Wall clock time and date at job start Wed Apr 1 2020 03:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46875 * 2 1 4 4 C 1.52996 * 109.47520 * 119.99671 * 2 1 3 5 5 H 1.09007 * 109.46606 * 60.00100 * 4 2 1 6 6 C 1.52999 * 109.47155 * 179.97438 * 4 2 1 7 7 C 1.53007 * 109.46732 * 185.00090 * 6 4 2 8 8 N 1.46498 * 109.46586 * 179.97438 * 7 6 4 9 9 C 1.46499 * 120.00504 * 269.99878 * 8 7 6 10 10 C 1.34777 * 119.99943 * 90.00331 * 8 7 6 11 11 O 1.21291 * 119.99811 * 354.20378 * 10 8 7 12 12 C 1.50700 * 120.00189 * 174.20242 * 10 8 7 13 13 C 1.50704 * 115.54813 * 292.32917 * 12 10 8 14 14 C 1.38664 * 120.42193 * 304.46595 * 13 12 10 15 15 C 1.38626 * 118.42230 * 180.02562 * 14 13 12 16 16 C 1.38225 * 119.15962 * 359.97438 * 15 14 13 17 17 N 1.31854 * 120.76422 * 359.97438 * 16 15 14 18 18 C 1.31882 * 121.72396 * 359.71108 * 17 16 15 19 19 C 1.52998 * 117.49861 * 146.66468 * 12 10 8 20 20 C 1.52995 * 117.49960 * 78.00450 * 12 10 8 21 21 N 1.46502 * 109.47265 * 300.00382 * 4 2 1 22 22 C 1.36938 * 119.99968 * 84.99786 * 21 4 2 23 23 H 1.07995 * 120.00509 * 359.97438 * 22 21 4 24 24 C 1.38817 * 119.99586 * 179.97438 * 22 21 4 25 25 N 1.31612 * 120.00299 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99728 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47173 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46638 * 120.00080 * 26 24 22 29 29 H 1.48494 * 109.47129 * 240.00171 * 26 24 22 30 30 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46983 * 300.00069 * 1 2 3 32 32 H 1.09000 * 109.47768 * 60.00081 * 1 2 3 33 33 H 1.09001 * 109.46983 * 239.99931 * 2 1 3 34 34 H 1.08997 * 109.47109 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46939 * 299.99936 * 3 2 1 36 36 H 1.08996 * 109.46944 * 60.00082 * 3 2 1 37 37 H 1.08995 * 109.47144 * 305.00246 * 6 4 2 38 38 H 1.08995 * 109.47050 * 65.00682 * 6 4 2 39 39 H 1.08995 * 109.47434 * 299.99978 * 7 6 4 40 40 H 1.09005 * 109.46769 * 60.00544 * 7 6 4 41 41 H 1.09001 * 109.46890 * 95.54850 * 9 8 7 42 42 H 1.09000 * 109.47623 * 215.55298 * 9 8 7 43 43 H 1.08999 * 109.47159 * 335.55725 * 9 8 7 44 44 H 1.08002 * 120.79177 * 0.02562 * 14 13 12 45 45 H 1.08003 * 120.42159 * 180.02562 * 15 14 13 46 46 H 1.08007 * 119.61665 * 179.97438 * 16 15 14 47 47 H 1.08007 * 119.61479 * 180.31223 * 18 17 16 48 48 H 1.09005 * 117.49755 * 359.97438 * 19 12 10 49 49 H 1.09003 * 117.50345 * 145.02153 * 19 12 10 50 50 H 1.08996 * 117.49884 * 214.97834 * 20 12 10 51 51 H 1.08998 * 117.49823 * 359.97438 * 20 12 10 52 52 H 0.97001 * 119.99602 * 264.99887 * 21 4 2 53 53 H 0.97000 * 120.00102 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5701 -0.7216 1.2488 7 6 4.0800 -1.5490 2.4305 8 7 5.5450 -1.5500 2.4298 9 6 6.2766 -2.5900 1.7021 10 6 6.2199 -0.5941 3.0986 11 8 5.6189 0.3255 3.6127 12 6 7.7211 -0.6679 3.2078 13 6 8.2571 -1.8027 4.0421 14 6 7.8447 -1.9638 5.3562 15 6 8.3646 -3.0216 6.0859 16 6 9.2700 -3.8748 5.4835 17 7 9.6388 -3.6917 4.2309 18 6 9.1603 -2.7001 3.5050 19 6 8.4934 0.6526 3.2317 20 6 8.5400 -0.2393 1.9886 21 7 1.5517 -0.0306 2.4454 22 6 0.3102 -0.3210 2.9448 23 1 -0.3092 -1.0589 2.4567 24 6 -0.1522 0.3330 4.0786 25 7 0.6027 1.2318 4.6738 26 14 -1.8462 -0.0627 4.7594 27 1 -2.4892 -1.1009 3.9145 28 1 -1.7151 -0.5680 6.1497 29 1 -2.6805 1.1657 4.7558 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.9330 -1.1562 0.3175 38 1 3.9338 0.3019 1.3382 39 1 3.7171 -1.1145 3.3619 40 1 3.7163 -2.5727 2.3411 41 1 6.5440 -2.2208 0.7120 42 1 7.1824 -2.8484 2.2505 43 1 5.6474 -3.4745 1.6022 44 1 7.1353 -1.2814 5.8007 45 1 8.0655 -3.1775 7.1119 46 1 9.6801 -4.7011 6.0454 47 1 9.4822 -2.5849 2.4805 48 1 7.9157 1.5747 3.1681 49 1 9.3895 0.7005 3.8506 50 1 9.4666 -0.7778 1.7901 51 1 7.9929 0.0957 1.1074 52 1 2.1079 0.6325 2.8836 53 1 0.2794 1.6891 5.4658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282563855.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:40 Heat of formation + Delta-G solvation = 16.780415 kcal Electronic energy + Delta-G solvation = -31417.311788 eV Core-core repulsion = 27482.337234 eV Total energy + Delta-G solvation = -3934.974554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.95492 -40.59024 -39.04732 -37.66914 -36.67834 -34.73890 -33.39611 -32.85412 -31.90956 -31.27852 -28.15277 -27.75246 -27.32513 -25.69305 -24.91653 -24.77928 -23.51196 -23.08627 -22.19452 -20.20090 -19.82374 -19.16105 -18.55478 -17.79052 -17.30564 -17.08516 -16.76426 -16.48113 -16.13962 -15.83511 -15.51496 -15.35890 -15.10503 -14.98933 -14.80260 -14.51931 -14.12377 -14.03189 -14.01914 -13.82775 -13.78900 -13.20336 -12.98624 -12.96240 -12.93122 -12.77132 -12.74312 -12.43418 -12.37402 -12.13205 -12.00943 -11.91792 -11.80319 -11.66734 -11.63280 -11.28051 -11.16206 -11.01978 -10.82990 -10.71945 -10.35723 -9.88105 -9.63482 -8.86657 -7.83837 -5.09435 0.04899 0.23332 1.45683 1.45879 1.51432 1.55267 1.95898 2.56812 2.60310 2.85844 3.32474 3.45442 3.48618 3.63731 3.81191 3.84255 3.93380 3.94278 4.00522 4.03556 4.17781 4.26484 4.29840 4.30809 4.41079 4.45915 4.47492 4.63789 4.64257 4.68360 4.70486 4.79072 4.84770 4.87546 4.89607 4.90755 4.93985 5.04511 5.11909 5.14379 5.16942 5.24071 5.26818 5.27788 5.40083 5.45672 5.58534 5.58899 5.65266 5.68507 5.84662 6.36272 6.40314 6.94847 7.17349 7.42408 8.21553 8.43825 9.39902 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.002979 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.124715 B = 9397.114553 C =10447.269529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.130 4.130 4 C 0.177 3.823 5 H 0.048 0.952 6 C -0.117 4.117 7 C 0.127 3.873 8 N -0.604 5.604 9 C 0.071 3.929 10 C 0.540 3.460 11 O -0.579 6.579 12 C -0.128 4.128 13 C -0.094 4.094 14 C -0.085 4.085 15 C -0.166 4.166 16 C 0.095 3.905 17 N -0.495 5.495 18 C 0.109 3.891 19 C -0.144 4.144 20 C -0.123 4.123 21 N -0.725 5.725 22 C -0.206 4.206 23 H 0.079 0.921 24 C -0.083 4.083 25 N -0.972 5.972 26 Si 0.957 3.043 27 H -0.263 1.263 28 H -0.302 1.302 29 H -0.301 1.301 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.025 0.975 37 H 0.092 0.908 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.154 0.846 46 H 0.184 0.816 47 H 0.185 0.815 48 H 0.086 0.914 49 H 0.118 0.882 50 H 0.142 0.858 51 H 0.107 0.893 52 H 0.368 0.632 53 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.602 -11.264 -8.458 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.187 4.187 4 C 0.068 3.932 5 H 0.066 0.934 6 C -0.156 4.156 7 C 0.004 3.996 8 N -0.335 5.335 9 C -0.071 4.071 10 C 0.328 3.672 11 O -0.458 6.458 12 C -0.132 4.132 13 C -0.096 4.096 14 C -0.111 4.111 15 C -0.186 4.186 16 C -0.062 4.062 17 N -0.204 5.204 18 C -0.048 4.048 19 C -0.182 4.182 20 C -0.160 4.160 21 N -0.364 5.364 22 C -0.338 4.338 23 H 0.097 0.903 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.789 3.211 27 H -0.187 1.187 28 H -0.230 1.230 29 H -0.229 1.229 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.130 0.870 45 H 0.172 0.828 46 H 0.201 0.799 47 H 0.201 0.799 48 H 0.104 0.896 49 H 0.137 0.863 50 H 0.160 0.840 51 H 0.126 0.874 52 H 0.200 0.800 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.709 -11.521 -8.568 26.027 hybrid contribution -2.075 1.362 1.790 3.060 sum 19.634 -10.159 -6.778 23.122 Atomic orbital electron populations 1.21772 0.96108 1.00751 1.00892 1.21630 0.95818 0.96407 0.98632 1.21650 0.99978 0.96949 1.00172 1.20473 0.91574 0.94655 0.86482 0.93363 1.22010 0.95576 0.99607 0.98435 1.21356 0.78421 1.00699 0.99116 1.47905 1.06508 1.28411 1.50721 1.22156 0.97481 0.90319 0.97098 1.20000 0.88684 0.81166 0.77310 1.90791 1.70758 1.35318 1.48917 1.19806 0.89244 0.98273 1.05878 1.19712 0.99467 0.96542 0.93892 1.21591 0.97753 0.97471 0.94260 1.22386 0.98517 0.95240 1.02445 1.23260 0.93481 0.98379 0.91035 1.67825 1.24694 1.20141 1.07709 1.22978 0.92325 0.88806 1.00655 1.23102 1.00997 0.92191 1.01866 1.23342 1.01204 1.00645 0.90787 1.42626 1.16866 1.47319 1.29599 1.19569 0.93250 1.15738 1.05271 0.90307 1.25415 1.01475 1.00586 0.99946 1.69872 1.38355 1.31415 1.22831 0.85277 0.81025 0.77041 0.77797 1.18680 1.22953 1.22877 0.93555 0.93559 0.93153 0.90089 0.93111 0.92673 0.95589 0.88990 0.93894 0.93871 0.89354 0.90125 0.90425 0.89788 0.87049 0.82812 0.79857 0.79864 0.89560 0.86345 0.84020 0.87414 0.80043 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 8.26 71.98 0.59 -4.40 16 2 C -0.10 -3.52 2.80 -10.79 -0.03 -3.55 16 3 C -0.13 -4.60 8.68 71.98 0.63 -3.98 16 4 C 0.18 6.71 2.19 44.99 0.10 6.81 16 5 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 6 C -0.12 -3.82 4.58 30.60 0.14 -3.68 16 7 C 0.13 4.26 5.29 86.38 0.46 4.72 16 8 N -0.60 -16.64 2.87 -846.74 -2.43 -19.07 16 9 C 0.07 1.20 10.06 127.77 1.28 2.49 16 10 C 0.54 17.21 6.67 87.66 0.58 17.79 16 11 O -0.58 -25.63 16.40 -3.06 -0.05 -25.68 16 12 C -0.13 -2.81 1.17 -53.68 -0.06 -2.87 16 13 C -0.09 -1.88 4.20 -19.77 -0.08 -1.96 16 14 C -0.08 -1.93 9.64 22.46 0.22 -1.71 16 15 C -0.17 -2.92 10.11 22.36 0.23 -2.70 16 16 C 0.09 1.48 11.18 84.69 0.95 2.43 16 17 N -0.50 -8.83 10.36 -195.84 -2.03 -10.86 16 18 C 0.11 1.74 8.93 84.67 0.76 2.49 16 19 C -0.14 -2.89 9.77 30.62 0.30 -2.59 16 20 C -0.12 -1.72 9.23 30.62 0.28 -1.44 16 21 N -0.72 -36.22 3.69 -322.94 -1.19 -37.41 16 22 C -0.21 -11.23 7.57 84.03 0.64 -10.60 16 23 H 0.08 4.10 7.39 -2.91 -0.02 4.08 16 24 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 25 N -0.97 -62.56 13.06 21.65 0.28 -62.28 16 26 Si 0.96 47.64 29.55 68.60 2.03 49.66 16 27 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 29 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 2.06 6.01 -2.39 -0.01 2.05 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.68 6.55 -2.39 -0.02 1.66 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.02 1.12 7.60 -2.39 -0.02 1.10 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 38 H 0.04 1.63 6.71 -2.39 -0.02 1.62 16 39 H 0.04 1.95 7.12 -2.39 -0.02 1.93 16 40 H 0.09 2.59 7.86 -2.38 -0.02 2.57 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.19 4.38 -2.39 -0.01 1.18 16 43 H 0.08 1.24 7.83 -2.39 -0.02 1.22 16 44 H 0.11 3.05 8.06 -2.91 -0.02 3.02 16 45 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 46 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 47 H 0.18 1.76 6.51 -2.91 -0.02 1.74 16 48 H 0.09 2.15 8.04 -2.38 -0.02 2.14 16 49 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.14 1.00 6.66 -2.39 -0.02 0.98 16 51 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.37 21.18 7.80 -92.71 -0.72 20.46 16 53 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -77.80 419.24 4.22 -73.58 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: 0.18 Total: 39.22 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 7.44 Total: -7.16 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -5.37 Total: -129.62 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -77.80 4.22 -73.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282563855.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.357 kcal (2) G-P(sol) polarization free energy of solvation -77.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds