Wall clock time and date at job start Wed Apr 1 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47386 * 2 1 4 4 C 1.52997 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47470 * 305.00466 * 4 3 2 6 6 C 1.50697 * 109.46978 * 184.99989 * 4 3 2 7 7 O 1.21286 * 120.00284 * 240.00284 * 6 4 3 8 8 N 1.34780 * 119.99712 * 60.00222 * 6 4 3 9 9 C 1.46499 * 119.99584 * 180.02562 * 8 6 4 10 10 C 1.53009 * 109.46882 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47057 * 179.97438 * 10 9 8 12 12 H 1.09000 * 110.64814 * 305.70106 * 11 10 9 13 13 C 1.55155 * 110.72120 * 182.55515 * 11 10 9 14 14 C 1.54913 * 101.58357 * 206.13762 * 13 11 10 15 15 N 1.47423 * 104.82922 * 37.01120 * 14 13 11 16 16 C 1.36946 * 125.64415 * 155.90766 * 15 14 13 17 17 H 1.07990 * 119.99662 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99774 * 359.96918 * 16 15 14 19 19 N 1.31621 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99516 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47484 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47376 * 120.00502 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00070 * 20 18 16 24 24 C 1.47312 * 108.73726 * 335.71267 * 15 14 13 25 25 C 1.50704 * 109.47006 * 65.00463 * 4 3 2 26 26 C 1.38221 * 119.61842 * 84.99470 * 25 4 3 27 27 C 1.38631 * 119.16077 * 179.74593 * 26 25 4 28 28 C 1.38675 * 118.41792 * 0.25627 * 27 26 25 29 29 C 1.38184 * 119.16617 * 359.97438 * 28 27 26 30 30 N 1.31861 * 119.61576 * 265.28477 * 25 4 3 31 31 H 1.09009 * 109.46809 * 299.99922 * 1 2 3 32 32 H 1.08997 * 109.47322 * 59.99197 * 1 2 3 33 33 H 1.08999 * 109.47721 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46780 * 240.00531 * 2 1 3 35 35 H 1.08996 * 109.47723 * 120.00141 * 2 1 3 36 36 H 1.09003 * 109.46728 * 60.00498 * 3 2 1 37 37 H 1.08996 * 109.46804 * 300.00703 * 3 2 1 38 38 H 0.96999 * 120.00314 * 0.02562 * 8 6 4 39 39 H 1.09001 * 109.47254 * 299.99911 * 9 8 6 40 40 H 1.08996 * 109.47508 * 60.00301 * 9 8 6 41 41 H 1.09001 * 109.46919 * 299.99890 * 10 9 8 42 42 H 1.08996 * 109.46988 * 59.99756 * 10 9 8 43 43 H 1.08998 * 111.00351 * 324.21615 * 13 11 10 44 44 H 1.08996 * 111.00254 * 88.02460 * 13 11 10 45 45 H 1.09006 * 110.36227 * 155.84845 * 14 13 11 46 46 H 1.08995 * 110.36732 * 278.06141 * 14 13 11 47 47 H 0.97001 * 119.99580 * 179.97438 * 19 18 16 48 48 H 1.09004 * 110.06676 * 241.86951 * 24 15 14 49 49 H 1.09004 * 109.84748 * 120.61653 * 24 15 14 50 50 H 1.08002 * 120.42313 * 0.02855 * 26 25 4 51 51 H 1.07997 * 120.79047 * 180.23231 * 27 26 25 52 52 H 1.08006 * 120.41367 * 180.02562 * 28 27 26 53 53 H 1.07993 * 119.61608 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8408 6 6 4.0724 2.8578 0.1232 7 8 4.7693 3.3324 -0.7486 8 7 3.7473 3.5962 1.2028 9 6 4.2353 4.9723 1.3229 10 6 3.7265 5.5815 2.6310 11 6 4.2366 7.0184 2.7568 12 1 5.3216 7.0513 2.6569 13 6 3.7903 7.6434 4.1049 14 6 3.7751 9.1531 3.7580 15 7 3.2828 9.2164 2.3699 16 6 2.6690 10.2941 1.7891 17 1 2.3436 10.2407 0.7608 18 6 2.4652 11.4550 2.5223 19 7 2.8622 11.5201 3.7755 20 14 1.6274 12.9247 1.7303 21 1 1.2797 12.5979 0.3240 22 1 0.3897 13.2535 2.4820 23 1 2.5462 14.0911 1.7553 24 6 3.5642 7.9303 1.7089 25 6 4.0717 0.8422 -1.2887 26 6 4.2002 1.6404 -2.4099 27 6 4.6677 1.0796 -3.5884 28 6 4.9848 -0.2704 -3.5965 29 6 4.8260 -1.0064 -2.4378 30 7 4.3777 -0.4396 -1.3347 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.6768 1.9563 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 3.1903 3.2165 1.9003 39 1 5.3253 4.9727 1.3221 40 1 3.8712 5.5617 0.4814 41 1 2.6365 5.5811 2.6322 42 1 4.0910 4.9920 3.4722 43 1 2.7958 7.2970 4.3859 44 1 4.5129 7.4302 4.8926 45 1 3.0995 9.6888 4.4250 46 1 4.7809 9.5678 3.8248 47 1 2.7200 12.3315 4.2877 48 1 4.2362 8.0829 0.8644 49 1 2.6330 7.4782 1.3672 50 1 3.9440 2.6887 -2.3672 51 1 4.7818 1.6797 -4.4790 52 1 5.3521 -0.7403 -4.4969 53 1 5.0704 -2.0584 -2.4361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317797914.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:08 Heat of formation + Delta-G solvation = -13.508884 kcal Electronic energy + Delta-G solvation = -29856.176972 eV Core-core repulsion = 25919.888976 eV Total energy + Delta-G solvation = -3936.287996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.82199 -40.33507 -39.37565 -36.77920 -36.50827 -34.75399 -33.40425 -33.02673 -32.48835 -30.85363 -30.02345 -28.08219 -26.64191 -25.85223 -24.49264 -23.99021 -23.10453 -22.11954 -21.89435 -21.35226 -20.59354 -18.89021 -18.19729 -17.96145 -17.20307 -17.08560 -16.80817 -16.60731 -16.28555 -16.19089 -15.79953 -15.52573 -15.25055 -14.85879 -14.57475 -14.34958 -14.26179 -14.00628 -13.83079 -13.75066 -13.52738 -13.37485 -13.30060 -13.10606 -13.00880 -12.81954 -12.70311 -12.39454 -12.22849 -12.04673 -12.00182 -11.97595 -11.76950 -11.53801 -11.52089 -11.41935 -11.23534 -10.87915 -10.75082 -10.54084 -10.37901 -10.06931 -9.83477 -8.87542 -7.77795 -5.21885 0.20239 0.40396 1.45129 1.46066 1.54279 1.56550 2.07857 2.48928 2.90082 3.24828 3.31222 3.51757 3.74793 3.77030 3.92053 3.96141 3.96735 4.04992 4.10811 4.19146 4.24194 4.28601 4.30629 4.35944 4.38011 4.48955 4.65074 4.67121 4.70287 4.73113 4.75864 4.80887 4.90023 4.92240 4.95463 5.02480 5.05652 5.13461 5.20419 5.25776 5.26427 5.28042 5.33907 5.35862 5.44473 5.46646 5.49347 5.52945 5.69974 5.83236 5.84177 6.32624 6.52390 7.03539 7.11744 7.21165 7.79623 8.43407 9.24027 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.001906 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.937753 B =14684.342825 C =14931.495042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.101 4.101 4 C -0.050 4.050 5 H 0.129 0.871 6 C 0.516 3.484 7 O -0.572 6.572 8 N -0.709 5.709 9 C 0.124 3.876 10 C -0.100 4.100 11 C -0.084 4.084 12 H 0.076 0.924 13 C -0.121 4.121 14 C 0.149 3.851 15 N -0.630 5.630 16 C -0.238 4.238 17 H 0.077 0.923 18 C -0.070 4.070 19 N -0.949 5.949 20 Si 0.980 3.020 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.293 1.293 24 C 0.133 3.867 25 C 0.122 3.878 26 C -0.154 4.154 27 C -0.095 4.095 28 C -0.170 4.170 29 C 0.080 3.920 30 N -0.492 5.492 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.418 0.582 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.071 0.929 46 H -0.019 1.019 47 H 0.247 0.753 48 H 0.011 0.989 49 H 0.029 0.971 50 H 0.132 0.868 51 H 0.147 0.853 52 H 0.162 0.838 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -29.996 -7.590 30.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.139 4.139 4 C -0.071 4.071 5 H 0.147 0.853 6 C 0.302 3.698 7 O -0.451 6.451 8 N -0.361 5.361 9 C 0.000 4.000 10 C -0.138 4.138 11 C -0.104 4.104 12 H 0.095 0.905 13 C -0.160 4.160 14 C 0.024 3.976 15 N -0.356 5.356 16 C -0.367 4.367 17 H 0.095 0.905 18 C -0.262 4.262 19 N -0.599 5.599 20 Si 0.808 3.192 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.220 1.220 24 C 0.009 3.991 25 C -0.015 4.015 26 C -0.174 4.174 27 C -0.121 4.121 28 C -0.189 4.189 29 C -0.077 4.077 30 N -0.202 5.202 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.255 0.745 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.089 0.911 46 H -0.001 1.001 47 H 0.056 0.944 48 H 0.029 0.971 49 H 0.047 0.953 50 H 0.150 0.850 51 H 0.165 0.835 52 H 0.180 0.820 53 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.137 -29.959 -7.419 30.864 hybrid contribution -0.152 1.884 -1.022 2.148 sum -0.015 -28.075 -8.441 29.317 Atomic orbital electron populations 1.21771 0.95102 1.02029 1.02035 1.21432 0.96046 0.95171 1.02467 1.21610 0.89593 0.98973 1.03723 1.20143 0.98410 0.91743 0.96845 0.85350 1.20685 0.79630 0.88095 0.81397 1.90688 1.39686 1.73856 1.40918 1.45840 1.53316 1.13958 1.22970 1.21297 0.98940 0.81365 0.98358 1.21636 1.01674 0.93768 0.96735 1.22006 0.99666 0.93877 0.94821 0.90525 1.22873 1.01359 0.95218 0.96525 1.21758 0.95616 0.93720 0.86544 1.44958 1.68626 1.11545 1.10462 1.19489 1.29671 0.91554 0.96005 0.90530 1.25644 1.02725 1.00843 0.97024 1.70075 1.53437 1.27297 1.09086 0.84984 0.77449 0.78905 0.77849 1.19300 1.21505 1.21976 1.21631 0.96556 0.86244 0.94714 1.20609 0.96633 0.89859 0.94441 1.22378 0.99774 1.01500 0.93711 1.21943 0.95846 0.95969 0.98347 1.22467 1.00883 0.94570 1.00981 1.23189 0.95062 1.01477 0.87956 1.67394 1.11488 1.11369 1.29917 0.91709 0.93407 0.92283 0.93259 0.90708 0.88523 0.92299 0.74489 0.92137 0.93084 0.90472 0.88392 0.91258 0.89660 0.91086 1.00060 0.94353 0.97131 0.95343 0.85021 0.83540 0.82025 0.80150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.11 -1.48 5.71 30.59 0.17 -1.30 16 3 C -0.10 -1.37 4.62 30.60 0.14 -1.23 16 4 C -0.05 -0.86 2.52 -12.29 -0.03 -0.89 16 5 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 6 C 0.52 11.36 6.94 87.66 0.61 11.97 16 7 O -0.57 -17.37 13.11 -3.05 -0.04 -17.41 16 8 N -0.71 -12.59 5.42 -463.04 -2.51 -15.09 16 9 C 0.12 2.80 5.54 86.38 0.48 3.28 16 10 C -0.10 -2.13 4.72 30.60 0.14 -1.99 16 11 C -0.08 -2.62 2.95 -9.61 -0.03 -2.65 16 12 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.12 -4.22 6.54 31.99 0.21 -4.01 16 14 C 0.15 7.38 5.89 86.86 0.51 7.89 16 15 N -0.63 -33.19 3.40 -691.23 -2.35 -35.54 16 16 C -0.24 -13.72 10.28 84.03 0.86 -12.86 16 17 H 0.08 4.28 7.83 -2.92 -0.02 4.25 16 18 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 19 N -0.95 -57.42 10.09 21.65 0.22 -57.20 16 20 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 C 0.13 5.51 6.13 86.67 0.53 6.04 16 25 C 0.12 2.62 4.89 42.55 0.21 2.83 16 26 C -0.15 -3.54 8.27 22.36 0.18 -3.36 16 27 C -0.10 -1.75 10.18 22.47 0.23 -1.52 16 28 C -0.17 -2.46 10.11 22.36 0.23 -2.23 16 29 C 0.08 1.27 11.18 84.67 0.95 2.22 16 30 N -0.49 -9.98 9.59 -183.89 -1.76 -11.75 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.82 6.87 -2.39 -0.02 0.80 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.92 7.43 -2.39 -0.02 0.90 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.42 4.54 7.83 -92.71 -0.73 3.82 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.40 7.59 -2.39 -0.02 1.38 16 41 H 0.08 1.61 8.01 -2.39 -0.02 1.59 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 44 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.07 4.02 5.88 -2.38 -0.01 4.00 16 46 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.03 1.14 7.73 -2.38 -0.02 1.13 16 50 H 0.13 3.47 5.94 -2.91 -0.02 3.45 16 51 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 52 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 53 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -75.67 417.66 2.32 -73.35 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.16 Total: 17.54 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.58 Total: -2.44 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.40 Total: -119.58 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.04 Total: -17.41 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -75.67 2.32 -73.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317797914.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.840 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds