Wall clock time and date at job start Wed Apr 1 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 119.99770 * 2 1 4 4 C 1.53001 * 109.46881 * 90.00399 * 3 2 1 5 5 H 1.08996 * 109.47407 * 59.99699 * 4 3 2 6 6 O 1.42909 * 109.47015 * 300.00190 * 4 3 2 7 7 C 1.53001 * 109.47308 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47335 * 185.00166 * 7 4 3 9 9 C 1.36931 * 120.00168 * 179.97438 * 8 7 4 10 10 H 1.08006 * 120.00092 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00125 * 179.97438 * 9 8 7 12 12 N 1.31611 * 120.00020 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99927 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47203 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47329 * 119.99766 * 13 11 9 16 16 H 1.48501 * 109.47187 * 239.99897 * 13 11 9 17 17 C 1.34768 * 120.00402 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00432 * 179.97438 * 17 2 1 19 19 C 1.50704 * 119.99873 * 359.97438 * 17 2 1 20 20 F 1.39897 * 110.27327 * 54.29853 * 19 17 2 21 21 C 1.54597 * 110.30768 * 292.21167 * 19 17 2 22 22 C 1.55107 * 102.84172 * 219.18563 * 21 19 17 23 23 N 1.48530 * 103.28719 * 37.30856 * 22 21 19 24 24 C 1.46899 * 110.99870 * 200.33306 * 23 22 21 25 25 C 1.53006 * 109.47111 * 172.61402 * 24 23 22 26 26 C 1.53000 * 109.47163 * 292.61475 * 24 23 22 27 27 C 1.53002 * 109.47106 * 52.61582 * 24 23 22 28 28 C 1.47908 * 105.81850 * 320.84165 * 23 22 21 29 29 H 1.09004 * 109.46422 * 269.99525 * 1 2 3 30 30 H 1.08999 * 109.46889 * 150.00046 * 1 2 3 31 31 H 1.09000 * 109.47462 * 29.99308 * 1 2 3 32 32 H 1.08998 * 109.47162 * 210.00317 * 3 2 1 33 33 H 1.09000 * 109.47066 * 330.00753 * 3 2 1 34 34 H 0.96699 * 113.99133 * 299.99544 * 6 4 3 35 35 H 1.09004 * 109.46851 * 305.00081 * 7 4 3 36 36 H 1.08997 * 109.46927 * 64.99644 * 7 4 3 37 37 H 0.96998 * 119.99435 * 359.97438 * 8 7 4 38 38 H 0.97002 * 120.00214 * 179.97438 * 12 11 9 39 39 H 1.08998 * 110.72179 * 337.48177 * 21 19 17 40 40 H 1.08997 * 110.72377 * 100.76897 * 21 19 17 41 41 H 1.09003 * 110.59140 * 278.87050 * 22 21 19 42 42 H 1.09000 * 110.82544 * 155.84743 * 22 21 19 43 43 H 1.08995 * 109.46766 * 59.99771 * 25 24 23 44 44 H 1.08998 * 109.46984 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.46819 * 299.99820 * 25 24 23 46 46 H 1.09000 * 109.46675 * 60.00073 * 26 24 23 47 47 H 1.08998 * 109.46976 * 180.02562 * 26 24 23 48 48 H 1.09008 * 109.46828 * 300.00252 * 26 24 23 49 49 H 1.08996 * 109.47350 * 52.83166 * 27 24 23 50 50 H 1.09001 * 109.47183 * 172.83313 * 27 24 23 51 51 H 1.09005 * 109.47069 * 292.82820 * 27 24 23 52 52 H 1.08991 * 109.92054 * 265.98199 * 28 23 22 53 53 H 1.09001 * 109.91847 * 144.67998 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 1.4425 5 1 3.0416 0.9508 1.9563 6 8 1.2039 1.8811 2.1163 7 6 3.2169 3.0358 1.4426 8 7 3.5655 3.3984 2.8186 9 6 4.2574 4.5534 3.0679 10 1 4.5460 5.1973 2.2501 11 6 4.5872 4.8973 4.3716 12 7 4.2343 4.1135 5.3683 13 14 5.5306 6.4733 4.7117 14 1 5.8053 7.1721 3.4306 15 1 4.7222 7.3539 5.5929 16 1 6.8148 6.1467 5.3821 17 6 2.1390 -1.1671 -0.0005 18 8 3.3517 -1.1671 -0.0010 19 6 1.3855 -2.4722 -0.0005 20 9 0.4795 -2.5089 -1.0659 21 6 0.6431 -2.6632 1.3420 22 6 0.8272 -4.1770 1.6255 23 7 2.2065 -4.4488 1.1461 24 6 2.3995 -5.8810 0.8826 25 6 3.7614 -6.0986 0.2199 26 6 2.3449 -6.6542 2.2017 27 6 1.2935 -6.3819 -0.0484 28 6 2.3665 -3.6558 -0.0922 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3634 0.8900 -0.5137 32 1 3.1499 1.1385 -0.5139 33 1 1.6083 2.0285 -0.5137 34 1 0.6268 2.5439 1.7128 35 1 4.1276 2.9300 0.8530 36 1 2.5916 3.8158 1.0085 37 1 3.3060 2.8203 3.5530 38 1 4.4651 4.3536 6.2793 39 1 1.1057 -2.0650 2.1270 40 1 -0.4130 -2.4144 1.2376 41 1 0.1014 -4.7636 1.0622 42 1 0.7429 -4.3845 2.6922 43 1 4.5493 -5.7417 0.8831 44 1 3.9048 -7.1614 0.0248 45 1 3.8003 -5.5478 -0.7199 46 1 1.3747 -6.4991 2.6737 47 1 2.4886 -7.7168 2.0062 48 1 3.1329 -6.2972 2.8650 49 1 1.2499 -5.7486 -0.9345 50 1 1.5063 -7.4087 -0.3459 51 1 0.3363 -6.3453 0.4719 52 1 2.1272 -4.2701 -0.9601 53 1 3.3890 -3.2855 -0.1665 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332567937.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:38 Heat of formation + Delta-G solvation = -126.804087 kcal Electronic energy + Delta-G solvation = -32531.985967 eV Core-core repulsion = 28160.015897 eV Total energy + Delta-G solvation = -4371.970070 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 345.221 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.26311 -41.42184 -40.35800 -38.85896 -36.54838 -35.89108 -35.76068 -33.26644 -31.45892 -30.60602 -30.17146 -28.30157 -28.03557 -27.88411 -26.96243 -25.00078 -23.55469 -22.85787 -22.58840 -20.58646 -19.82078 -19.25850 -18.84934 -18.05242 -17.68899 -17.06343 -16.89877 -16.67396 -16.40744 -16.20274 -15.98558 -15.64857 -15.40591 -15.23512 -15.11227 -14.95054 -14.82809 -14.43545 -14.30858 -14.02958 -13.76925 -13.56846 -13.54255 -13.21043 -13.09756 -12.99093 -12.91197 -12.81004 -12.80283 -12.63927 -12.60599 -12.29927 -12.16449 -12.15097 -12.06037 -12.02086 -11.85309 -11.84074 -11.55008 -11.28210 -11.01143 -10.86064 -9.67318 -9.37636 -9.03726 -7.96125 -5.26559 1.22636 1.45629 1.47653 1.57574 1.69919 2.54183 2.73151 2.93994 3.09562 3.21402 3.35033 3.47452 3.56469 3.72565 3.85950 3.93751 3.94957 4.06467 4.11947 4.15138 4.21273 4.26796 4.42393 4.46214 4.51374 4.61676 4.63189 4.64824 4.70791 4.71836 4.76442 4.81437 4.83381 4.89935 4.90978 4.92939 4.97156 4.99327 5.01682 5.18548 5.20864 5.30011 5.36848 5.43340 5.46033 5.81587 6.06072 6.15676 6.24466 6.83865 6.88855 7.30624 8.06009 8.29018 9.27641 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.002384 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.488205 B =11741.970086 C =12585.007901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.590 5.590 3 C 0.094 3.906 4 C 0.106 3.894 5 H 0.062 0.938 6 O -0.559 6.559 7 C 0.125 3.875 8 N -0.742 5.742 9 C -0.247 4.247 10 H 0.079 0.921 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.263 1.263 15 H -0.291 1.291 16 H -0.294 1.294 17 C 0.496 3.504 18 O -0.559 6.559 19 C 0.104 3.896 20 F -0.182 7.182 21 C -0.132 4.132 22 C 0.031 3.969 23 N -0.516 5.516 24 C 0.088 3.912 25 C -0.142 4.142 26 C -0.132 4.132 27 C -0.179 4.179 28 C 0.025 3.975 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.384 0.616 35 H 0.025 0.975 36 H 0.043 0.957 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.119 0.881 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.076 0.924 51 H 0.069 0.931 52 H 0.080 0.920 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.990 -22.273 -15.560 30.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.321 5.321 3 C -0.030 4.030 4 C 0.045 3.955 5 H 0.080 0.920 6 O -0.366 6.366 7 C -0.003 4.003 8 N -0.385 5.385 9 C -0.379 4.379 10 H 0.097 0.903 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.807 3.193 14 H -0.188 1.188 15 H -0.218 1.218 16 H -0.222 1.222 17 C 0.282 3.718 18 O -0.437 6.437 19 C 0.081 3.919 20 F -0.163 7.163 21 C -0.171 4.171 22 C -0.096 4.096 23 N -0.241 5.241 24 C -0.001 4.001 25 C -0.200 4.200 26 C -0.190 4.190 27 C -0.237 4.237 28 C -0.103 4.103 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.139 0.861 34 H 0.233 0.767 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.088 0.912 52 H 0.097 0.903 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.674 -22.422 -14.900 29.756 hybrid contribution 0.041 1.042 -0.220 1.066 sum -12.634 -21.380 -15.120 29.075 Atomic orbital electron populations 1.22482 0.76572 1.05891 1.03634 1.47729 1.08817 1.04687 1.70835 1.22171 0.99073 0.85631 0.96109 1.22141 0.85077 0.95467 0.92790 0.92030 1.86590 1.28602 1.63518 1.57850 1.21436 0.97070 0.94931 0.86852 1.42480 1.67225 1.25452 1.03333 1.19706 1.26730 0.98909 0.92509 0.90322 1.25668 1.03374 1.02520 0.95586 1.69862 1.53303 1.40184 0.98763 0.85009 0.77442 0.78930 0.77964 1.18751 1.21757 1.22175 1.20972 0.87865 0.86433 0.76554 1.90717 1.15169 1.87143 1.50705 1.21768 0.88890 0.93848 0.87353 1.92821 1.68208 1.96973 1.58249 1.23195 1.02218 0.98543 0.93104 1.23484 0.89738 0.93770 1.02649 1.65121 1.26144 1.07324 1.25467 1.21361 0.95883 0.86526 0.96372 1.21922 0.95659 1.02445 0.99942 1.21792 1.02287 0.99716 0.95197 1.22482 0.99235 1.02504 0.99499 1.23336 1.00042 0.92472 0.94459 0.91322 0.88816 0.88453 0.90111 0.86092 0.76718 0.95756 0.93947 0.79522 0.94005 0.90413 0.86227 0.90494 0.88310 0.93059 0.90310 0.93175 0.91997 0.90632 0.93012 0.92881 0.90476 0.91181 0.90254 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 8.69 127.77 1.11 1.97 16 2 N -0.59 -13.98 2.80 -846.74 -2.37 -16.34 16 3 C 0.09 2.38 5.14 86.38 0.44 2.82 16 4 C 0.11 3.57 3.27 30.60 0.10 3.67 16 5 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 6 O -0.56 -17.73 12.51 -148.98 -1.86 -19.59 16 7 C 0.12 4.99 5.90 86.38 0.51 5.50 16 8 N -0.74 -39.62 5.55 -343.46 -1.91 -41.53 16 9 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 10 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 11 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 12 N -0.97 -61.95 13.06 21.65 0.28 -61.67 16 13 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 14 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 16 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 17 C 0.50 14.01 6.69 87.66 0.59 14.59 16 18 O -0.56 -20.45 14.82 -3.02 -0.04 -20.49 16 19 C 0.10 2.24 1.09 -10.66 -0.01 2.23 16 20 F -0.18 -3.51 14.37 44.97 0.65 -2.87 16 21 C -0.13 -2.38 5.40 31.86 0.17 -2.21 16 22 C 0.03 0.48 5.49 86.71 0.48 0.96 16 23 N -0.52 -10.28 5.09 -833.29 -4.24 -14.53 16 24 C 0.09 1.35 0.69 3.53 0.00 1.35 16 25 C -0.14 -2.28 8.27 71.98 0.60 -1.68 16 26 C -0.13 -1.78 8.48 71.98 0.61 -1.17 16 27 C -0.18 -2.11 7.59 71.98 0.55 -1.56 16 28 C 0.03 0.56 4.56 86.45 0.39 0.96 16 29 H 0.07 1.09 7.99 -2.38 -0.02 1.07 16 30 H 0.09 1.31 4.86 -2.39 -0.01 1.30 16 31 H 0.10 1.07 7.89 -2.39 -0.02 1.05 16 32 H 0.08 2.32 7.42 -2.39 -0.02 2.30 16 33 H 0.12 2.16 7.89 -2.39 -0.02 2.14 16 34 H 0.38 8.94 9.04 -74.06 -0.67 8.27 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.37 21.88 7.67 -92.71 -0.71 21.17 16 38 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.08 1.79 7.86 -2.39 -0.02 1.77 16 40 H 0.12 1.52 7.64 -2.39 -0.02 1.50 16 41 H 0.08 0.95 5.55 -2.39 -0.01 0.94 16 42 H 0.10 1.46 7.71 -2.39 -0.02 1.44 16 43 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.05 0.85 6.77 -2.39 -0.02 0.84 16 46 H 0.06 0.75 7.15 -2.39 -0.02 0.73 16 47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.05 0.71 6.05 -2.39 -0.01 0.69 16 50 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.07 0.72 6.37 -2.38 -0.02 0.71 16 52 H 0.08 1.54 5.17 -2.39 -0.01 1.53 16 53 H 0.09 2.51 6.43 -2.39 -0.02 2.49 16 Total: -1.00 -76.64 406.57 -1.08 -77.72 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.45 Total: 40.21 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.84 Total: 9.78 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -8.23 Total: -134.07 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.91 Total: -40.09 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.65 Total: -2.87 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -76.64 -1.08 -77.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332567937.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.079 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds