Wall clock time and date at job start Wed Apr 1 2020 03:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47227 * 174.60691 * 3 2 1 5 5 H 1.09006 * 109.46721 * 305.76175 * 4 3 2 6 6 C 1.50700 * 109.47499 * 65.76061 * 4 3 2 7 7 O 1.21286 * 119.99796 * 27.56877 * 6 4 3 8 8 N 1.34771 * 120.00077 * 207.57566 * 6 4 3 9 9 C 1.46503 * 119.99715 * 184.80136 * 8 6 4 10 10 C 1.53010 * 109.47054 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47149 * 179.97438 * 10 9 8 12 12 H 1.09004 * 110.64093 * 54.29719 * 11 10 9 13 13 C 1.55150 * 110.72053 * 177.43906 * 11 10 9 14 14 C 1.55127 * 101.48669 * 153.73703 * 13 11 10 15 15 N 1.47422 * 104.93851 * 323.21862 * 14 13 11 16 16 C 1.36934 * 125.64948 * 203.96314 * 15 14 13 17 17 H 1.07998 * 120.00342 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99869 * 0.05412 * 16 15 14 19 19 N 1.31621 * 120.00118 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47346 * 119.99632 * 20 18 16 23 23 H 1.48501 * 109.47052 * 239.99532 * 20 18 16 24 24 C 1.47025 * 108.70221 * 24.00782 * 15 14 13 25 25 C 1.50700 * 109.47354 * 185.76310 * 4 3 2 26 26 C 1.38219 * 119.61469 * 274.97771 * 25 4 3 27 27 C 1.38633 * 119.16020 * 180.02562 * 26 25 4 28 28 C 1.38679 * 118.41680 * 359.97438 * 27 26 25 29 29 C 1.38180 * 119.16302 * 359.97438 * 28 27 26 30 30 N 1.31855 * 119.61741 * 94.99525 * 25 4 3 31 31 H 1.09001 * 109.46742 * 299.99364 * 1 2 3 32 32 H 1.08996 * 109.47079 * 59.99847 * 1 2 3 33 33 H 1.09001 * 109.47527 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46516 * 239.99932 * 2 1 3 35 35 H 1.08997 * 109.47214 * 120.00692 * 2 1 3 36 36 H 1.08998 * 109.46727 * 54.60310 * 3 2 1 37 37 H 1.09003 * 109.47249 * 294.60581 * 3 2 1 38 38 H 0.96995 * 120.00497 * 4.79831 * 8 6 4 39 39 H 1.09001 * 109.47488 * 299.99487 * 9 8 6 40 40 H 1.08996 * 109.47183 * 60.00000 * 9 8 6 41 41 H 1.09001 * 109.46602 * 300.00088 * 10 9 8 42 42 H 1.08996 * 109.47077 * 59.99994 * 10 9 8 43 43 H 1.09001 * 111.00394 * 271.94092 * 13 11 10 44 44 H 1.09000 * 111.00653 * 35.78713 * 13 11 10 45 45 H 1.08997 * 110.41727 * 204.29509 * 14 13 11 46 46 H 1.08996 * 110.30238 * 82.08836 * 14 13 11 47 47 H 0.97002 * 120.00013 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.87949 * 239.51267 * 24 15 14 49 49 H 1.09006 * 110.00789 * 118.42810 * 24 15 14 50 50 H 1.07996 * 120.42337 * 0.03774 * 26 25 4 51 51 H 1.08000 * 120.79533 * 179.97438 * 27 26 25 52 52 H 1.08004 * 120.41452 * 179.97438 * 28 27 26 53 53 H 1.08002 * 119.61318 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4446 0.1356 5 1 3.8511 0.8709 1.0169 6 6 4.1784 0.8217 -1.0914 7 8 3.5944 0.8704 -2.1533 8 7 5.3767 0.2104 -1.0087 9 6 6.0225 -0.3023 -2.2196 10 6 7.3615 -0.9443 -1.8507 11 6 8.0357 -1.4803 -3.1152 12 1 8.1241 -0.6949 -3.8659 13 6 9.4270 -2.0811 -2.7829 14 6 9.5997 -3.1126 -3.9286 15 7 8.2510 -3.6658 -4.1484 16 6 7.9695 -4.8870 -4.7001 17 1 6.9434 -5.2021 -4.8194 18 6 9.0030 -5.7203 -5.1055 19 7 10.2535 -5.3364 -4.9601 20 14 8.6190 -7.3866 -5.8575 21 1 7.1475 -7.5790 -5.9094 22 1 9.1757 -7.4492 -7.2328 23 1 9.2287 -8.4566 -5.0275 24 6 7.2583 -2.6886 -3.6781 25 6 4.0537 2.8627 0.2778 26 6 4.2832 3.6228 -0.8535 27 6 4.7341 4.9260 -0.7117 28 6 4.9378 5.4183 0.5687 29 6 4.6857 4.5995 1.6528 30 7 4.2586 3.3638 1.4801 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.5999 1.9834 0.8377 37 1 1.7577 1.9277 -0.9344 38 1 5.8115 0.1100 -0.1475 39 1 5.3787 -1.0473 -2.6872 40 1 6.1932 0.5188 -2.9158 41 1 8.0051 -0.1990 -1.3833 42 1 7.1912 -1.7653 -1.1543 43 1 10.2024 -1.3160 -2.8220 44 1 9.4172 -2.5757 -1.8116 45 1 10.2892 -3.9018 -3.6289 46 1 9.9589 -2.6186 -4.8313 47 1 10.9757 -5.9186 -5.2437 48 1 6.6441 -3.1321 -2.8944 49 1 6.6270 -2.3696 -4.5075 50 1 4.1132 3.2068 -1.8356 51 1 4.9224 5.5433 -1.5777 52 1 5.2889 6.4289 0.7165 53 1 4.8422 4.9753 2.6532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317797979.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:23 Heat of formation + Delta-G solvation = -20.814915 kcal Electronic energy + Delta-G solvation = -29924.395339 eV Core-core repulsion = 25987.790530 eV Total energy + Delta-G solvation = -3936.604809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.79488 -40.44812 -39.42936 -36.85939 -36.17164 -34.78650 -33.68776 -33.26290 -32.41931 -30.77016 -30.07138 -28.21485 -26.74104 -25.75698 -24.54480 -23.99877 -23.01880 -22.43457 -21.90904 -21.32484 -20.54942 -18.90512 -18.53282 -17.87896 -17.10865 -17.06104 -16.97414 -16.58832 -16.28384 -16.08811 -15.79543 -15.58239 -15.29746 -15.01879 -14.56679 -14.36421 -14.27709 -14.11788 -13.97574 -13.76126 -13.55575 -13.39677 -13.24769 -13.09987 -12.83476 -12.82750 -12.72013 -12.59861 -12.24354 -12.22898 -11.98490 -11.88307 -11.78828 -11.60371 -11.55201 -11.45154 -11.26636 -10.89846 -10.83920 -10.75450 -10.45336 -10.11676 -9.94464 -8.88628 -7.78733 -5.22990 0.08819 0.30685 1.44710 1.45698 1.49852 1.56303 2.09830 2.48357 2.77256 3.23774 3.30348 3.55533 3.72810 3.74719 3.82022 3.90053 3.92087 3.99908 4.08312 4.14799 4.15920 4.22121 4.23300 4.32351 4.35345 4.42912 4.57683 4.61885 4.67801 4.70200 4.72728 4.80318 4.81416 4.87996 4.90720 4.97969 5.02075 5.09913 5.17120 5.17656 5.21358 5.24498 5.26642 5.33332 5.38275 5.42867 5.44452 5.50529 5.68007 5.73780 5.82830 6.31568 6.49118 6.96406 7.10833 7.17673 7.78665 8.42444 9.23196 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.002081 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.769946 B =13449.066244 C =14926.286230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.089 4.089 4 C -0.051 4.051 5 H 0.123 0.877 6 C 0.523 3.477 7 O -0.568 6.568 8 N -0.715 5.715 9 C 0.125 3.875 10 C -0.100 4.100 11 C -0.083 4.083 12 H 0.078 0.922 13 C -0.122 4.122 14 C 0.149 3.851 15 N -0.629 5.629 16 C -0.239 4.239 17 H 0.077 0.923 18 C -0.069 4.069 19 N -0.949 5.949 20 Si 0.980 3.020 21 H -0.269 1.269 22 H -0.292 1.292 23 H -0.288 1.288 24 C 0.135 3.865 25 C 0.127 3.873 26 C -0.181 4.181 27 C -0.076 4.076 28 C -0.167 4.167 29 C 0.093 3.907 30 N -0.495 5.495 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.414 0.586 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.071 0.929 46 H -0.017 1.017 47 H 0.247 0.753 48 H 0.025 0.975 49 H 0.011 0.989 50 H 0.122 0.878 51 H 0.154 0.846 52 H 0.168 0.832 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 23.536 17.325 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.127 4.127 4 C -0.073 4.073 5 H 0.141 0.859 6 C 0.309 3.691 7 O -0.447 6.447 8 N -0.367 5.367 9 C 0.001 3.999 10 C -0.138 4.138 11 C -0.103 4.103 12 H 0.097 0.903 13 C -0.160 4.160 14 C 0.024 3.976 15 N -0.355 5.355 16 C -0.368 4.368 17 H 0.094 0.906 18 C -0.261 4.261 19 N -0.599 5.599 20 Si 0.808 3.192 21 H -0.193 1.193 22 H -0.219 1.219 23 H -0.215 1.215 24 C 0.009 3.991 25 C -0.010 4.010 26 C -0.201 4.201 27 C -0.102 4.102 28 C -0.186 4.186 29 C -0.064 4.064 30 N -0.205 5.205 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.250 0.750 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.001 0.999 47 H 0.057 0.943 48 H 0.043 0.957 49 H 0.029 0.971 50 H 0.140 0.860 51 H 0.172 0.828 52 H 0.185 0.815 53 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.181 22.879 17.203 31.514 hybrid contribution 0.405 -0.717 -1.508 1.718 sum -12.775 22.162 15.695 30.012 Atomic orbital electron populations 1.21719 0.94678 1.02089 1.02056 1.21546 0.97115 0.95844 1.01794 1.21406 0.90499 0.98145 1.02696 1.20222 0.97542 0.92224 0.97282 0.85944 1.20615 0.80762 0.77573 0.90168 1.90702 1.62169 1.60133 1.31704 1.45994 1.20357 1.58693 1.11663 1.21298 0.93705 0.97946 0.86962 1.21629 0.94501 1.00879 0.96816 1.21998 0.95114 0.95804 0.97372 0.90321 1.22914 0.96475 0.98092 0.98553 1.21794 0.87738 0.94732 0.93310 1.44868 1.02729 1.15777 1.72140 1.19488 0.92893 0.92342 1.32127 0.90551 1.25646 0.95226 1.02562 1.02699 1.70071 0.98424 1.37409 1.53983 0.84979 0.77684 0.79215 0.77277 1.19326 1.21863 1.21482 1.21556 0.91982 0.89878 0.95636 1.20513 0.96474 0.94969 0.89048 1.22122 1.01727 0.96410 0.99848 1.21937 0.94377 0.94498 0.99388 1.22540 1.00575 1.02838 0.92650 1.23313 0.93518 0.88430 1.01103 1.67425 1.12746 1.15490 1.24817 0.91528 0.93239 0.92297 0.93723 0.90786 0.89924 0.92131 0.74971 0.93087 0.91912 0.88680 0.90783 0.89558 0.91430 0.91074 0.99918 0.94308 0.95664 0.97079 0.86026 0.82796 0.81477 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.13 -2.28 5.65 30.59 0.17 -2.11 16 3 C -0.09 -1.64 4.37 30.59 0.13 -1.51 16 4 C -0.05 -0.94 2.50 -12.29 -0.03 -0.97 16 5 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 6 C 0.52 12.13 5.07 87.66 0.44 12.58 16 7 O -0.57 -17.48 14.72 -3.05 -0.04 -17.52 16 8 N -0.72 -14.52 5.55 -463.04 -2.57 -17.09 16 9 C 0.12 3.01 5.55 86.38 0.48 3.49 16 10 C -0.10 -2.31 4.72 30.60 0.14 -2.16 16 11 C -0.08 -2.67 2.95 -9.61 -0.03 -2.70 16 12 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 13 C -0.12 -4.34 6.55 32.06 0.21 -4.13 16 14 C 0.15 7.49 5.89 86.93 0.51 8.00 16 15 N -0.63 -33.57 3.40 -691.57 -2.35 -35.92 16 16 C -0.24 -13.94 10.27 84.03 0.86 -13.08 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 19 N -0.95 -57.71 10.09 21.65 0.22 -57.49 16 20 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 C 0.13 5.68 6.11 86.73 0.53 6.21 16 25 C 0.13 2.40 5.78 42.55 0.25 2.65 16 26 C -0.18 -3.42 9.18 22.36 0.21 -3.22 16 27 C -0.08 -1.04 10.18 22.47 0.23 -0.81 16 28 C -0.17 -1.71 10.11 22.36 0.23 -1.48 16 29 C 0.09 1.15 11.18 84.67 0.95 2.10 16 30 N -0.50 -8.72 10.27 -183.90 -1.89 -10.61 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.04 1.04 7.17 -2.38 -0.02 1.02 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.32 7.65 -2.39 -0.02 1.31 16 38 H 0.41 6.14 8.48 -92.71 -0.79 5.36 16 39 H 0.05 1.49 7.58 -2.39 -0.02 1.47 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.72 8.00 -2.39 -0.02 1.70 16 43 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 45 H 0.07 4.06 5.87 -2.39 -0.01 4.05 16 46 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 48 H 0.03 1.05 7.73 -2.39 -0.02 1.03 16 49 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 50 H 0.12 2.71 6.65 -2.91 -0.02 2.69 16 51 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 52 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 53 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -75.02 421.55 1.95 -73.07 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.09 Total: 19.03 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 6.46 Total: -2.31 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -6.59 Total: -121.11 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.04 Total: -17.52 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -75.02 1.95 -73.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317797979.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.257 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds