Wall clock time and date at job start Wed Apr 1 2020 03:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47327 * 2 1 4 4 C 1.52999 * 109.47188 * 120.00279 * 2 1 3 5 5 H 1.09010 * 109.46996 * 298.69734 * 4 2 1 6 6 C 1.50695 * 109.47488 * 178.70015 * 4 2 1 7 7 O 1.21290 * 119.99805 * 323.90864 * 6 4 2 8 8 N 1.34771 * 120.00612 * 143.91096 * 6 4 2 9 9 C 1.47026 * 125.64841 * 5.06613 * 8 6 4 10 10 C 1.54327 * 107.26896 * 178.85217 * 9 8 6 11 11 C 1.55157 * 103.02134 * 338.14161 * 10 9 8 12 12 H 1.09003 * 111.00650 * 277.23684 * 11 10 9 13 13 C 1.52999 * 111.04093 * 153.39293 * 11 10 9 14 14 N 1.46502 * 109.46972 * 72.78579 * 13 11 10 15 15 C 1.46501 * 120.00259 * 90.00317 * 14 13 11 16 16 C 1.36942 * 120.00175 * 270.00280 * 14 13 11 17 17 H 1.08003 * 119.99901 * 142.63951 * 16 14 13 18 18 C 1.38814 * 119.99693 * 322.64643 * 16 14 13 19 19 N 1.31625 * 119.99605 * 162.12195 * 18 16 14 20 20 Si 1.86794 * 119.99969 * 342.11996 * 18 16 14 21 21 H 1.48497 * 109.46960 * 90.45913 * 20 18 16 22 22 H 1.48501 * 109.46866 * 210.45367 * 20 18 16 23 23 H 1.48490 * 109.47407 * 330.45629 * 20 18 16 24 24 C 1.47429 * 125.65104 * 185.38022 * 8 6 4 25 25 C 1.50693 * 109.47328 * 58.69427 * 4 2 1 26 26 C 1.38670 * 120.42241 * 240.25552 * 25 4 2 27 27 C 1.38630 * 118.42248 * 180.24109 * 26 25 4 28 28 C 1.38224 * 119.16081 * 359.75644 * 27 26 25 29 29 N 1.31854 * 120.76634 * 359.97438 * 28 27 26 30 30 C 1.31882 * 121.72174 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.46863 * 300.00099 * 1 2 3 32 32 H 1.09001 * 109.46911 * 59.99962 * 1 2 3 33 33 H 1.08998 * 109.47224 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47342 * 239.99795 * 2 1 3 35 35 H 1.09002 * 109.47593 * 186.08143 * 3 2 1 36 36 H 1.08998 * 109.47237 * 306.07901 * 3 2 1 37 37 H 1.09000 * 109.47044 * 66.08310 * 3 2 1 38 38 H 1.08997 * 109.87915 * 298.40361 * 9 8 6 39 39 H 1.09000 * 109.87713 * 59.56099 * 9 8 6 40 40 H 1.09003 * 110.85412 * 219.67421 * 10 9 8 41 41 H 1.09002 * 110.66929 * 96.52241 * 10 9 8 42 42 H 1.08997 * 109.47496 * 192.78889 * 13 11 10 43 43 H 1.09000 * 109.47179 * 312.79073 * 13 11 10 44 44 H 1.08990 * 109.47321 * 85.07373 * 15 14 13 45 45 H 1.08999 * 109.47177 * 205.08339 * 15 14 13 46 46 H 1.09005 * 109.46532 * 325.07298 * 15 14 13 47 47 H 0.96996 * 119.99870 * 179.97438 * 19 18 16 48 48 H 1.08997 * 110.36302 * 322.92556 * 24 8 6 49 49 H 1.08994 * 110.36958 * 85.24971 * 24 8 6 50 50 H 1.07996 * 120.79049 * 0.02562 * 26 25 4 51 51 H 1.07999 * 120.42279 * 179.76898 * 27 26 25 52 52 H 1.08003 * 119.61898 * 180.02562 * 28 27 26 53 53 H 1.08002 * 119.62077 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6959 -0.1941 2.1391 6 6 3.5466 -0.7493 1.2333 7 8 4.1397 -0.8798 0.1833 8 7 4.2352 -0.6295 2.3856 9 6 3.6483 -0.5714 3.7324 10 6 4.8154 -0.4632 4.7364 11 6 6.0187 -1.0275 3.9358 12 1 6.0376 -2.1166 3.9746 13 6 7.3383 -0.4406 4.4410 14 7 7.6654 -1.0249 5.7441 15 6 8.4653 -2.2501 5.8175 16 6 7.2235 -0.4258 6.8935 17 1 6.9050 -1.0307 7.7296 18 6 7.1847 0.9589 6.9837 19 7 6.4528 1.5376 7.9121 20 14 8.1713 2.0007 5.7878 21 1 7.3379 2.3127 4.5990 22 1 8.5788 3.2648 6.4521 23 1 9.3814 1.2531 5.3616 24 6 5.7012 -0.5283 2.5040 25 6 1.5115 -2.1324 1.2655 26 6 0.7122 -2.5709 2.3104 27 6 0.2528 -3.8786 2.2859 28 6 0.6001 -4.6947 1.2258 29 7 1.3579 -4.2422 0.2462 30 6 1.8126 -3.0043 0.2365 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 3.1246 1.4444 -0.1089 36 1 1.5906 1.9867 -0.8305 37 1 1.7684 1.9239 0.9394 38 1 3.0013 0.3016 3.8174 39 1 3.0771 -1.4791 3.9272 40 1 4.6230 -1.0692 5.6217 41 1 4.9898 0.5766 5.0130 42 1 8.1330 -0.6687 3.7307 43 1 7.2403 0.6403 4.5418 44 1 9.5244 -1.9950 5.7844 45 1 8.2461 -2.7718 6.7491 46 1 8.2202 -2.8950 4.9737 47 1 6.4260 2.5051 7.9754 48 1 6.1864 -1.1649 1.7641 49 1 6.0211 0.5066 2.3835 50 1 0.4566 -1.9103 3.1257 51 1 -0.3687 -4.2550 3.0850 52 1 0.2459 -5.7147 1.1990 53 1 2.4312 -2.6693 -0.5830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317857255.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:53 Heat of formation + Delta-G solvation = 2.053545 kcal Electronic energy + Delta-G solvation = -31796.088461 eV Core-core repulsion = 27860.475302 eV Total energy + Delta-G solvation = -3935.613159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.96543 -40.71024 -39.23890 -37.34482 -36.93075 -33.89320 -33.58050 -32.88714 -32.37994 -30.48280 -29.04935 -28.08823 -27.96568 -26.90402 -24.65261 -24.32496 -23.41183 -23.03493 -21.68688 -21.34191 -19.97012 -18.83470 -18.44408 -18.15211 -17.31314 -17.19885 -17.00692 -16.64243 -16.24535 -15.81222 -15.64056 -15.20964 -15.15521 -14.91832 -14.70485 -14.48778 -14.34534 -14.20659 -14.00184 -13.81574 -13.66737 -13.59762 -13.49125 -13.30025 -13.15108 -13.07942 -12.87637 -12.70266 -12.49980 -12.20273 -12.16863 -11.95215 -11.90367 -11.74679 -11.67109 -11.61205 -11.24128 -11.10503 -10.66592 -10.58695 -10.41732 -9.91367 -9.71782 -8.74970 -8.13868 -5.53797 0.08409 0.31796 1.27481 1.42028 1.49766 1.50653 1.89858 2.42258 2.80694 3.08196 3.29038 3.41685 3.45871 3.65018 3.69454 3.72692 3.85141 3.92056 4.01420 4.05166 4.06709 4.18114 4.25878 4.34061 4.36073 4.44848 4.49712 4.54181 4.61947 4.65348 4.67250 4.74388 4.76438 4.77522 4.83601 4.88467 4.93263 4.96787 5.00596 5.09873 5.13259 5.14970 5.17218 5.19114 5.25346 5.32976 5.34272 5.41160 5.46062 5.74743 5.98459 6.20685 6.46473 6.99437 7.00625 7.04525 7.65743 8.08523 9.05270 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.003165 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.934028 B = 8845.784824 C = 9558.310810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 C -0.148 4.148 4 C -0.047 4.047 5 H 0.119 0.881 6 C 0.535 3.465 7 O -0.574 6.574 8 N -0.615 5.615 9 C 0.105 3.895 10 C -0.101 4.101 11 C -0.102 4.102 12 H 0.080 0.920 13 C 0.139 3.861 14 N -0.624 5.624 15 C 0.123 3.877 16 C -0.246 4.246 17 H 0.047 0.953 18 C -0.006 4.006 19 N -0.945 5.945 20 Si 0.931 3.069 21 H -0.269 1.269 22 H -0.314 1.314 23 H -0.269 1.269 24 C 0.111 3.889 25 C -0.126 4.126 26 C -0.067 4.067 27 C -0.162 4.162 28 C 0.084 3.916 29 N -0.513 5.513 30 C 0.094 3.906 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.013 0.987 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.261 0.739 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.163 0.837 51 H 0.170 0.830 52 H 0.179 0.821 53 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 -6.316 -13.348 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C -0.205 4.205 4 C -0.069 4.069 5 H 0.137 0.863 6 C 0.325 3.675 7 O -0.454 6.454 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.139 4.139 11 C -0.123 4.123 12 H 0.099 0.901 13 C 0.013 3.987 14 N -0.349 5.349 15 C -0.021 4.021 16 C -0.376 4.376 17 H 0.065 0.935 18 C -0.202 4.202 19 N -0.589 5.589 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.244 1.244 23 H -0.194 1.194 24 C -0.012 4.012 25 C -0.128 4.128 26 C -0.093 4.093 27 C -0.181 4.181 28 C -0.073 4.073 29 N -0.222 5.222 30 C -0.062 4.062 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.181 0.819 51 H 0.187 0.813 52 H 0.196 0.804 53 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.394 -6.849 -14.575 22.278 hybrid contribution 0.802 1.365 0.512 1.664 sum -14.592 -5.484 -14.063 20.994 Atomic orbital electron populations 1.21774 0.92564 1.01892 1.03163 1.20987 0.97172 0.95807 0.95321 1.21859 1.00142 0.95489 1.03058 1.20361 0.89318 0.94175 1.03028 0.86348 1.20593 0.90211 0.74959 0.81740 1.90660 1.71810 1.51471 1.31428 1.48665 1.07619 1.71617 1.06834 1.22232 0.96556 1.02816 0.80138 1.22313 0.93338 1.01167 0.97044 1.22784 0.96731 1.00468 0.92324 0.90135 1.21212 0.94475 0.96269 0.86713 1.44171 1.60304 1.29084 1.01334 1.21171 0.93170 0.87519 1.00252 1.18624 1.36145 0.89356 0.93446 0.93522 1.25810 0.98613 0.97793 0.98020 1.69914 1.41236 1.09988 1.37801 0.86154 0.80946 0.77742 0.78975 1.19674 1.24366 1.19392 1.22207 0.80863 1.00750 0.97398 1.20348 1.00299 0.95268 0.96889 1.21892 0.93696 0.96741 0.96964 1.22508 1.01210 0.94076 1.00347 1.23336 0.93103 1.01398 0.89465 1.67706 1.10936 1.15446 1.28084 1.22589 0.96796 0.89145 0.97702 0.91055 0.91407 0.93128 0.91619 0.94784 0.90828 0.91575 0.89567 0.89821 0.90828 0.92992 0.92086 0.94352 0.96910 0.93758 0.92721 0.92964 0.90870 0.92135 0.81943 0.81297 0.80433 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.93 71.98 0.64 -1.29 16 2 C -0.07 -1.42 2.02 -10.79 -0.02 -1.44 16 3 C -0.15 -2.85 8.84 71.98 0.64 -2.21 16 4 C -0.05 -0.96 1.63 -12.29 -0.02 -0.98 16 5 H 0.12 1.92 6.72 -2.38 -0.02 1.91 16 6 C 0.54 15.12 5.56 87.66 0.49 15.61 16 7 O -0.57 -19.99 15.52 -3.06 -0.05 -20.04 16 8 N -0.61 -17.57 3.33 -811.77 -2.70 -20.27 16 9 C 0.10 2.66 6.14 86.73 0.53 3.19 16 10 C -0.10 -3.41 5.73 31.78 0.18 -3.23 16 11 C -0.10 -3.43 3.26 -9.40 -0.03 -3.46 16 12 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 13 C 0.14 5.45 4.01 86.38 0.35 5.80 16 14 N -0.62 -27.55 2.50 -726.93 -1.81 -29.36 16 15 C 0.12 4.54 10.70 127.77 1.37 5.90 16 16 C -0.25 -12.95 9.27 84.03 0.78 -12.18 16 17 H 0.05 2.74 8.06 -2.91 -0.02 2.71 16 18 C -0.01 -0.31 5.38 84.86 0.46 0.15 16 19 N -0.94 -55.34 13.97 21.65 0.30 -55.04 16 20 Si 0.93 44.49 24.92 68.60 1.71 46.20 16 21 H -0.27 -12.10 6.52 99.48 0.65 -11.45 16 22 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 C 0.11 3.50 6.40 86.86 0.56 4.06 16 25 C -0.13 -2.53 3.45 -19.77 -0.07 -2.60 16 26 C -0.07 -1.01 9.81 22.47 0.22 -0.79 16 27 C -0.16 -2.20 10.11 22.36 0.23 -1.98 16 28 C 0.08 1.46 11.18 84.69 0.95 2.41 16 29 N -0.51 -12.56 10.36 -195.84 -2.03 -14.59 16 30 C 0.09 2.33 10.00 84.67 0.85 3.18 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.77 7.18 -2.39 -0.02 0.76 16 34 H 0.07 1.52 7.13 -2.39 -0.02 1.50 16 35 H 0.03 0.83 7.16 -2.39 -0.02 0.81 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.85 7.72 -2.39 -0.02 1.84 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.05 2.07 7.91 -2.39 -0.02 2.05 16 42 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 43 H 0.04 1.68 2.57 -2.39 -0.01 1.67 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.04 1.62 8.00 -2.39 -0.02 1.60 16 46 H 0.05 1.70 8.11 -2.38 -0.02 1.68 16 47 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 48 H 0.07 2.31 7.99 -2.39 -0.02 2.30 16 49 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 50 H 0.16 1.55 8.00 -2.91 -0.02 1.53 16 51 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 52 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 53 H 0.14 3.82 7.09 -2.91 -0.02 3.80 16 Total: -1.00 -68.60 413.06 4.32 -64.27 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.81 Total: 18.68 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 8.09 Total: 10.15 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.24 Total: -119.27 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.71 Total: 46.20 kcal Total: -68.60 4.32 -64.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317857255.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.328 kcal (2) G-P(sol) polarization free energy of solvation -68.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds