Wall clock time and date at job start Wed Apr 1 2020 04:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47280 * 2 1 4 4 N 1.46492 * 109.47268 * 179.97438 * 3 2 1 5 5 C 1.34782 * 120.00244 * 82.47129 * 4 3 2 6 6 O 1.21697 * 119.99738 * 180.91028 * 5 4 3 7 7 C 1.46671 * 119.99942 * 0.90741 * 5 4 3 8 8 C 1.37752 * 126.22983 * 171.07841 * 7 5 4 9 9 C 1.40095 * 107.11379 * 179.97438 * 8 7 5 10 10 C 1.35586 * 108.07036 * 359.97438 * 9 8 7 11 11 N 1.36001 * 108.63592 * 359.94231 * 10 9 8 12 12 H 0.97001 * 125.62909 * 179.97438 * 11 10 9 13 13 C 1.51503 * 110.16524 * 179.97438 * 10 9 8 14 14 C 1.54402 * 105.03265 * 343.03219 * 13 10 9 15 15 C 1.51352 * 141.74419 * 179.97438 * 9 8 7 16 16 C 1.46505 * 119.99742 * 262.46688 * 4 3 2 17 17 C 1.53041 * 109.46203 * 240.06533 * 16 4 3 18 18 C 1.53192 * 109.31431 * 178.61524 * 17 16 4 19 19 N 1.46930 * 108.77163 * 54.63665 * 18 17 16 20 20 C 1.36936 * 120.62868 * 126.41507 * 19 18 17 21 21 H 1.08005 * 120.00055 * 320.21914 * 20 19 18 22 22 C 1.38813 * 120.00301 * 140.21952 * 20 19 18 23 23 N 1.31620 * 119.99971 * 171.41348 * 22 20 19 24 24 Si 1.86804 * 119.99755 * 351.41120 * 22 20 19 25 25 H 1.48490 * 109.46826 * 85.33712 * 24 22 20 26 26 H 1.48502 * 109.46657 * 205.33972 * 24 22 20 27 27 H 1.48501 * 109.47152 * 325.33846 * 24 22 20 28 28 C 1.46923 * 118.74261 * 306.38981 * 19 18 17 29 29 C 1.53044 * 109.45833 * 120.00266 * 16 4 3 30 30 H 1.08996 * 109.47110 * 300.00615 * 1 2 3 31 31 H 1.09004 * 109.46758 * 60.00391 * 1 2 3 32 32 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47003 * 240.00060 * 2 1 3 34 34 H 1.09000 * 109.47225 * 119.99720 * 2 1 3 35 35 H 1.09003 * 109.47199 * 59.99555 * 3 2 1 36 36 H 1.08999 * 109.47269 * 300.00150 * 3 2 1 37 37 H 1.08010 * 126.44140 * 359.95238 * 8 7 5 38 38 H 1.08998 * 110.33136 * 224.14262 * 13 10 9 39 39 H 1.09002 * 110.41448 * 101.96239 * 13 10 9 40 40 H 1.09000 * 110.92111 * 267.65926 * 14 13 10 41 41 H 1.09007 * 110.95548 * 144.03173 * 14 13 10 42 42 H 1.08999 * 110.34266 * 78.11663 * 15 9 8 43 43 H 1.09002 * 110.33510 * 315.97479 * 15 9 8 44 44 H 1.08996 * 109.46129 * 0.02724 * 16 4 3 45 45 H 1.09005 * 109.50039 * 298.56856 * 17 16 4 46 46 H 1.09005 * 109.49336 * 58.66734 * 17 16 4 47 47 H 1.08995 * 109.58889 * 294.85120 * 18 17 16 48 48 H 1.08995 * 109.70152 * 174.49101 * 18 17 16 49 49 H 0.97001 * 119.99496 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.58946 * 293.82364 * 28 19 18 51 51 H 1.09002 * 109.70536 * 173.46239 * 28 19 18 52 52 H 1.09006 * 109.49589 * 301.34115 * 29 16 4 53 53 H 1.09001 * 109.49776 * 61.43039 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1794 1.2894 -1.1562 6 8 5.3963 1.2728 -1.1535 7 6 3.4468 1.1427 -2.4184 8 6 3.9933 1.1517 -3.6828 9 6 2.9386 0.9814 -4.5890 10 6 1.7882 0.8727 -3.8798 11 7 2.0833 0.9676 -2.5556 12 1 1.4422 0.9221 -1.8291 13 6 0.6124 0.6868 -4.8171 14 6 1.1316 1.1268 -6.2030 15 6 2.6501 0.8788 -6.0712 16 6 4.2369 1.6090 1.2588 17 6 5.1155 2.8594 1.1759 18 6 5.8528 3.0496 2.5052 19 7 6.5867 1.8161 2.8195 20 6 7.9281 1.8527 3.0922 21 1 8.5770 2.5032 2.5246 22 6 8.4540 1.0538 4.0983 23 7 9.7580 0.9597 4.2499 24 14 7.3108 0.1122 5.2368 25 1 6.9413 -1.1813 4.6081 26 1 7.9985 -0.1434 6.5279 27 1 6.0840 0.9130 5.4794 28 6 5.8539 0.5428 2.8362 29 6 5.1166 0.3807 1.5032 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 5.0384 1.2684 -3.9292 38 1 -0.2217 1.3166 -4.5078 39 1 0.3074 -0.3594 -4.8416 40 1 0.9237 2.1821 -6.3795 41 1 0.7036 0.5102 -6.9934 42 1 2.9043 -0.1153 -6.4388 43 1 3.2075 1.6386 -6.6191 44 1 3.5281 1.7172 2.0797 45 1 5.8411 2.7415 0.3710 46 1 4.4907 3.7305 0.9785 47 1 5.1323 3.2577 3.2962 48 1 6.5534 3.8803 2.4212 49 1 10.1254 0.4011 4.9527 50 1 5.1335 0.5464 3.6542 51 1 6.5537 -0.2823 2.9693 52 1 4.4927 -0.5124 1.5387 53 1 5.8421 0.2862 0.6952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317004608.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:51 Heat of formation + Delta-G solvation = 40.750576 kcal Electronic energy + Delta-G solvation = -31920.373293 eV Core-core repulsion = 27986.438163 eV Total energy + Delta-G solvation = -3933.935129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.92274 -41.09990 -38.87394 -37.85571 -36.68517 -35.04332 -33.82385 -32.10174 -31.97702 -31.90977 -29.07646 -28.17472 -27.45257 -26.60812 -24.63822 -24.27971 -22.99949 -22.64086 -22.02225 -21.43802 -20.42487 -20.07166 -18.93145 -18.24939 -17.53381 -17.03630 -16.75655 -16.70886 -16.18401 -15.85619 -15.68117 -15.36066 -15.16977 -14.91790 -14.80068 -14.54117 -14.33967 -14.25027 -14.15915 -13.93052 -13.82933 -13.55982 -13.44745 -13.24446 -12.95269 -12.75314 -12.68856 -12.57031 -12.43487 -12.30804 -12.20088 -12.09824 -11.97169 -11.94027 -11.75022 -11.66962 -11.49989 -11.38319 -10.83174 -10.73603 -9.92783 -9.70492 -8.91364 -8.76261 -8.18696 -5.68248 0.37859 1.29772 1.37733 1.49673 1.62913 1.70287 1.96925 2.28042 2.40427 3.08246 3.29364 3.34546 3.61498 3.64382 3.74706 3.80310 3.90977 3.99069 4.11119 4.17338 4.25698 4.27522 4.31968 4.33306 4.39973 4.45231 4.47043 4.57441 4.58946 4.64247 4.73969 4.75691 4.85912 4.89351 4.91243 4.97405 5.00483 5.01363 5.07059 5.09624 5.10094 5.17197 5.26278 5.30821 5.31691 5.41966 5.44136 5.61013 5.75432 5.92492 5.94412 6.13451 6.31381 6.48004 6.93361 7.08858 7.56989 8.02443 9.00976 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.002830 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.948384 B = 9890.916981 C =10690.673098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.163 4.163 3 C 0.083 3.917 4 N -0.604 5.604 5 C 0.580 3.420 6 O -0.561 6.561 7 C -0.066 4.066 8 C -0.111 4.111 9 C -0.221 4.221 10 C 0.021 3.979 11 N -0.521 5.521 12 H 0.431 0.569 13 C -0.039 4.039 14 C -0.107 4.107 15 C -0.054 4.054 16 C 0.168 3.832 17 C -0.139 4.139 18 C 0.151 3.849 19 N -0.620 5.620 20 C -0.257 4.257 21 H 0.031 0.969 22 C -0.033 4.033 23 N -0.964 5.964 24 Si 0.966 3.034 25 H -0.272 1.272 26 H -0.307 1.307 27 H -0.248 1.248 28 C 0.126 3.874 29 C -0.138 4.138 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.116 0.884 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.263 0.737 50 H 0.048 0.952 51 H 0.044 0.956 52 H 0.072 0.928 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.228 -1.065 -17.645 36.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C -0.039 4.039 4 N -0.335 5.335 5 C 0.371 3.629 6 O -0.440 6.440 7 C -0.178 4.178 8 C -0.138 4.138 9 C -0.227 4.227 10 C -0.098 4.098 11 N -0.129 5.129 12 H 0.282 0.718 13 C -0.077 4.077 14 C -0.145 4.145 15 C -0.091 4.091 16 C 0.066 3.934 17 C -0.179 4.179 18 C 0.026 3.974 19 N -0.345 5.345 20 C -0.387 4.387 21 H 0.049 0.951 22 C -0.228 4.228 23 N -0.610 5.610 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.236 1.236 27 H -0.172 1.172 28 C 0.001 3.999 29 C -0.178 4.178 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.134 0.866 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.091 0.909 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -31.581 -1.107 -17.328 36.039 hybrid contribution 1.054 -0.529 1.015 1.556 sum -30.527 -1.636 -16.313 34.651 Atomic orbital electron populations 1.21779 0.91981 1.03560 1.03449 1.22290 0.98626 0.96068 1.03240 1.22384 0.78077 0.98110 1.05340 1.48100 1.07319 1.71843 1.06191 1.17421 0.86365 0.76278 0.82840 1.90866 1.14642 1.52073 1.86436 1.20124 0.83287 1.20151 0.94211 1.20817 0.98961 1.03633 0.90366 1.20760 0.92589 1.11683 0.97663 1.22239 1.00347 1.03780 0.83424 1.43007 1.06458 1.55838 1.07562 0.71797 1.20928 0.92298 1.03771 0.90671 1.22373 0.93145 1.02988 0.95946 1.20610 0.97497 1.02174 0.88860 1.20959 0.93367 0.94217 0.84868 1.22289 0.99066 0.97523 0.98998 1.21043 0.94291 0.87954 0.94152 1.44373 1.05234 1.02387 1.82519 1.18701 0.83517 1.24332 1.12127 0.95121 1.26354 0.97057 1.00742 0.98651 1.69937 1.12734 1.42946 1.35337 0.85616 0.79108 0.78879 0.77106 1.19848 1.23573 1.17192 1.21400 0.94558 0.88336 0.95608 1.22285 0.99091 0.97972 0.98495 0.90357 0.91604 0.91198 0.92842 0.90514 0.86115 0.89775 0.85573 0.88540 0.88117 0.90078 0.87593 0.90495 0.91301 0.86626 0.93579 0.90075 0.93113 0.93235 0.92790 0.93436 0.93719 0.90921 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.77 71.98 0.70 -0.32 16 2 C -0.16 -2.22 5.19 30.59 0.16 -2.06 16 3 C 0.08 1.31 4.94 86.38 0.43 1.74 16 4 N -0.60 -16.12 2.44 -802.36 -1.96 -18.08 16 5 C 0.58 19.66 7.00 86.44 0.61 20.26 16 6 O -0.56 -24.94 13.13 -4.34 -0.06 -25.00 16 7 C -0.07 -1.89 6.46 40.24 0.26 -1.63 16 8 C -0.11 -3.26 10.67 22.61 0.24 -3.02 16 9 C -0.22 -4.90 6.89 -19.82 -0.14 -5.04 16 10 C 0.02 0.38 8.02 41.55 0.33 0.71 16 11 N -0.52 -10.23 4.18 -170.49 -0.71 -10.94 16 12 H 0.43 6.16 2.65 -92.71 -0.25 5.92 16 13 C -0.04 -0.32 6.79 30.58 0.21 -0.11 16 14 C -0.11 -0.79 7.12 31.55 0.22 -0.56 16 15 C -0.05 -0.77 6.78 30.54 0.21 -0.57 16 16 C 0.17 5.21 2.51 45.02 0.11 5.32 16 17 C -0.14 -5.01 5.27 30.67 0.16 -4.85 16 18 C 0.15 6.23 6.52 86.36 0.56 6.79 16 19 N -0.62 -31.35 2.63 -699.09 -1.84 -33.19 16 20 C -0.26 -15.83 9.98 84.03 0.84 -14.99 16 21 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 22 C -0.03 -2.06 5.37 84.86 0.46 -1.60 16 23 N -0.96 -64.02 13.97 21.65 0.30 -63.72 16 24 Si 0.97 48.15 24.35 68.60 1.67 49.82 16 25 H -0.27 -12.86 6.57 99.48 0.65 -12.21 16 26 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 27 H -0.25 -11.36 6.65 99.48 0.66 -10.70 16 28 C 0.13 5.60 4.18 86.36 0.36 5.97 16 29 C -0.14 -5.31 5.26 30.67 0.16 -5.15 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.27 7.43 -2.39 -0.02 0.25 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.92 6.37 -2.39 -0.02 0.91 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.12 1.30 7.77 -2.39 -0.02 1.28 16 36 H 0.08 1.19 5.16 -2.39 -0.01 1.17 16 37 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.12 2.81 7.70 -2.39 -0.02 2.80 16 45 H 0.05 2.07 6.24 -2.38 -0.01 2.05 16 46 H 0.08 2.41 8.14 -2.38 -0.02 2.40 16 47 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 49 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 50 H 0.05 1.89 6.84 -2.39 -0.02 1.87 16 51 H 0.04 2.21 5.18 -2.39 -0.01 2.20 16 52 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 53 H 0.05 2.30 6.17 -2.39 -0.01 2.29 16 Total: -1.00 -84.73 391.30 3.86 -80.88 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.57 Total: 19.34 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.88 Total: 0.89 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -4.21 Total: -125.93 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.06 Total: -25.00 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.67 Total: 49.82 kcal Total: -84.73 3.86 -80.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317004608.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.629 kcal (2) G-P(sol) polarization free energy of solvation -84.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds