Wall clock time and date at job start Wed Apr 1 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21601 * 119.99523 * 359.97438 * 18 17 5 20 20 C 1.47518 * 120.00171 * 179.97438 * 18 17 5 21 21 C 1.39815 * 120.21461 * 359.97438 * 20 18 17 22 22 C 1.37390 * 120.12554 * 180.12020 * 21 20 18 23 23 C 1.39769 * 120.39163 * 359.95363 * 22 21 20 24 24 C 1.39301 * 119.29472 * 359.84837 * 23 22 21 25 25 C 1.37428 * 120.65377 * 0.02562 * 24 23 22 26 26 C 1.51615 * 107.87842 * 180.43406 * 24 23 22 27 27 C 1.54604 * 102.72826 * 16.03308 * 26 24 23 28 28 N 1.39457 * 129.73912 * 179.53394 * 23 22 21 29 29 C 1.46896 * 111.00120 * 283.82446 * 28 23 22 30 30 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 31 31 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 32 32 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 34 34 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 36 36 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 38 38 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.07998 * 119.93769 * 0.14492 * 21 20 18 45 45 H 1.07996 * 119.80279 * 179.97438 * 22 21 20 46 46 H 1.07997 * 120.02019 * 180.02562 * 25 24 23 47 47 H 1.09006 * 110.76087 * 257.72178 * 26 24 23 48 48 H 1.08996 * 110.92240 * 134.41694 * 26 24 23 49 49 H 1.08997 * 110.77507 * 216.14417 * 27 26 24 50 50 H 1.08994 * 110.77649 * 92.71579 * 27 26 24 51 51 H 1.09000 * 109.47005 * 59.87971 * 29 28 23 52 52 H 1.09003 * 109.47374 * 179.87390 * 29 28 23 53 53 H 1.08997 * 109.47618 * 299.88337 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.4799 4.8767 0.3129 15 1 10.2179 6.7901 -1.1531 16 1 10.0107 7.0650 1.2474 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6985 4.0740 -0.4335 20 6 2.0861 4.7655 -2.6291 21 6 2.9763 4.8054 -3.7064 22 6 2.6125 5.4221 -4.8790 23 6 1.3522 6.0128 -5.0058 24 6 0.4668 5.9671 -3.9314 25 6 0.8224 5.3499 -2.7562 26 6 -0.8105 6.6683 -4.3506 27 6 -0.6754 6.7307 -5.8895 28 7 0.7895 6.6894 -6.0877 29 6 1.3430 8.0449 -6.2066 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0970 41 1 5.4810 4.9908 -0.1315 42 1 7.4035 7.7129 -0.2771 43 1 4.3127 3.5646 -1.9981 44 1 3.9516 4.3503 -3.6169 45 1 3.3044 5.4502 -5.7078 46 1 0.1278 5.3201 -1.9298 47 1 -0.8580 7.6711 -3.9259 48 1 -1.6862 6.0866 -4.0629 49 1 -1.0919 7.6605 -6.2767 50 1 -1.1530 5.8685 -6.3548 51 1 2.4216 7.9854 -6.3521 52 1 0.8887 8.5494 -7.0594 53 1 1.1295 8.6057 -5.2966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282653242.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:03 Heat of formation + Delta-G solvation = -17.643117 kcal Electronic energy + Delta-G solvation = -30731.795278 eV Core-core repulsion = 26795.328008 eV Total energy + Delta-G solvation = -3936.467270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.96672 -40.92827 -38.19254 -37.31923 -36.25114 -35.13829 -33.52391 -33.03481 -31.94777 -30.88284 -29.91104 -28.67990 -27.02284 -25.90367 -24.67800 -23.76421 -23.38448 -22.08468 -21.85986 -21.79248 -21.06375 -19.28194 -18.46030 -17.74729 -17.44104 -16.91357 -16.66346 -16.37904 -16.30661 -15.85385 -15.59673 -15.25702 -15.16846 -15.03737 -14.69443 -14.46755 -14.25845 -14.19036 -14.01782 -13.87806 -13.74589 -13.50816 -13.30255 -13.16059 -13.00692 -12.85540 -12.83106 -12.75972 -12.50063 -12.14128 -12.06973 -12.00724 -11.91159 -11.85196 -11.83967 -11.40873 -11.36059 -11.01431 -10.87696 -10.51550 -9.94810 -9.92723 -9.00856 -8.97978 -7.93706 -5.23541 -0.24435 0.31778 1.48221 1.48991 1.58879 1.80758 2.21158 2.56236 2.61276 2.80411 3.40651 3.50997 3.61157 3.75953 3.79640 3.98208 4.00853 4.05772 4.08364 4.17711 4.23999 4.25820 4.32159 4.35585 4.44360 4.48995 4.55799 4.56408 4.61279 4.72177 4.77680 4.84698 4.91479 4.91795 4.94327 4.95964 4.99596 5.05040 5.09607 5.14472 5.17155 5.22870 5.27627 5.32006 5.33665 5.41963 5.51528 5.54115 5.58309 5.65107 5.85860 6.13795 6.26587 6.58996 7.25914 7.34017 8.07420 8.31290 9.29386 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006718 B = 0.003722 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4167.035079 B = 7520.571696 C =11113.791630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.117 4.117 5 C 0.147 3.853 6 H 0.059 0.941 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.242 4.242 10 H 0.080 0.920 11 C -0.073 4.073 12 N -0.968 5.968 13 Si 0.972 3.028 14 H -0.264 1.264 15 H -0.293 1.293 16 H -0.298 1.298 17 N -0.701 5.701 18 C 0.559 3.441 19 O -0.571 6.571 20 C -0.161 4.161 21 C -0.065 4.065 22 C -0.124 4.124 23 C 0.109 3.891 24 C -0.161 4.161 25 C -0.040 4.040 26 C -0.106 4.106 27 C 0.050 3.950 28 N -0.506 5.506 29 C 0.025 3.975 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.406 0.594 44 H 0.140 0.860 45 H 0.145 0.855 46 H 0.126 0.874 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.112 0.888 50 H 0.097 0.903 51 H 0.069 0.931 52 H 0.101 0.899 53 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.790 -6.156 -12.471 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.156 4.156 5 C 0.043 3.957 6 H 0.077 0.923 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.374 4.374 10 H 0.098 0.902 11 C -0.265 4.265 12 N -0.619 5.619 13 Si 0.801 3.199 14 H -0.188 1.188 15 H -0.220 1.220 16 H -0.226 1.226 17 N -0.351 5.351 18 C 0.348 3.652 19 O -0.452 6.452 20 C -0.165 4.165 21 C -0.084 4.084 22 C -0.144 4.144 23 C 0.012 3.988 24 C -0.163 4.163 25 C -0.060 4.060 26 C -0.144 4.144 27 C -0.076 4.076 28 N -0.223 5.223 29 C -0.120 4.120 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.243 0.757 44 H 0.158 0.842 45 H 0.163 0.837 46 H 0.144 0.856 47 H 0.107 0.893 48 H 0.119 0.881 49 H 0.131 0.869 50 H 0.115 0.885 51 H 0.088 0.912 52 H 0.119 0.881 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.017 -6.474 -12.308 21.977 hybrid contribution 1.072 1.275 0.788 1.843 sum -15.944 -5.199 -11.520 20.346 Atomic orbital electron populations 1.21734 0.95865 1.01825 1.01200 1.21541 0.96011 0.95941 1.02323 1.21545 0.94751 0.96666 1.01285 1.21916 0.95958 0.94102 1.03590 1.21156 0.94234 0.94144 0.86207 0.92297 1.21121 0.90775 0.86893 0.99358 1.42551 1.04585 1.03789 1.87724 1.19672 0.84989 0.92660 1.40051 0.90240 1.25539 1.01739 0.95681 1.03568 1.69850 1.34591 0.99007 1.58420 0.85094 0.80411 0.77833 0.76521 1.18846 1.22038 1.22559 1.45822 1.15709 1.56667 1.16938 1.18293 0.81776 0.77642 0.87466 1.90726 1.52393 1.60905 1.41191 1.19834 0.96553 1.05579 0.94533 1.21230 0.98694 0.96758 0.91734 1.20590 0.95650 0.99634 0.98487 1.19953 0.94020 0.95399 0.89435 1.21217 0.99511 1.02196 0.93414 1.20432 0.94711 0.94037 0.96806 1.21761 0.94661 1.00789 0.97178 1.23352 0.85518 1.05062 0.93631 1.59985 1.06524 1.16945 1.38826 1.22574 1.01259 0.86243 1.01969 0.93450 0.93728 0.91423 0.91598 0.91330 0.93793 0.93534 0.90399 0.89646 0.94069 0.94371 0.79451 0.94201 0.75748 0.84240 0.83682 0.85649 0.89334 0.88064 0.86927 0.88460 0.91224 0.88069 0.94999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.91 71.98 0.71 -2.39 16 2 C -0.12 -2.64 5.93 30.59 0.18 -2.46 16 3 C -0.10 -2.93 3.81 30.60 0.12 -2.81 16 4 C -0.12 -3.13 4.89 30.60 0.15 -2.98 16 5 C 0.15 5.01 2.41 44.99 0.11 5.12 16 6 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 7 C 0.15 5.53 5.82 86.38 0.50 6.03 16 8 N -0.74 -36.91 5.43 -343.46 -1.87 -38.78 16 9 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 10 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 11 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 12 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 13 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 17 N -0.70 -23.47 4.42 -445.71 -1.97 -25.44 16 18 C 0.56 19.93 6.33 86.69 0.55 20.48 16 19 O -0.57 -23.10 13.48 -4.03 -0.05 -23.15 16 20 C -0.16 -5.10 5.88 -20.07 -0.12 -5.22 16 21 C -0.06 -1.80 9.52 22.45 0.21 -1.59 16 22 C -0.12 -3.10 10.05 22.44 0.23 -2.87 16 23 C 0.11 2.63 5.57 38.55 0.21 2.84 16 24 C -0.16 -3.95 6.21 -19.51 -0.12 -4.07 16 25 C -0.04 -1.18 9.58 22.46 0.22 -0.97 16 26 C -0.11 -1.76 6.98 30.69 0.21 -1.55 16 27 C 0.05 0.69 7.00 86.66 0.61 1.30 16 28 N -0.51 -9.64 5.31 -713.38 -3.79 -13.43 16 29 C 0.02 0.39 9.28 127.69 1.18 1.58 16 30 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 36 H 0.05 1.47 5.64 -2.39 -0.01 1.46 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.37 20.33 7.33 -92.71 -0.68 19.65 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.41 12.84 6.63 -92.70 -0.61 12.22 16 44 H 0.14 3.58 6.40 -2.91 -0.02 3.56 16 45 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.13 3.76 7.65 -2.91 -0.02 3.74 16 47 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.11 0.96 7.76 -2.39 -0.02 0.94 16 50 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.10 1.08 8.10 -2.39 -0.02 1.06 16 53 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -69.78 420.38 0.50 -69.28 By element: Atomic # 1 Polarization: 48.68 SS G_CDS: -0.39 Total: 48.29 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 6.26 Total: -5.57 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -7.34 Total: -136.54 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -69.78 0.50 -69.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282653242.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.636 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds