Wall clock time and date at job start Wed Apr 1 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47276 * 2 1 4 4 C 1.53001 * 109.47320 * 174.78112 * 3 2 1 5 5 H 1.08998 * 109.47200 * 305.67661 * 4 3 2 6 6 C 1.50698 * 109.47009 * 65.67458 * 4 3 2 7 7 O 1.21284 * 120.00004 * 31.65013 * 6 4 3 8 8 N 1.34773 * 120.00101 * 211.64990 * 6 4 3 9 9 C 1.47023 * 125.64750 * 355.22698 * 8 6 4 10 10 C 1.54324 * 107.26886 * 178.97364 * 9 8 6 11 11 C 1.55154 * 102.94711 * 337.80522 * 10 9 8 12 12 H 1.09003 * 111.00325 * 277.39261 * 11 10 9 13 13 C 1.52996 * 111.00658 * 153.57675 * 11 10 9 14 14 C 1.52997 * 109.47024 * 69.58329 * 13 11 10 15 15 N 1.46500 * 109.46988 * 180.02562 * 14 13 11 16 16 C 1.36939 * 119.99821 * 179.72221 * 15 14 13 17 17 H 1.08000 * 120.00599 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00063 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00155 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99771 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47156 * 89.99740 * 20 18 16 22 22 H 1.48501 * 109.46952 * 209.99662 * 20 18 16 23 23 H 1.48496 * 109.47072 * 329.99108 * 20 18 16 24 24 C 1.47469 * 125.62924 * 175.22240 * 8 6 4 25 25 C 1.50693 * 109.47344 * 185.67278 * 4 3 2 26 26 C 1.38225 * 119.62179 * 275.00312 * 25 4 3 27 27 C 1.38625 * 119.16369 * 179.97438 * 26 25 4 28 28 C 1.38672 * 118.42239 * 359.97438 * 27 26 25 29 29 C 1.38183 * 119.16233 * 0.02562 * 28 27 26 30 30 N 1.31854 * 119.61802 * 94.72285 * 25 4 3 31 31 H 1.09005 * 109.47079 * 60.00403 * 1 2 3 32 32 H 1.09005 * 109.47239 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47146 * 299.99936 * 1 2 3 34 34 H 1.09004 * 109.47158 * 239.99412 * 2 1 3 35 35 H 1.09002 * 109.46805 * 120.00045 * 2 1 3 36 36 H 1.08996 * 109.47341 * 54.78030 * 3 2 1 37 37 H 1.09007 * 109.46951 * 294.78301 * 3 2 1 38 38 H 1.08994 * 109.88250 * 59.55755 * 9 8 6 39 39 H 1.08998 * 110.01081 * 298.46121 * 9 8 6 40 40 H 1.09008 * 110.71942 * 219.44275 * 10 9 8 41 41 H 1.09000 * 110.87117 * 96.24248 * 10 9 8 42 42 H 1.09000 * 109.46980 * 309.58489 * 13 11 10 43 43 H 1.09001 * 109.47249 * 189.58354 * 13 11 10 44 44 H 1.09000 * 109.47111 * 60.00241 * 14 13 11 45 45 H 1.08998 * 109.47356 * 299.99634 * 14 13 11 46 46 H 0.97004 * 120.00328 * 0.02562 * 15 14 13 47 47 H 0.97006 * 120.00095 * 180.02562 * 19 18 16 48 48 H 1.09004 * 110.34996 * 85.25524 * 24 8 6 49 49 H 1.08993 * 110.41015 * 322.91810 * 24 8 6 50 50 H 1.08000 * 120.41739 * 359.97438 * 26 25 4 51 51 H 1.08004 * 120.79464 * 180.02562 * 27 26 25 52 52 H 1.08002 * 120.42189 * 180.02562 * 28 27 26 53 53 H 1.08002 * 119.61911 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5644 1.4444 0.1312 5 1 3.8540 0.8711 1.0119 6 6 4.1751 0.8208 -1.0973 7 8 3.6242 0.9329 -2.1719 8 7 5.3335 0.1385 -1.0017 9 6 6.1543 0.0094 0.2111 10 6 7.3651 -0.8777 -0.1474 11 6 6.8649 -1.6637 -1.3881 12 1 6.2698 -2.5268 -1.0900 13 6 8.0356 -2.0889 -2.2766 14 6 8.8516 -3.1685 -1.5628 15 7 9.9730 -3.5753 -2.4133 16 6 10.8503 -4.5325 -1.9782 17 1 10.7153 -4.9879 -1.0082 18 6 11.9125 -4.9183 -2.7842 19 7 12.7554 -5.8387 -2.3662 20 14 12.1456 -4.1312 -4.4622 21 1 13.0064 -2.9286 -4.3296 22 1 12.7919 -5.1038 -5.3797 23 1 10.8238 -3.7359 -5.0114 24 6 5.9871 -0.6020 -2.0968 25 6 4.0547 2.8624 0.2713 26 6 4.2806 3.6222 -0.8611 27 6 4.7311 4.9258 -0.7212 28 6 4.9380 5.4189 0.5582 29 6 4.6905 4.6002 1.6436 30 7 4.2580 3.3660 1.4728 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6024 1.9825 0.8395 37 1 1.7550 1.9286 -0.9331 38 1 5.5725 -0.4604 1.0042 39 1 6.4976 0.9917 0.5355 40 1 7.6005 -1.5582 0.6710 41 1 8.2320 -0.2675 -0.4012 42 1 8.6712 -1.2265 -2.4775 43 1 7.6528 -2.4852 -3.2171 44 1 8.2161 -4.0309 -1.3619 45 1 9.2345 -2.7723 -0.6224 46 1 10.0966 -3.1634 -3.2828 47 1 13.4980 -6.1080 -2.9293 48 1 6.6082 0.0689 -2.6903 49 1 5.2409 -1.0861 -2.7267 50 1 4.1083 3.2056 -1.8425 51 1 4.9158 5.5430 -1.5881 52 1 5.2881 6.4300 0.7046 53 1 4.8495 4.9766 2.6433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326349144.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:35 Heat of formation + Delta-G solvation = -25.222506 kcal Electronic energy + Delta-G solvation = -30180.211029 eV Core-core repulsion = 26243.415092 eV Total energy + Delta-G solvation = -3936.795937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.94542 -40.70961 -39.13192 -37.02031 -36.46940 -34.61712 -33.70701 -33.30025 -32.85453 -30.73390 -30.27507 -29.08000 -26.32351 -25.32314 -24.58880 -24.16198 -23.28207 -22.78142 -22.26573 -21.30621 -20.07969 -19.58938 -18.58365 -17.95017 -17.33141 -17.06781 -16.66527 -16.59470 -16.28907 -15.94559 -15.74004 -15.57134 -15.27519 -15.07767 -14.78840 -14.50877 -14.42822 -14.34798 -14.07997 -14.05875 -13.79037 -13.48182 -13.33344 -13.21027 -12.95761 -12.84772 -12.82806 -12.60875 -12.44964 -12.26849 -12.06729 -11.91867 -11.88574 -11.74974 -11.61731 -11.58397 -11.52638 -10.98229 -10.94774 -10.87472 -10.47834 -9.97770 -9.74736 -9.28933 -8.02878 -5.36379 0.05745 0.27723 1.38219 1.41563 1.41663 1.49167 1.83761 2.48608 2.73831 3.12722 3.28551 3.31943 3.47276 3.60952 3.69699 3.79204 3.86547 3.94398 3.98714 4.03966 4.11494 4.18588 4.20389 4.21830 4.31795 4.39467 4.43992 4.51992 4.55474 4.56987 4.65357 4.73723 4.77045 4.77901 4.80864 4.85239 4.87758 4.93329 4.96145 5.04588 5.13727 5.16608 5.19883 5.23423 5.26892 5.30864 5.35514 5.38112 5.43767 5.70710 5.76184 6.21480 6.39385 6.93593 6.99736 7.08430 7.85382 8.03635 9.18610 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002123 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.331639 B =13185.742889 C =14164.046531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.048 4.048 5 H 0.117 0.883 6 C 0.540 3.460 7 O -0.568 6.568 8 N -0.615 5.615 9 C 0.103 3.897 10 C -0.124 4.124 11 C -0.084 4.084 12 H 0.091 0.909 13 C -0.107 4.107 14 C 0.155 3.845 15 N -0.763 5.763 16 C -0.235 4.235 17 H 0.057 0.943 18 C -0.067 4.067 19 N -0.984 5.984 20 Si 0.957 3.043 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.251 1.251 24 C 0.112 3.888 25 C 0.127 3.873 26 C -0.183 4.183 27 C -0.076 4.076 28 C -0.167 4.167 29 C 0.094 3.906 30 N -0.495 5.495 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.022 0.978 45 H 0.032 0.968 46 H 0.366 0.634 47 H 0.258 0.742 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.123 0.877 51 H 0.155 0.845 52 H 0.168 0.832 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.921 25.307 8.324 35.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.129 4.129 4 C -0.070 4.070 5 H 0.134 0.866 6 C 0.328 3.672 7 O -0.447 6.447 8 N -0.348 5.348 9 C -0.020 4.020 10 C -0.162 4.162 11 C -0.104 4.104 12 H 0.110 0.890 13 C -0.145 4.145 14 C 0.029 3.971 15 N -0.408 5.408 16 C -0.366 4.366 17 H 0.075 0.925 18 C -0.259 4.259 19 N -0.635 5.635 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.175 1.175 24 C -0.011 4.011 25 C -0.011 4.011 26 C -0.203 4.203 27 C -0.102 4.102 28 C -0.186 4.186 29 C -0.063 4.063 30 N -0.204 5.204 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.050 0.950 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.141 0.859 51 H 0.172 0.828 52 H 0.185 0.815 53 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -24.383 24.744 8.649 35.799 hybrid contribution 0.898 0.354 -1.879 2.112 sum -23.485 25.097 6.771 35.032 Atomic orbital electron populations 1.21718 0.94468 1.02212 1.02096 1.21530 0.97232 0.95599 1.01749 1.21440 0.90198 0.98386 1.02830 1.20210 0.97604 0.92192 0.96987 0.86550 1.20252 0.79121 0.77510 0.90275 1.90679 1.62423 1.61059 1.30575 1.48616 1.21943 1.50774 1.13428 1.22185 0.92169 1.00579 0.87031 1.22742 0.96766 0.98217 0.98441 1.22176 0.95533 0.97372 0.95330 0.89039 1.21561 0.95857 0.98392 0.98669 1.20788 0.87597 0.95188 0.93491 1.42783 1.31190 1.47226 1.19642 1.19059 1.03784 1.12670 1.01119 0.92524 1.25561 0.97598 0.99865 1.02845 1.69890 1.18294 1.35775 1.39552 0.85376 0.78646 0.77701 0.79874 1.20295 1.22321 1.17539 1.22276 0.95623 0.93354 0.89825 1.20509 0.96554 0.94915 0.89105 1.22146 1.01795 0.96417 0.99915 1.21932 0.94389 0.94478 0.99408 1.22543 1.00558 1.02838 0.92658 1.23323 0.93449 0.88455 1.01107 1.67430 1.12681 1.15440 1.24834 0.93111 0.92092 0.91641 0.93615 0.90944 0.89905 0.91959 0.89504 0.91200 0.88586 0.90271 0.91091 0.91440 0.96002 0.95022 0.80126 0.93336 0.91333 0.91065 0.85934 0.82756 0.81459 0.79743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.34 16 2 C -0.12 -2.06 5.66 30.59 0.17 -1.89 16 3 C -0.09 -1.60 4.40 30.59 0.13 -1.46 16 4 C -0.05 -0.90 2.09 -12.29 -0.03 -0.93 16 5 H 0.12 1.94 7.02 -2.39 -0.02 1.93 16 6 C 0.54 12.46 5.08 87.66 0.45 12.91 16 7 O -0.57 -16.63 15.02 -3.04 -0.05 -16.68 16 8 N -0.61 -12.91 3.33 -811.68 -2.70 -15.61 16 9 C 0.10 1.71 6.24 86.73 0.54 2.25 16 10 C -0.12 -2.23 5.75 31.78 0.18 -2.04 16 11 C -0.08 -1.76 3.03 -9.40 -0.03 -1.78 16 12 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 13 C -0.11 -2.79 4.83 30.59 0.15 -2.64 16 14 C 0.16 5.53 6.14 86.38 0.53 6.06 16 15 N -0.76 -35.29 5.41 -343.45 -1.86 -37.15 16 16 C -0.24 -13.48 10.47 84.03 0.88 -12.60 16 17 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 19 N -0.98 -63.43 13.97 21.65 0.30 -63.13 16 20 Si 0.96 45.46 27.73 68.60 1.90 47.36 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 24 C 0.11 2.42 6.36 86.85 0.55 2.97 16 25 C 0.13 2.44 5.78 42.55 0.25 2.68 16 26 C -0.18 -3.50 9.18 22.36 0.21 -3.30 16 27 C -0.08 -1.05 10.18 22.47 0.23 -0.82 16 28 C -0.17 -1.75 10.11 22.36 0.23 -1.53 16 29 C 0.09 1.18 11.18 84.67 0.95 2.13 16 30 N -0.49 -8.87 10.27 -183.89 -1.89 -10.75 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.04 0.96 7.31 -2.39 -0.02 0.94 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.30 7.65 -2.38 -0.02 1.28 16 38 H 0.09 1.20 7.65 -2.39 -0.02 1.18 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.08 1.48 7.96 -2.39 -0.02 1.46 16 42 H 0.07 1.80 8.04 -2.39 -0.02 1.79 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.03 1.12 7.63 -2.39 -0.02 1.10 16 46 H 0.37 16.06 5.53 -92.71 -0.51 15.55 16 47 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 48 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 49 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 50 H 0.12 2.75 6.47 -2.91 -0.02 2.73 16 51 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 52 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 53 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -74.63 421.71 2.59 -72.05 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.31 Total: 28.78 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.57 Total: -4.86 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -6.14 Total: -126.64 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.05 Total: -16.68 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Total: -74.63 2.59 -72.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326349144.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.823 kcal (2) G-P(sol) polarization free energy of solvation -74.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds