -0.64 -24.44 3.61 -840.92 -3.04 -27.48 16 16 C 0.12 4.75 8.39 86.49 0.73 5.47 16 17 C -0.01 -0.43 2.90 -10.89 -0.03 -0.46 16 18 C -0.52 -26.33 9.33 25.60 0.24 -26.09 16 19 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 20 C 0.02 1.21 5.47 84.65 0.46 1.67 16 21 N -0.94 -54.02 13.96 21.45 0.30 -53.72 16 22 Si 0.93 38.38 26.96 68.60 1.85 40.23 16 23 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 24 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.25 -9.56 6.29 99.48 0.63 -8.93 16 26 C 0.09 3.21 6.10 86.44 0.53 3.74 16 27 N -0.52 -13.79 5.87 -171.19 -1.00 -14.80 16 28 H 0.42 10.29 5.77 -92.71 -0.53 9.76 16 29 C 0.02 0.50 6.74 41.70 0.28 0.78 16 30 C 0.12 1.91 6.16 85.58 0.53 2.44 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.58 6.70 -2.39 -0.02 0.57 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.57 6.85 -2.39 -0.02 0.55 16 37 H 0.06 0.81 7.57 -2.39 -0.02 0.80 16 38 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 1.05 7.79 -2.39 -0.02 1.03 16 40 H 0.04 0.68 5.32 -2.39 -0.01 0.67 16 41 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 42 H 0.10 0.99 6.89 -2.39 -0.02 0.97 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.21 6.78 -2.38 -0.02 1.20 16 45 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 46 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 47 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 48 H 0.07 2.76 6.70 -2.39 -0.02 2.75 16 49 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 50 H 0.10 3.33 8.09 -2.38 -0.02 3.31 16 51 H 0.08 2.30 6.34 -2.39 -0.02 2.28 16 52 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 53 H 0.10 1.39 7.82 -2.39 -0.02 1.37 16 Total: -1.00 -64.91 405.18 0.82 -64.09 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.29 Total: 30.18 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.29 Total: -0.65 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -7.53 Total: -107.07 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.08 Total: -26.78 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.85 Total: 40.23 kcal Total: -64.91 0.82 -64.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278135034.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.951 kcal (2) G-P(sol) polarization free energy of solvation -64.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds