Wall clock time and date at job start Wed Apr 1 2020 03:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47070 * 2 1 4 4 C 1.53004 * 109.47122 * 119.99974 * 2 1 3 5 5 H 1.09002 * 109.46830 * 187.06131 * 4 2 1 6 6 C 1.50702 * 109.46994 * 67.06558 * 4 2 1 7 7 O 1.21283 * 119.99908 * 279.50697 * 6 4 2 8 8 N 1.34771 * 119.99730 * 99.50514 * 6 4 2 9 9 C 1.46504 * 119.99750 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.73016 * 36.94739 * 9 8 6 11 11 C 1.54350 * 110.82236 * 273.54546 * 9 8 6 12 12 C 1.51371 * 105.17043 * 268.12350 * 11 9 8 13 13 C 1.38497 * 130.39080 * 162.81287 * 12 11 9 14 14 C 1.38099 * 120.21080 * 179.97438 * 13 12 11 15 15 C 1.38254 * 119.93873 * 0.02562 * 14 13 12 16 16 C 1.38098 * 119.93576 * 359.97438 * 15 14 13 17 17 C 1.38220 * 109.75530 * 342.80777 * 12 11 9 18 18 C 1.51362 * 109.76315 * 0.02562 * 17 12 11 19 19 H 1.08995 * 110.31078 * 136.11276 * 18 17 12 20 20 N 1.46500 * 110.30153 * 258.26533 * 18 17 12 21 21 C 1.36946 * 119.99934 * 270.74470 * 20 18 17 22 22 H 1.07998 * 119.99721 * 359.97438 * 21 20 18 23 23 C 1.38810 * 120.00047 * 179.97438 * 21 20 18 24 24 N 1.31625 * 119.99999 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99975 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47055 * 59.99670 * 25 23 21 27 27 H 1.48499 * 109.47192 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46938 * 299.99879 * 25 23 21 29 29 N 1.46899 * 109.47235 * 307.06497 * 4 2 1 30 30 C 1.46895 * 111.00036 * 156.43962 * 29 4 2 31 31 C 1.46898 * 110.99946 * 280.39147 * 29 4 2 32 32 H 1.08998 * 109.47322 * 55.01755 * 1 2 3 33 33 H 1.09001 * 109.46986 * 175.01259 * 1 2 3 34 34 H 1.08997 * 109.47442 * 295.01306 * 1 2 3 35 35 H 1.09004 * 109.47472 * 240.00237 * 2 1 3 36 36 H 1.08999 * 109.46876 * 157.15542 * 3 2 1 37 37 H 1.08998 * 109.47104 * 277.15968 * 3 2 1 38 38 H 1.09003 * 109.46919 * 37.16137 * 3 2 1 39 39 H 0.96997 * 120.00534 * 359.97438 * 8 6 4 40 40 H 1.09003 * 110.30263 * 27.04625 * 11 9 8 41 41 H 1.09000 * 110.30462 * 149.10171 * 11 9 8 42 42 H 1.07996 * 119.88916 * 359.97438 * 13 12 11 43 43 H 1.08005 * 120.03243 * 180.02562 * 14 13 12 44 44 H 1.07998 * 120.03381 * 180.02562 * 15 14 13 45 45 H 1.07997 * 119.89695 * 180.02562 * 16 15 14 46 46 H 0.97001 * 120.00506 * 90.74341 * 20 18 17 47 47 H 0.97002 * 119.99791 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.47372 * 52.32109 * 30 29 4 49 49 H 1.08998 * 109.47103 * 172.32429 * 30 29 4 50 50 H 1.09004 * 109.46990 * 292.32501 * 30 29 4 51 51 H 1.09005 * 109.47019 * 73.36719 * 31 29 4 52 52 H 1.09004 * 109.47140 * 193.36814 * 31 29 4 53 53 H 1.09000 * 109.47628 * 313.36790 * 31 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1226 -0.6131 1.3146 6 6 1.6854 -2.1835 1.1650 7 8 0.5675 -2.5541 1.4546 8 7 2.6106 -3.0794 0.7677 9 6 2.2657 -4.5009 0.6852 10 1 1.2425 -4.6298 0.3323 11 6 2.4670 -5.1944 2.0494 12 6 3.8835 -5.7274 2.0176 13 6 4.7073 -6.1483 3.0482 14 6 5.9827 -6.6031 2.7768 15 6 6.4397 -6.6382 1.4724 16 6 5.6197 -6.2189 0.4434 17 6 4.3402 -5.7625 0.7135 18 6 3.2624 -5.2551 -0.2202 19 1 3.6901 -4.5775 -0.9591 20 7 2.5954 -6.3777 -0.8844 21 6 3.0827 -6.8591 -2.0703 22 1 3.9584 -6.4109 -2.5159 23 6 2.4511 -7.9231 -2.6994 24 7 1.3841 -8.4697 -2.1559 25 14 3.1161 -8.5802 -4.3165 26 1 4.5100 -9.0543 -4.1224 27 1 2.2694 -9.7096 -4.7776 28 1 3.0982 -7.4995 -5.3347 29 7 1.4162 -0.1341 2.4426 30 6 1.4134 -1.0889 3.5590 31 6 2.0829 1.1184 2.8229 32 1 -0.3634 0.5892 -0.8420 33 1 -0.3633 -1.0238 -0.0893 34 1 -0.3634 0.4345 0.9312 35 1 1.8934 -0.5138 -0.8900 36 1 3.0539 1.4694 0.3990 37 1 2.0403 1.8278 -1.0196 38 1 1.3889 2.0581 0.6208 39 1 3.5045 -2.7830 0.5356 40 1 2.3518 -4.4749 2.8601 41 1 1.7561 -6.0123 2.1665 42 1 4.3511 -6.1207 4.0674 43 1 6.6226 -6.9311 3.5827 44 1 7.4367 -6.9940 1.2583 45 1 5.9772 -6.2470 -0.5753 46 1 1.8087 -6.7800 -0.4843 47 1 0.9425 -9.2130 -2.5957 48 1 2.4226 -1.4710 3.7129 49 1 1.0725 -0.5878 4.4649 50 1 0.7430 -1.9167 3.3274 51 1 1.8113 1.9033 2.1170 52 1 1.7688 1.4072 3.8260 53 1 3.1632 0.9741 2.8079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281913280.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:28 Heat of formation + Delta-G solvation = 1.336569 kcal Electronic energy + Delta-G solvation = -31744.132604 eV Core-core repulsion = 27808.488355 eV Total energy + Delta-G solvation = -3935.644249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84230 -40.82750 -38.47220 -37.37935 -35.73565 -35.09534 -33.98424 -32.78745 -31.35356 -29.99571 -28.90407 -28.11750 -27.70221 -27.47854 -25.26024 -23.93234 -23.15523 -22.26184 -21.58997 -21.48278 -20.56623 -19.36615 -18.24358 -17.66433 -17.26901 -16.77353 -16.64329 -16.41095 -15.94815 -15.89330 -15.58762 -15.25649 -15.10729 -14.99510 -14.60223 -14.56646 -14.27331 -14.18571 -13.96356 -13.72356 -13.56160 -13.30374 -13.15586 -13.12785 -12.94721 -12.80247 -12.70504 -12.56758 -12.34288 -12.26157 -12.25357 -12.11089 -12.00588 -11.84956 -11.72338 -11.66416 -11.25401 -11.01215 -10.60691 -10.14994 -9.64489 -9.43517 -9.25954 -9.09011 -7.96976 -5.27715 0.53515 0.57626 1.46029 1.48900 1.54684 1.54940 1.99296 2.54592 2.92860 2.96921 3.35399 3.38171 3.63399 3.72410 3.88652 3.96632 4.05134 4.10691 4.16411 4.22230 4.25229 4.29829 4.32142 4.41060 4.45263 4.46705 4.63709 4.66206 4.71030 4.72884 4.80766 4.82468 4.88076 4.90883 4.94563 4.98250 5.07284 5.12010 5.16561 5.18831 5.29155 5.29592 5.44352 5.49739 5.52052 5.60053 5.63556 5.69160 5.87783 5.91140 6.10020 6.19501 6.23356 6.54384 7.23848 7.28958 7.97379 8.22799 9.25783 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010001 B = 0.003510 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.156784 B = 7976.140953 C = 9673.238040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.141 4.141 4 C 0.080 3.920 5 H 0.081 0.919 6 C 0.514 3.486 7 O -0.555 6.555 8 N -0.704 5.704 9 C 0.151 3.849 10 H 0.074 0.926 11 C -0.076 4.076 12 C -0.104 4.104 13 C -0.118 4.118 14 C -0.123 4.123 15 C -0.127 4.127 16 C -0.110 4.110 17 C -0.114 4.114 18 C 0.209 3.791 19 H 0.063 0.937 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.079 0.921 23 C -0.070 4.070 24 N -0.968 5.968 25 Si 0.972 3.028 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.276 1.276 29 N -0.529 5.529 30 C 0.011 3.989 31 C 0.009 3.991 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.410 0.590 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.109 0.891 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.023 0.977 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.094 0.906 52 H 0.074 0.926 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 19.609 11.770 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.198 4.198 4 C -0.031 4.031 5 H 0.098 0.902 6 C 0.301 3.699 7 O -0.432 6.432 8 N -0.356 5.356 9 C 0.045 3.955 10 H 0.092 0.908 11 C -0.114 4.114 12 C -0.105 4.105 13 C -0.136 4.136 14 C -0.141 4.141 15 C -0.145 4.145 16 C -0.129 4.129 17 C -0.117 4.117 18 C 0.099 3.901 19 H 0.081 0.919 20 N -0.356 5.356 21 C -0.371 4.371 22 H 0.097 0.903 23 C -0.262 4.262 24 N -0.617 5.617 25 Si 0.800 3.200 26 H -0.203 1.203 27 H -0.224 1.224 28 H -0.202 1.202 29 N -0.255 5.255 30 C -0.136 4.136 31 C -0.138 4.138 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.128 0.872 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.041 0.959 49 H 0.100 0.900 50 H 0.083 0.917 51 H 0.112 0.888 52 H 0.093 0.907 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.444 19.431 11.673 23.859 hybrid contribution 0.807 -1.441 -0.805 1.837 sum 8.250 17.990 10.868 22.580 Atomic orbital electron populations 1.21663 0.94763 1.00494 1.02118 1.21047 0.96850 0.97658 0.94341 1.22062 1.01353 0.93695 1.02658 1.21890 0.98309 0.88766 0.94159 0.90172 1.20990 0.84452 0.88564 0.75934 1.90666 1.22367 1.81289 1.48869 1.45869 1.15470 1.05986 1.68259 1.21452 0.98558 0.80444 0.95094 0.90789 1.21263 0.93281 0.99389 0.97486 1.20613 0.95688 1.00145 0.94005 1.20835 0.94195 0.99901 0.98672 1.21293 0.95795 0.99848 0.97153 1.21300 1.00408 1.00042 0.92751 1.20771 0.93481 0.99156 0.99487 1.21513 0.94750 0.99703 0.95769 1.19902 0.89436 0.89041 0.91730 0.91950 1.42380 1.32623 1.36982 1.23648 1.19518 1.08849 1.11215 0.97493 0.90279 1.25550 0.98444 0.99621 1.02593 1.69824 1.22930 1.27350 1.41637 0.85246 0.77404 0.77508 0.79820 1.20270 1.22429 1.20171 1.61839 1.54444 1.05595 1.03582 1.22665 0.99930 0.97143 0.93911 1.22975 0.96659 0.91432 1.02705 0.92493 0.95600 0.91270 0.91250 0.91438 0.91841 0.90883 0.75413 0.90090 0.90942 0.84805 0.83214 0.83996 0.87243 0.79427 0.93998 0.95877 0.90030 0.91745 0.88764 0.90682 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.52 71.98 0.61 -2.56 16 2 C -0.08 -1.56 2.72 -10.79 -0.03 -1.59 16 3 C -0.14 -1.84 7.82 71.98 0.56 -1.28 16 4 C 0.08 1.68 1.92 44.17 0.08 1.76 16 5 H 0.08 1.33 7.43 -2.39 -0.02 1.31 16 6 C 0.51 14.56 5.33 87.66 0.47 15.02 16 7 O -0.55 -20.08 12.98 -3.04 -0.04 -20.12 16 8 N -0.70 -19.49 5.14 -438.22 -2.25 -21.74 16 9 C 0.15 5.28 2.94 45.90 0.13 5.41 16 10 H 0.07 3.10 7.64 -2.39 -0.02 3.08 16 11 C -0.08 -2.49 6.48 30.52 0.20 -2.29 16 12 C -0.10 -3.39 6.14 -19.59 -0.12 -3.51 16 13 C -0.12 -3.26 10.04 22.30 0.22 -3.04 16 14 C -0.12 -3.07 10.05 22.24 0.22 -2.85 16 15 C -0.13 -3.50 10.05 22.24 0.22 -3.28 16 16 C -0.11 -3.73 10.04 22.30 0.22 -3.50 16 17 C -0.11 -4.12 5.77 -19.60 -0.11 -4.23 16 18 C 0.21 8.18 3.11 44.91 0.14 8.32 16 19 H 0.06 2.40 7.99 -2.39 -0.02 2.38 16 20 N -0.72 -36.05 5.13 -323.33 -1.66 -37.71 16 21 C -0.24 -13.02 9.96 84.03 0.84 -12.19 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 25 Si 0.97 45.79 29.55 68.60 2.03 47.81 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 29 N -0.53 -10.66 3.62 -927.72 -3.36 -14.02 16 30 C 0.01 0.25 8.63 127.69 1.10 1.35 16 31 C 0.01 0.12 8.69 127.69 1.11 1.23 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.02 0.78 6.77 -2.39 -0.02 0.77 16 34 H 0.07 1.68 7.25 -2.39 -0.02 1.66 16 35 H 0.07 1.44 8.13 -2.38 -0.02 1.42 16 36 H 0.07 0.71 7.38 -2.39 -0.02 0.69 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.90 5.88 -2.39 -0.01 0.88 16 39 H 0.41 9.29 8.51 -92.71 -0.79 8.50 16 40 H 0.08 2.43 8.09 -2.39 -0.02 2.41 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 45 H 0.11 3.75 8.06 -2.91 -0.02 3.72 16 46 H 0.37 20.61 7.83 -92.71 -0.73 19.89 16 47 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 48 H 0.02 0.47 8.11 -2.39 -0.02 0.46 16 49 H 0.08 1.47 7.81 -2.39 -0.02 1.45 16 50 H 0.06 1.84 5.63 -2.38 -0.01 1.83 16 51 H 0.09 1.06 4.69 -2.38 -0.01 1.05 16 52 H 0.07 0.88 7.76 -2.38 -0.02 0.86 16 53 H 0.04 0.42 7.75 -2.39 -0.02 0.41 16 Total: -1.00 -69.24 411.93 0.75 -68.49 By element: Atomic # 1 Polarization: 47.76 SS G_CDS: -0.60 Total: 47.16 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 6.35 Total: -10.72 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -6.99 Total: -132.63 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.04 Total: -20.12 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -69.24 0.75 -68.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281913280.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.831 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds