Wall clock time and date at job start Wed Apr 1 2020 04:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46833 * 145.56295 * 3 2 1 5 5 C 1.34779 * 120.00107 * 276.06542 * 4 3 2 6 6 O 1.21287 * 119.99772 * 5.23126 * 5 4 3 7 7 C 1.50697 * 120.00164 * 185.23272 * 5 4 3 8 8 H 1.09005 * 109.57719 * 54.66540 * 7 5 4 9 9 C 1.53144 * 109.57739 * 294.40191 * 7 5 4 10 10 N 1.46902 * 109.36696 * 240.20640 * 9 7 5 11 11 C 1.46947 * 111.06092 * 297.99254 * 10 9 7 12 12 C 1.53132 * 109.34565 * 61.95719 * 11 10 9 13 13 C 1.53381 * 109.57736 * 175.06033 * 7 5 4 14 14 C 1.53390 * 108.59955 * 60.83644 * 13 7 5 15 15 C 1.46942 * 111.06048 * 61.99395 * 10 9 7 16 16 C 1.46504 * 120.00033 * 96.06611 * 4 3 2 17 17 C 1.53042 * 109.45818 * 59.99928 * 16 4 3 18 18 C 1.53190 * 109.30909 * 178.61354 * 17 16 4 19 19 N 1.46930 * 108.77422 * 54.63564 * 18 17 16 20 20 C 1.36939 * 120.62644 * 126.36697 * 19 18 17 21 21 H 1.07994 * 120.00284 * 326.23280 * 20 19 18 22 22 C 1.38815 * 119.99549 * 145.95413 * 20 19 18 23 23 N 1.31625 * 120.00314 * 348.39367 * 22 20 19 24 24 Si 1.86796 * 120.00013 * 168.39056 * 22 20 19 25 25 H 1.48505 * 109.47020 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47336 * 119.99764 * 24 22 20 27 27 H 1.48499 * 109.47585 * 240.00335 * 24 22 20 28 28 C 1.46920 * 118.73890 * 306.64024 * 19 18 17 29 29 C 1.52756 * 109.01062 * 53.31010 * 28 19 18 30 30 H 4.40638 * 5.51419 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.47469 * 25.56385 * 3 2 1 32 32 H 1.08994 * 109.46907 * 265.55972 * 3 2 1 33 33 H 1.08991 * 109.49041 * 0.17710 * 9 7 5 34 34 H 1.08999 * 109.48411 * 120.21658 * 9 7 5 35 35 H 1.08997 * 109.49540 * 181.92180 * 11 10 9 36 36 H 1.09000 * 109.48830 * 301.99962 * 11 10 9 37 37 H 1.09004 * 109.57189 * 240.25691 * 12 11 10 38 38 H 1.09000 * 109.67550 * 119.94165 * 12 11 10 39 39 H 1.09007 * 110.11780 * 300.19431 * 13 7 5 40 40 H 1.09006 * 109.57101 * 299.18905 * 14 13 7 41 41 H 1.09000 * 109.68238 * 178.86848 * 14 13 7 42 42 H 1.09005 * 109.48876 * 57.99908 * 15 10 9 43 43 H 1.09000 * 109.49017 * 178.04521 * 15 10 9 44 44 H 1.09001 * 109.44474 * 179.97438 * 16 4 3 45 45 H 1.09000 * 109.49457 * 58.66517 * 17 16 4 46 46 H 1.08994 * 109.52521 * 298.57994 * 17 16 4 47 47 H 1.08995 * 109.58911 * 294.84589 * 18 17 16 48 48 H 1.09002 * 109.70140 * 174.49017 * 18 17 16 49 49 H 0.96996 * 120.00027 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.58634 * 173.14779 * 28 19 18 51 51 H 1.09000 * 109.58900 * 293.57022 * 28 19 18 52 52 H 1.08999 * 109.56845 * 185.54979 * 29 28 19 53 53 H 1.09000 * 109.38425 * 65.51283 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1401 -0.7811 5 6 3.2421 1.0417 -2.1209 6 8 2.8475 0.0458 -2.6897 7 6 3.8536 2.1690 -2.9122 8 1 4.8424 2.3995 -2.5154 9 6 2.9597 3.4086 -2.8144 10 7 2.5113 3.7932 -4.1593 11 6 3.6519 4.1495 -5.0145 12 6 4.5660 2.9314 -5.1744 13 6 3.9709 1.7584 -4.3854 14 6 2.5650 1.4685 -4.9259 15 6 1.7069 2.7274 -4.7727 16 6 3.5038 2.3865 -0.1058 17 6 4.6322 2.1109 0.8906 18 6 5.0399 3.4222 1.5695 19 7 3.8459 4.0376 2.1649 20 6 3.8300 4.3931 3.4873 21 1 4.3718 3.8031 4.2116 22 6 3.1222 5.5151 3.8958 23 7 2.6594 6.3630 3.0017 24 14 2.8265 5.8218 5.7146 25 1 3.4451 4.7293 6.5078 26 1 3.4342 7.1199 6.1029 27 1 1.3658 5.8602 5.9791 28 6 2.6673 4.2588 1.3160 29 6 2.2881 2.9433 0.6386 30 1 -1.0502 -0.0002 0.0004 31 1 3.0098 -0.9262 -0.4434 32 1 3.0093 0.0804 1.0245 33 1 2.0932 3.1839 -2.1926 34 1 3.5232 4.2290 -2.3700 35 1 3.2888 4.4628 -5.9933 36 1 4.2101 4.9653 -4.5550 37 1 5.5578 3.1660 -4.7878 38 1 4.6390 2.6632 -6.2284 39 1 4.5985 0.8720 -4.4787 40 1 2.1178 0.6507 -4.3605 41 1 2.6259 1.1939 -5.9790 42 1 0.8490 2.5078 -4.1372 43 1 1.3593 3.0527 -5.7533 44 1 3.8411 3.1132 -0.8449 45 1 5.4893 1.6925 0.3630 46 1 4.2877 1.4028 1.6443 47 1 5.4694 4.0982 0.8303 48 1 5.7740 3.2195 2.3494 49 1 2.1651 7.1472 3.2873 50 1 1.8354 4.6057 1.9290 51 1 2.8994 5.0046 0.5557 52 1 1.4769 3.1173 -0.0683 53 1 1.9649 2.2273 1.3942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278151784.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:56 Heat of formation + Delta-G solvation = 41.132221 kcal Electronic energy + Delta-G solvation = -33036.576336 eV Core-core repulsion = 29102.657756 eV Total energy + Delta-G solvation = -3933.918580 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.52906 -40.44700 -39.03150 -36.82057 -34.68642 -33.78175 -33.17308 -32.36575 -31.87385 -31.78085 -31.18057 -28.37016 -26.93755 -24.83506 -24.15259 -23.83431 -23.77464 -23.64763 -20.98364 -20.68438 -19.08373 -18.71974 -18.65329 -18.26197 -17.48394 -17.30845 -16.79969 -16.75204 -16.26734 -16.09428 -15.57663 -15.34211 -14.81624 -14.79804 -14.51184 -14.34848 -14.18439 -14.04164 -13.93130 -13.67324 -13.20984 -13.16005 -13.13465 -13.07547 -12.97575 -12.94956 -12.67474 -12.49480 -12.48351 -12.22694 -11.99928 -11.97021 -11.85215 -11.57918 -11.51576 -11.33775 -11.26581 -11.12080 -11.05473 -10.55497 -10.45350 -9.81377 -9.19446 -8.57065 -7.85488 -5.37155 1.37040 1.46908 1.49831 1.57151 1.58732 1.89329 2.35656 2.52201 2.99124 3.28981 3.34230 3.50238 3.52625 3.69554 3.76342 3.81648 3.94895 4.03394 4.07930 4.19599 4.24169 4.26685 4.31773 4.36993 4.37954 4.47240 4.48579 4.50769 4.60704 4.69571 4.78281 4.79773 4.90280 4.97426 4.98188 5.02692 5.05540 5.06798 5.11404 5.13263 5.17424 5.20863 5.21799 5.35115 5.38555 5.46528 5.55577 5.69248 5.74461 6.06020 6.14582 6.34268 6.45597 6.65975 7.09869 7.19629 7.88080 8.41514 9.20779 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.003584 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.044876 B = 7809.651043 C = 8699.844752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.225 4.225 3 C 0.223 3.777 4 N -0.597 5.597 5 C 0.522 3.478 6 O -0.561 6.561 7 C -0.134 4.134 8 H 0.113 0.887 9 C 0.068 3.932 10 N -0.537 5.537 11 C 0.049 3.951 12 C -0.141 4.141 13 C -0.064 4.064 14 C -0.157 4.157 15 C 0.055 3.945 16 C 0.149 3.851 17 C -0.131 4.131 18 C 0.145 3.855 19 N -0.607 5.607 20 C -0.263 4.263 21 H 0.064 0.936 22 C -0.041 4.041 23 N -0.931 5.931 24 Si 0.960 3.040 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.293 1.293 28 C 0.189 3.811 29 C -0.125 4.125 30 H 0.241 0.759 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.024 0.976 48 H 0.059 0.941 49 H 0.249 0.751 50 H 0.044 0.956 51 H 0.006 0.994 52 H 0.051 0.949 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -9.505 -15.562 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.226 4.226 3 C 0.101 3.899 4 N -0.327 5.327 5 C 0.312 3.688 6 O -0.440 6.440 7 C -0.156 4.156 8 H 0.131 0.869 9 C -0.061 4.061 10 N -0.257 5.257 11 C -0.079 4.079 12 C -0.180 4.180 13 C -0.084 4.084 14 C -0.196 4.196 15 C -0.073 4.073 16 C 0.047 3.953 17 C -0.170 4.170 18 C 0.019 3.981 19 N -0.331 5.331 20 C -0.394 4.394 21 H 0.081 0.919 22 C -0.237 4.237 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.191 1.191 26 H -0.219 1.219 27 H -0.220 1.220 28 C 0.063 3.937 29 C -0.165 4.165 30 H 0.257 0.743 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.024 0.976 52 H 0.070 0.930 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.256 -9.433 -15.780 18.523 hybrid contribution -0.313 -0.280 1.285 1.352 sum 1.944 -9.713 -14.495 17.557 Atomic orbital electron populations 1.25641 0.96868 0.98937 0.99929 1.23957 0.95785 1.01704 1.01187 1.18317 0.83536 0.90198 0.97867 1.48229 1.64001 1.14400 1.06099 1.20996 0.77735 0.88291 0.81763 1.90580 1.50293 1.33801 1.69315 1.22132 1.01839 0.94839 0.96834 0.86871 1.22234 0.97662 0.94675 0.91557 1.62510 1.21983 1.38771 1.02467 1.22337 0.90511 0.97050 0.98009 1.22244 0.99885 0.94838 1.01057 1.20916 0.97326 0.98649 0.91505 1.22438 0.95969 0.99431 1.01763 1.22179 0.95492 0.89595 1.00079 1.21271 0.94814 0.84349 0.94881 1.22293 0.97862 0.98876 0.98004 1.21021 0.89070 0.92074 0.95928 1.44206 1.10034 1.71688 1.07156 1.19454 1.30040 1.05125 0.84741 0.91851 1.25874 1.01743 0.95201 1.00893 1.70126 1.41021 1.12849 1.33629 0.85326 0.77052 0.77587 0.81198 1.19066 1.21859 1.22029 1.20312 0.89991 0.91584 0.91848 1.22204 0.96891 0.98879 0.98531 0.74296 0.88065 0.87029 0.92190 0.89142 0.89349 0.89949 0.90400 0.90000 0.90521 0.91142 0.90943 0.92855 0.89248 0.88060 0.89512 0.91970 0.95791 0.92230 0.94151 0.93782 0.97612 0.93045 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.31 19.25 74.32 1.43 -3.88 16 2 C -0.23 -6.68 12.58 31.13 0.39 -6.29 16 3 C 0.22 5.97 5.07 84.57 0.43 6.40 16 4 N -0.60 -16.27 2.35 -808.14 -1.90 -18.18 16 5 C 0.52 14.54 6.44 87.66 0.56 15.10 16 6 O -0.56 -18.34 13.25 -3.05 -0.04 -18.38 16 7 C -0.13 -3.06 1.76 -11.36 -0.02 -3.08 16 8 H 0.11 2.28 7.76 -2.38 -0.02 2.26 16 9 C 0.07 1.67 4.10 86.35 0.35 2.03 16 10 N -0.54 -12.25 5.22 -895.18 -4.67 -16.93 16 11 C 0.05 0.85 6.09 86.34 0.53 1.38 16 12 C -0.14 -2.23 5.75 30.77 0.18 -2.05 16 13 C -0.06 -1.34 2.63 -10.40 -0.03 -1.37 16 14 C -0.16 -3.55 5.43 30.77 0.17 -3.38 16 15 C 0.05 1.23 6.09 86.34 0.53 1.75 16 16 C 0.15 4.31 1.62 45.02 0.07 4.39 16 17 C -0.13 -3.72 5.32 30.67 0.16 -3.56 16 18 C 0.14 5.29 6.52 86.36 0.56 5.86 16 19 N -0.61 -28.29 2.97 -699.94 -2.08 -30.37 16 20 C -0.26 -13.80 9.54 84.03 0.80 -13.00 16 21 H 0.06 3.26 7.86 -2.91 -0.02 3.24 16 22 C -0.04 -2.21 5.00 84.86 0.42 -1.78 16 23 N -0.93 -53.44 11.34 21.65 0.25 -53.19 16 24 Si 0.96 43.74 29.57 68.60 2.03 45.77 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 28 C 0.19 8.56 5.21 86.22 0.45 9.01 16 29 C -0.13 -4.47 4.81 30.53 0.15 -4.32 16 30 H 0.24 4.68 7.80 -4.41 -0.03 4.64 16 31 H 0.10 2.59 7.69 -2.39 -0.02 2.57 16 32 H 0.11 2.78 6.47 -2.39 -0.02 2.77 16 33 H 0.06 1.76 6.34 -2.39 -0.02 1.74 16 34 H 0.09 2.21 7.46 -2.39 -0.02 2.19 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.07 2.03 5.38 -2.38 -0.01 2.01 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 2.80 4.18 -2.39 -0.01 2.79 16 45 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.06 1.83 6.72 -2.39 -0.02 1.81 16 47 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 49 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 50 H 0.04 2.33 6.38 -2.38 -0.02 2.32 16 51 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 52 H 0.05 1.82 7.46 -2.39 -0.02 1.81 16 53 H 0.05 1.88 7.32 -2.39 -0.02 1.86 16 Total: -1.00 -64.60 393.89 1.60 -63.00 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.89 Total: 25.07 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 7.14 Total: 3.21 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -8.41 Total: -118.66 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.04 Total: -18.38 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -64.60 1.60 -63.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278151784.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.128 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds