Wall clock time and date at job start Wed Apr 1 2020 04:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46895 * 2 1 4 4 H 1.09006 * 109.47205 * 302.13904 * 3 2 1 5 5 C 1.50700 * 109.47237 * 182.14527 * 3 2 1 6 6 O 1.21285 * 119.99732 * 256.87902 * 5 3 2 7 7 N 1.34780 * 120.00400 * 76.87780 * 5 3 2 8 8 C 1.46493 * 120.00036 * 180.02562 * 7 5 3 9 9 C 1.53009 * 109.47061 * 185.43884 * 8 7 5 10 10 H 1.09002 * 109.43488 * 301.81203 * 9 8 7 11 11 C 1.50804 * 109.43554 * 181.89013 * 9 8 7 12 12 C 1.38837 * 117.81033 * 48.51846 * 11 9 8 13 13 C 1.37954 * 120.50909 * 179.34393 * 12 11 9 14 14 C 1.38273 * 119.71637 * 359.97438 * 13 12 11 15 15 C 1.37905 * 119.82729 * 0.21482 * 14 13 12 16 16 C 1.37673 * 122.34601 * 228.28157 * 11 9 8 17 17 C 1.50600 * 122.85573 * 1.62749 * 16 11 9 18 18 C 1.52791 * 110.86137 * 339.76185 * 17 16 11 19 19 N 1.46687 * 109.40042 * 61.70935 * 9 8 7 20 20 C 1.36935 * 121.33690 * 344.47272 * 19 9 8 21 21 H 1.08003 * 119.99766 * 32.22234 * 20 19 9 22 22 C 1.38808 * 120.00233 * 212.21407 * 20 19 9 23 23 N 1.31624 * 119.99757 * 14.90494 * 22 20 19 24 24 Si 1.86799 * 120.00282 * 194.90266 * 22 20 19 25 25 H 1.48492 * 109.47163 * 60.00226 * 24 22 20 26 26 H 1.48502 * 109.47028 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47139 * 299.99999 * 24 22 20 28 28 N 1.46901 * 109.47691 * 62.13912 * 3 2 1 29 29 C 1.46904 * 110.99467 * 55.32352 * 28 3 2 30 30 C 1.46897 * 111.00320 * 179.27494 * 28 3 2 31 31 H 1.09001 * 109.46665 * 184.10998 * 1 2 3 32 32 H 1.08998 * 109.46987 * 304.10730 * 1 2 3 33 33 H 1.08997 * 109.46865 * 64.11141 * 1 2 3 34 34 H 1.08997 * 109.47519 * 239.99864 * 2 1 3 35 35 H 1.08998 * 109.47242 * 119.99740 * 2 1 3 36 36 H 0.97000 * 119.99782 * 359.97438 * 7 5 3 37 37 H 1.08998 * 109.47403 * 65.44278 * 8 7 5 38 38 H 1.08996 * 109.47205 * 305.43665 * 8 7 5 39 39 H 1.08009 * 119.74511 * 359.33778 * 12 11 9 40 40 H 1.07997 * 120.14623 * 180.02562 * 13 12 11 41 41 H 1.08000 * 120.08448 * 180.48947 * 14 13 12 42 42 H 1.08000 * 119.71373 * 180.02562 * 15 14 13 43 43 H 1.08992 * 109.20304 * 100.11960 * 17 16 11 44 44 H 1.09002 * 109.19785 * 219.41011 * 17 16 11 45 45 H 1.08994 * 109.77068 * 287.85464 * 18 17 16 46 46 H 1.08992 * 109.81420 * 167.08741 * 18 17 16 47 47 H 0.97003 * 120.00170 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.47368 * 67.49489 * 29 28 3 49 49 H 1.09000 * 109.47078 * 187.49828 * 29 28 3 50 50 H 1.09007 * 109.47204 * 307.49593 * 29 28 3 51 51 H 1.08999 * 109.47022 * 62.32150 * 30 28 3 52 52 H 1.08997 * 109.47009 * 182.32722 * 30 28 3 53 53 H 1.09002 * 109.46950 * 302.31929 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6456 1.9673 -0.8702 5 6 3.5460 1.4429 -0.0532 6 8 4.1882 1.6687 0.9506 7 7 4.1794 1.1923 -1.2162 8 6 5.6435 1.1922 -1.2677 9 6 6.1028 1.0174 -2.7167 10 1 5.6985 0.0871 -3.1156 11 6 7.6094 0.9708 -2.7633 12 6 8.2592 0.1265 -1.8731 13 6 9.6354 0.0302 -1.8767 14 6 10.3726 0.7803 -2.7744 15 6 9.7285 1.6222 -3.6565 16 6 8.3426 1.7252 -3.6515 17 6 7.7103 2.6848 -4.6249 18 6 6.2360 2.3472 -4.8418 19 7 5.6185 2.1447 -3.5207 20 6 4.6313 2.9751 -3.0611 21 1 4.5452 3.1781 -2.0039 22 6 3.7414 3.5559 -3.9541 23 7 3.6492 3.0963 -5.1841 24 14 2.6748 4.9898 -3.4104 25 1 3.5415 6.1173 -2.9831 26 1 1.8169 5.4254 -4.5416 27 1 1.8176 4.5662 -2.2742 28 7 1.5930 2.1200 1.2244 29 6 2.0132 1.3773 2.4202 30 6 2.0796 3.5054 1.2671 31 1 -0.3633 -1.0251 0.0737 32 1 -0.3633 0.5763 0.8509 33 1 -0.3633 0.4487 -0.9245 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.6659 1.0113 -2.0189 37 1 6.0283 0.3709 -0.6631 38 1 6.0208 2.1378 -0.8785 39 1 7.6828 -0.4594 -1.1723 40 1 10.1348 -0.6287 -1.1819 41 1 11.4498 0.7036 -2.7877 42 1 10.3062 2.2069 -4.3571 43 1 7.7920 3.6986 -4.2332 44 1 8.2354 2.6262 -5.5783 45 1 6.1496 1.4355 -5.4328 46 1 5.7408 3.1695 -5.3580 47 1 3.0271 3.5020 -5.8081 48 1 3.0988 1.4173 2.5100 49 1 1.5588 1.8248 3.3042 50 1 1.6938 0.3387 2.3338 51 1 1.6631 4.0628 0.4282 52 1 1.7693 3.9708 2.2026 53 1 3.1677 3.5104 1.2024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281776573.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:54 Heat of formation + Delta-G solvation = 13.497623 kcal Electronic energy + Delta-G solvation = -32534.307887 eV Core-core repulsion = 28599.190981 eV Total energy + Delta-G solvation = -3935.116906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.55089 -40.77875 -38.32691 -37.45225 -35.76858 -34.22324 -34.10457 -33.22707 -31.50076 -30.33343 -29.06464 -28.36807 -27.73326 -26.29419 -24.22642 -23.98746 -23.65447 -22.66494 -22.02149 -20.87199 -20.50760 -18.62870 -17.96097 -17.63879 -17.32881 -17.14444 -16.44931 -16.28467 -16.02316 -15.91381 -15.69064 -15.59384 -15.33997 -15.02704 -14.62314 -14.50403 -14.06895 -13.96498 -13.87642 -13.62459 -13.49337 -13.22798 -13.09298 -13.03185 -12.86527 -12.78242 -12.71163 -12.58656 -12.51713 -12.41808 -12.21311 -12.05884 -12.03793 -11.89280 -11.58062 -11.48690 -11.30609 -11.15420 -10.58540 -9.81944 -9.61828 -9.37812 -9.13509 -8.61352 -7.86713 -5.36257 0.53438 0.55943 1.40730 1.46306 1.49735 1.65809 2.36010 2.46420 2.92405 2.95200 3.28598 3.50139 3.75512 3.92353 3.95537 4.03535 4.09713 4.09847 4.21633 4.23827 4.30052 4.38472 4.49961 4.50023 4.58107 4.59297 4.64212 4.65070 4.69844 4.76743 4.79734 4.86514 4.94473 4.96589 4.99415 5.08050 5.13122 5.18177 5.21220 5.23465 5.26941 5.40197 5.52688 5.60336 5.62152 5.66404 5.72129 5.73379 5.86464 5.92142 6.01523 6.21747 6.40886 6.67698 7.12190 7.31931 7.78638 8.38165 9.17527 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.004468 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.769612 B = 6264.959512 C = 8024.116206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.065 3.935 4 H 0.094 0.906 5 C 0.484 3.516 6 O -0.582 6.582 7 N -0.692 5.692 8 C 0.150 3.850 9 C 0.200 3.800 10 H 0.038 0.962 11 C -0.102 4.102 12 C -0.126 4.126 13 C -0.128 4.128 14 C -0.123 4.123 15 C -0.134 4.134 16 C -0.075 4.075 17 C -0.096 4.096 18 C 0.166 3.834 19 N -0.595 5.595 20 C -0.239 4.239 21 H 0.063 0.937 22 C -0.027 4.027 23 N -0.919 5.919 24 Si 0.937 3.063 25 H -0.293 1.293 26 H -0.293 1.293 27 H -0.271 1.271 28 N -0.510 5.510 29 C 0.004 3.996 30 C 0.015 3.985 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.133 0.867 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.009 0.991 46 H 0.072 0.928 47 H 0.251 0.749 48 H 0.044 0.956 49 H 0.074 0.926 50 H 0.079 0.921 51 H 0.055 0.945 52 H 0.085 0.915 53 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -7.532 7.469 11.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C -0.047 4.047 4 H 0.112 0.888 5 C 0.270 3.730 6 O -0.464 6.464 7 N -0.342 5.342 8 C 0.025 3.975 9 C 0.093 3.907 10 H 0.055 0.945 11 C -0.104 4.104 12 C -0.145 4.145 13 C -0.146 4.146 14 C -0.141 4.141 15 C -0.152 4.152 16 C -0.075 4.075 17 C -0.135 4.135 18 C 0.040 3.960 19 N -0.318 5.318 20 C -0.369 4.369 21 H 0.081 0.919 22 C -0.224 4.224 23 N -0.564 5.564 24 Si 0.766 3.234 25 H -0.221 1.221 26 H -0.219 1.219 27 H -0.196 1.196 28 N -0.232 5.232 29 C -0.144 4.144 30 C -0.133 4.133 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.247 0.753 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.027 0.973 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.074 0.926 52 H 0.104 0.896 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.906 -7.297 8.037 11.237 hybrid contribution 0.104 1.230 -0.665 1.402 sum 3.010 -6.067 7.372 10.011 Atomic orbital electron populations 1.21621 0.93104 1.02224 1.02466 1.21565 0.98411 0.91477 1.03005 1.21994 0.88029 0.99107 0.95584 0.88805 1.22232 0.92214 0.75791 0.82790 1.90538 1.69136 1.51793 1.34981 1.46223 1.07355 1.68992 1.11592 1.21149 0.80578 1.00165 0.95594 1.19534 0.89497 0.91095 0.90539 0.94461 1.20122 0.95639 0.97682 0.96909 1.21296 0.95671 0.98867 0.98630 1.21343 0.93353 1.00212 0.99679 1.21363 1.00959 0.96307 0.95437 1.21427 0.93156 1.00140 1.00447 1.19750 0.94055 0.96846 0.96889 1.20968 0.97983 0.97090 0.97454 1.20720 0.89436 0.98959 0.86890 1.44122 1.41381 1.29790 1.16547 1.19156 1.04835 1.20264 0.92661 0.91946 1.25496 0.98561 1.01570 0.96776 1.70062 1.38678 1.41907 1.05786 0.85826 0.79138 0.81039 0.77388 1.22051 1.21920 1.19600 1.62553 1.56615 1.02284 1.01733 1.22742 1.00660 0.99131 0.91860 1.22473 0.98325 0.89789 1.02753 0.91231 0.91676 0.93120 0.90727 0.90754 0.75264 0.90888 0.94417 0.85345 0.83495 0.83400 0.84883 0.92563 0.90203 0.97277 0.91012 0.93998 0.93736 0.90755 0.90268 0.92617 0.89628 0.96005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.83 71.98 0.71 -2.19 16 2 C -0.11 -2.61 5.00 30.59 0.15 -2.46 16 3 C 0.07 2.03 2.28 44.17 0.10 2.13 16 4 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 5 C 0.48 17.54 6.20 87.66 0.54 18.08 16 6 O -0.58 -23.63 11.96 -3.04 -0.04 -23.66 16 7 N -0.69 -25.67 3.48 -463.06 -1.61 -27.28 16 8 C 0.15 5.66 4.14 86.38 0.36 6.02 16 9 C 0.20 7.87 3.03 44.25 0.13 8.00 16 10 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 11 C -0.10 -3.63 5.44 -19.82 -0.11 -3.74 16 12 C -0.13 -3.73 9.05 22.35 0.20 -3.52 16 13 C -0.13 -3.15 10.05 22.21 0.22 -2.92 16 14 C -0.12 -2.96 10.04 22.20 0.22 -2.74 16 15 C -0.13 -3.80 9.59 22.37 0.21 -3.59 16 16 C -0.08 -2.64 5.76 -19.85 -0.11 -2.76 16 17 C -0.10 -3.63 5.86 29.75 0.17 -3.45 16 18 C 0.17 7.52 5.61 86.17 0.48 8.00 16 19 N -0.60 -27.42 2.93 -680.13 -1.99 -29.41 16 20 C -0.24 -11.88 7.23 84.03 0.61 -11.27 16 21 H 0.06 3.21 5.71 -2.91 -0.02 3.20 16 22 C -0.03 -1.39 5.01 84.86 0.43 -0.96 16 23 N -0.92 -49.62 11.20 21.65 0.24 -49.38 16 24 Si 0.94 42.92 29.58 68.60 2.03 44.94 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 28 N -0.51 -15.15 4.31 -927.72 -4.00 -19.15 16 29 C 0.00 0.09 8.87 127.69 1.13 1.23 16 30 C 0.02 0.48 9.28 127.69 1.19 1.66 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.42 7.55 -2.39 -0.02 1.41 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.74 6.05 -2.39 -0.01 1.72 16 36 H 0.41 15.76 7.47 -92.71 -0.69 15.06 16 37 H 0.07 2.48 6.55 -2.39 -0.02 2.46 16 38 H 0.04 1.65 7.74 -2.39 -0.02 1.63 16 39 H 0.13 3.39 6.66 -2.91 -0.02 3.37 16 40 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 41 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.13 3.19 8.05 -2.91 -0.02 3.16 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.07 3.68 5.84 -2.39 -0.01 3.67 16 47 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 48 H 0.04 1.44 5.45 -2.39 -0.01 1.43 16 49 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.08 1.86 5.76 -2.38 -0.01 1.85 16 51 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 53 H 0.02 0.81 5.87 -2.39 -0.01 0.80 16 Total: -1.00 -59.87 399.71 1.50 -58.37 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: 0.22 Total: 40.04 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 6.65 Total: 5.53 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -7.36 Total: -125.23 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.04 Total: -23.66 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -59.87 1.50 -58.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281776573.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.871 kcal (2) G-P(sol) polarization free energy of solvation -59.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds