Wall clock time and date at job start Wed Apr 1 2020 04:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47554 * 2 1 4 4 N 1.46500 * 109.46778 * 119.99981 * 2 1 3 5 5 C 1.46493 * 120.00145 * 294.16160 * 4 2 1 6 6 C 1.52994 * 109.47458 * 270.00194 * 5 4 2 7 7 N 1.46501 * 109.47370 * 179.97438 * 6 5 4 8 8 C 1.46504 * 119.99659 * 90.00415 * 7 6 5 9 9 C 1.36936 * 120.00045 * 269.99987 * 7 6 5 10 10 H 1.07999 * 119.99602 * 143.23955 * 9 7 6 11 11 C 1.38809 * 120.00075 * 323.24035 * 9 7 6 12 12 N 1.31621 * 119.99873 * 155.76846 * 11 9 7 13 13 Si 1.86800 * 120.00254 * 335.76925 * 11 9 7 14 14 H 1.48490 * 109.47241 * 94.86156 * 13 11 9 15 15 H 1.48497 * 109.47016 * 214.86652 * 13 11 9 16 16 H 1.48503 * 109.46786 * 334.86143 * 13 11 9 17 17 C 1.34782 * 119.99859 * 114.16536 * 4 2 1 18 18 O 1.21282 * 119.99976 * 185.00025 * 17 4 2 19 19 C 1.50704 * 119.99951 * 5.00110 * 17 4 2 20 20 N 1.46901 * 109.47063 * 175.14715 * 19 17 4 21 21 C 1.47902 * 110.99949 * 163.12689 * 20 19 17 22 22 C 1.54605 * 102.62772 * 94.66320 * 21 20 19 23 23 C 1.51571 * 102.81751 * 25.60524 * 22 21 20 24 24 C 1.37923 * 131.57212 * 163.76866 * 23 22 21 25 25 C 1.38299 * 120.07987 * 180.32645 * 24 23 22 26 26 C 1.38308 * 119.88737 * 359.97438 * 25 24 23 27 27 C 1.37909 * 120.26216 * 359.87951 * 26 25 24 28 28 C 1.38974 * 107.94615 * 343.81128 * 23 22 21 29 29 H 1.09002 * 109.46663 * 305.71809 * 1 2 3 30 30 H 1.08999 * 109.46853 * 65.71125 * 1 2 3 31 31 H 1.08991 * 109.47597 * 185.71620 * 1 2 3 32 32 H 1.09000 * 109.46802 * 239.99771 * 2 1 3 33 33 H 1.08993 * 109.47278 * 174.78041 * 3 2 1 34 34 H 1.09008 * 109.47017 * 294.78065 * 3 2 1 35 35 H 1.09000 * 109.47221 * 54.77527 * 3 2 1 36 36 H 1.09002 * 109.47040 * 30.00338 * 5 4 2 37 37 H 1.09002 * 109.47051 * 150.00310 * 5 4 2 38 38 H 1.09002 * 109.47112 * 300.00100 * 6 5 4 39 39 H 1.09002 * 109.46895 * 60.00020 * 6 5 4 40 40 H 1.08996 * 109.47519 * 95.05384 * 8 7 6 41 41 H 1.09005 * 109.46540 * 215.04695 * 8 7 6 42 42 H 1.08999 * 109.46890 * 335.04651 * 8 7 6 43 43 H 0.97003 * 120.00171 * 180.02562 * 12 11 9 44 44 H 1.09007 * 109.46969 * 55.15087 * 19 17 4 45 45 H 1.08995 * 109.47121 * 295.14844 * 19 17 4 46 46 H 1.09007 * 110.77483 * 212.94454 * 21 20 19 47 47 H 1.08999 * 110.77791 * 336.18371 * 21 20 19 48 48 H 1.09001 * 110.74112 * 143.94214 * 22 21 20 49 49 H 1.09004 * 110.73919 * 267.27356 * 22 21 20 50 50 H 1.07997 * 119.95489 * 0.29513 * 24 23 22 51 51 H 1.08003 * 120.05523 * 179.97438 * 25 24 23 52 52 H 1.07994 * 119.86945 * 179.89166 * 26 25 24 53 53 H 1.08000 * 119.89877 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7728 -0.1200 2.5229 6 6 2.9281 0.8093 2.9002 7 7 2.6823 1.3804 4.2267 8 6 3.1704 0.6901 5.4232 9 6 1.9966 2.5594 4.3482 10 1 1.3161 2.7056 5.1741 11 6 2.1760 3.5666 3.4100 12 7 1.2332 4.4654 3.2210 13 14 3.7554 3.6464 2.4158 14 1 3.5581 2.9543 1.1169 15 1 4.1148 5.0662 2.1707 16 1 4.8489 2.9820 3.1696 17 6 2.6934 -1.8510 1.0760 18 8 3.0185 -2.4689 2.0677 19 6 3.0443 -2.3805 -0.2906 20 7 3.8724 -3.5858 -0.1509 21 6 3.9037 -4.3566 -1.4128 22 6 5.1913 -3.8381 -2.0937 23 6 6.0286 -3.3724 -0.9192 24 6 7.3727 -3.0826 -0.8112 25 6 7.8987 -2.6751 0.4012 26 6 7.0745 -2.5580 1.5056 27 6 5.7292 -2.8436 1.4023 28 6 5.1909 -3.2529 0.1833 29 1 -0.3633 0.6000 0.8344 30 1 -0.3633 0.4227 -0.9367 31 1 -0.3634 -1.0224 0.1023 32 1 1.8933 -0.5139 -0.8900 33 1 3.1260 1.4438 0.0935 34 1 1.7551 1.9286 -0.9331 35 1 1.6024 1.9826 0.8395 36 1 0.8413 0.4458 2.5084 37 1 1.6986 -0.9234 3.2559 38 1 3.8597 0.2435 2.9147 39 1 3.0024 1.6127 2.1672 40 1 4.1370 1.1026 5.7120 41 1 2.4589 0.8276 6.2375 42 1 3.2781 -0.3735 5.2105 43 1 1.3584 5.1690 2.5651 44 1 3.5980 -1.6214 -0.8432 45 1 2.1302 -2.6282 -0.8300 46 1 3.9763 -5.4254 -1.2114 47 1 3.0261 -4.1381 -2.0212 48 1 5.6939 -4.6418 -2.6317 49 1 4.9667 -3.0064 -2.7616 50 1 8.0152 -3.1746 -1.6744 51 1 8.9514 -2.4486 0.4854 52 1 7.4858 -2.2414 2.4526 53 1 5.0909 -2.7498 2.2684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284558560.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:57 Heat of formation + Delta-G solvation = 30.699235 kcal Electronic energy + Delta-G solvation = -32533.485775 eV Core-core repulsion = 28599.114786 eV Total energy + Delta-G solvation = -3934.370988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.04058 -40.75564 -38.29945 -37.59032 -37.20641 -33.92513 -33.34258 -32.75494 -31.51563 -30.33237 -29.78215 -28.30707 -28.08006 -27.47349 -24.88508 -23.99186 -23.04962 -22.67296 -22.15812 -21.91997 -19.91444 -18.82585 -18.59192 -17.84574 -17.18551 -17.04146 -16.67960 -16.47399 -16.17146 -16.08586 -15.72015 -15.24509 -15.01763 -14.89810 -14.76347 -14.73115 -14.43469 -14.14797 -14.07853 -13.87730 -13.59086 -13.53677 -13.51561 -13.31381 -13.11459 -13.08665 -12.79998 -12.72533 -12.44946 -12.41826 -12.36823 -12.17480 -12.07767 -11.92783 -11.75580 -11.74526 -11.43850 -10.80895 -10.62366 -10.32192 -9.77305 -9.72728 -8.87246 -8.80237 -8.23596 -5.60427 0.33774 0.44939 1.24038 1.38074 1.48310 1.62304 1.88012 2.38276 2.64777 2.82645 3.03195 3.41222 3.49916 3.63967 3.81218 3.85999 4.03368 4.08177 4.08729 4.14326 4.18678 4.20584 4.26502 4.29017 4.43601 4.51951 4.55324 4.57105 4.60388 4.66739 4.72496 4.74433 4.77311 4.81829 4.88619 4.92360 4.93728 4.96240 4.99978 5.06256 5.10210 5.19057 5.32119 5.35637 5.44541 5.51402 5.54492 5.61290 5.80111 5.89449 5.92746 6.12080 6.29666 6.51360 6.91696 7.24756 7.56932 8.01605 8.95493 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003967 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.203714 B = 7057.333392 C = 7803.925932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 C -0.171 4.171 4 N -0.605 5.605 5 C 0.119 3.881 6 C 0.128 3.872 7 N -0.623 5.623 8 C 0.124 3.876 9 C -0.272 4.272 10 H 0.045 0.955 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.911 3.089 14 H -0.229 1.229 15 H -0.309 1.309 16 H -0.288 1.288 17 C 0.504 3.496 18 O -0.559 6.559 19 C 0.047 3.953 20 N -0.499 5.499 21 C 0.051 3.949 22 C -0.101 4.101 23 C -0.148 4.148 24 C -0.098 4.098 25 C -0.132 4.132 26 C -0.125 4.125 27 C -0.130 4.130 28 C 0.072 3.928 29 H 0.037 0.963 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.012 0.988 41 H 0.042 0.958 42 H 0.049 0.951 43 H 0.265 0.735 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.092 0.908 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.148 0.852 51 H 0.148 0.852 52 H 0.127 0.873 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 -17.194 -18.871 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 C -0.228 4.228 4 N -0.339 5.339 5 C -0.007 4.007 6 C 0.002 3.998 7 N -0.349 5.349 8 C -0.020 4.020 9 C -0.401 4.401 10 H 0.062 0.938 11 C -0.195 4.195 12 N -0.577 5.577 13 Si 0.740 3.260 14 H -0.154 1.154 15 H -0.238 1.238 16 H -0.214 1.214 17 C 0.292 3.708 18 O -0.437 6.437 19 C -0.082 4.082 20 N -0.217 5.217 21 C -0.075 4.075 22 C -0.139 4.139 23 C -0.151 4.151 24 C -0.116 4.116 25 C -0.151 4.151 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.023 4.023 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.160 0.840 46 H 0.111 0.889 47 H 0.135 0.865 48 H 0.125 0.875 49 H 0.115 0.885 50 H 0.166 0.834 51 H 0.165 0.835 52 H 0.145 0.855 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.948 -17.704 -18.013 26.195 hybrid contribution 0.842 1.264 0.279 1.544 sum 7.790 -16.439 -17.734 25.405 Atomic orbital electron populations 1.22144 0.93711 1.02560 1.03186 1.21449 0.95512 0.92970 0.87317 1.22497 1.00574 0.96591 1.03174 1.48292 1.55594 1.22532 1.07498 1.21699 0.99353 0.96044 0.83570 1.21611 0.95421 0.95401 0.87334 1.44134 1.65643 1.23303 1.01779 1.21146 0.96675 0.95178 0.89035 1.18683 1.17690 0.91578 1.12168 0.93776 1.25817 0.98932 0.95258 0.99540 1.69993 1.32950 1.18362 1.36360 0.86482 0.82676 0.75523 0.81309 1.15391 1.23791 1.21437 1.21143 0.77245 0.79955 0.92412 1.90613 1.53753 1.58427 1.40929 1.22227 1.00204 0.92256 0.93483 1.59651 1.08413 1.19808 1.33860 1.23384 0.98934 0.98684 0.86483 1.21749 0.94648 1.02418 0.95104 1.21438 0.95236 1.02572 0.95822 1.20727 0.93652 0.98805 0.98432 1.21380 1.00733 1.00471 0.92485 1.21188 0.92920 1.00214 1.00048 1.20988 0.95697 1.01332 0.96967 1.19596 0.89818 0.98991 0.93939 0.94383 0.88720 0.91449 0.85854 0.93421 0.88876 0.94159 0.91446 0.92323 0.95181 0.92110 0.97023 0.93938 0.93190 0.92547 0.90225 0.83963 0.88947 0.86515 0.87517 0.88474 0.83421 0.83472 0.85489 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.18 71.98 0.66 -2.85 16 2 C 0.13 3.16 3.16 44.99 0.14 3.30 16 3 C -0.17 -5.05 6.82 71.98 0.49 -4.56 16 4 N -0.61 -19.25 2.40 -797.84 -1.91 -21.16 16 5 C 0.12 4.78 5.07 86.38 0.44 5.22 16 6 C 0.13 5.82 4.56 86.38 0.39 6.21 16 7 N -0.62 -31.48 2.49 -726.93 -1.81 -33.29 16 8 C 0.12 5.47 10.70 127.77 1.37 6.83 16 9 C -0.27 -15.74 9.93 84.03 0.83 -14.90 16 10 H 0.04 2.81 8.06 -2.91 -0.02 2.79 16 11 C 0.00 0.15 5.27 84.86 0.45 0.60 16 12 N -0.93 -56.42 13.97 21.65 0.30 -56.12 16 13 Si 0.91 44.93 24.75 68.60 1.70 46.63 16 14 H -0.23 -9.82 3.98 99.48 0.40 -9.42 16 15 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 16 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 17 C 0.50 15.96 7.32 87.66 0.64 16.60 16 18 O -0.56 -22.34 13.14 -3.04 -0.04 -22.38 16 19 C 0.05 1.01 3.66 85.56 0.31 1.32 16 20 N -0.50 -11.89 4.62 -692.93 -3.20 -15.09 16 21 C 0.05 0.71 6.99 86.66 0.61 1.31 16 22 C -0.10 -1.28 6.97 30.67 0.21 -1.07 16 23 C -0.15 -3.09 6.23 -19.48 -0.12 -3.22 16 24 C -0.10 -1.88 10.03 22.21 0.22 -1.66 16 25 C -0.13 -2.81 10.06 22.30 0.22 -2.59 16 26 C -0.13 -3.36 10.02 22.21 0.22 -3.14 16 27 C -0.13 -4.14 9.28 22.47 0.21 -3.93 16 28 C 0.07 1.97 5.23 38.29 0.20 2.17 16 29 H 0.04 1.09 7.11 -2.39 -0.02 1.07 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.12 1.99 5.79 -2.39 -0.01 1.98 16 33 H 0.05 1.52 6.47 -2.39 -0.02 1.50 16 34 H 0.09 2.15 8.14 -2.38 -0.02 2.14 16 35 H 0.04 1.54 6.34 -2.39 -0.02 1.52 16 36 H 0.07 2.91 6.85 -2.39 -0.02 2.89 16 37 H 0.06 2.53 7.36 -2.39 -0.02 2.51 16 38 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 39 H 0.06 2.79 0.89 -2.39 0.00 2.79 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.04 1.81 8.08 -2.38 -0.02 1.79 16 42 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 43 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.08 1.56 7.48 -2.38 -0.02 1.54 16 45 H 0.14 1.98 7.41 -2.39 -0.02 1.96 16 46 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 47 H 0.12 0.89 7.48 -2.39 -0.02 0.87 16 48 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 51 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 52 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 53 H 0.11 4.11 5.87 -2.91 -0.02 4.09 16 Total: -1.00 -76.37 400.80 3.13 -73.25 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.58 Total: 22.50 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 7.50 Total: 5.66 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -6.62 Total: -125.66 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.04 Total: -22.38 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.70 Total: 46.63 kcal Total: -76.37 3.13 -73.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284558560.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.944 kcal (2) G-P(sol) polarization free energy of solvation -76.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds