Wall clock time and date at job start Wed Apr 1 2020 03:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99643 * 2 1 4 4 C 1.52998 * 109.47298 * 89.99649 * 3 2 1 5 5 H 1.09011 * 109.46965 * 60.00110 * 4 3 2 6 6 O 1.42901 * 109.47374 * 300.00139 * 4 3 2 7 7 C 1.53001 * 109.47422 * 179.97438 * 4 3 2 8 8 N 1.46496 * 109.47303 * 185.00142 * 7 4 3 9 9 C 1.36936 * 120.00030 * 179.72887 * 8 7 4 10 10 H 1.08003 * 119.99946 * 0.27606 * 9 8 7 11 11 C 1.38814 * 120.00384 * 180.27297 * 9 8 7 12 12 N 1.31623 * 119.99529 * 0.02562 * 11 9 8 13 13 Si 1.86789 * 120.00474 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47022 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47305 * 120.00416 * 13 11 9 16 16 H 1.48501 * 109.47233 * 240.00543 * 13 11 9 17 17 C 1.34778 * 120.00202 * 179.97438 * 2 1 3 18 18 O 1.21278 * 119.99612 * 184.91774 * 17 2 1 19 19 C 1.50702 * 119.99723 * 4.92380 * 17 2 1 20 20 F 1.39900 * 110.28607 * 303.55519 * 19 17 2 21 21 C 1.54258 * 110.32552 * 65.68586 * 19 17 2 22 22 C 1.54386 * 105.05860 * 118.89478 * 21 19 17 23 23 N 1.48559 * 104.59528 * 23.84935 * 22 21 19 24 24 C 1.46895 * 111.00188 * 200.95537 * 23 22 21 25 25 C 1.53008 * 109.46695 * 64.90125 * 24 23 22 26 26 C 1.52999 * 109.47138 * 184.89995 * 24 23 22 27 27 C 1.52998 * 109.47212 * 304.90626 * 24 23 22 28 28 C 1.48717 * 104.28745 * 320.57654 * 23 22 21 29 29 H 1.09009 * 109.46678 * 95.55692 * 1 2 3 30 30 H 1.08999 * 109.46875 * 215.54931 * 1 2 3 31 31 H 1.08994 * 109.47436 * 335.56024 * 1 2 3 32 32 H 1.09000 * 109.47478 * 329.99643 * 3 2 1 33 33 H 1.09006 * 109.47398 * 209.99795 * 3 2 1 34 34 H 0.96699 * 113.99521 * 299.99445 * 6 4 3 35 35 H 1.09006 * 109.46532 * 65.00463 * 7 4 3 36 36 H 1.08993 * 109.47525 * 305.00453 * 7 4 3 37 37 H 0.97000 * 120.00216 * 0.02562 * 8 7 4 38 38 H 0.97005 * 119.99923 * 179.97438 * 12 11 9 39 39 H 1.08995 * 110.32501 * 237.78822 * 21 19 17 40 40 H 1.09002 * 110.32287 * 359.90116 * 21 19 17 41 41 H 1.09000 * 110.41128 * 142.63098 * 22 21 19 42 42 H 1.09001 * 110.40836 * 265.07331 * 22 21 19 43 43 H 1.08998 * 109.46760 * 66.69114 * 25 24 23 44 44 H 1.08998 * 109.46686 * 186.69138 * 25 24 23 45 45 H 1.09000 * 109.46994 * 306.69357 * 25 24 23 46 46 H 1.08995 * 109.47216 * 60.00924 * 26 24 23 47 47 H 1.09009 * 109.46649 * 180.02562 * 26 24 23 48 48 H 1.09000 * 109.46906 * 300.00062 * 26 24 23 49 49 H 1.08999 * 109.47628 * 59.99547 * 27 24 23 50 50 H 1.09008 * 109.46789 * 179.97438 * 27 24 23 51 51 H 1.09003 * 109.47067 * 299.98895 * 27 24 23 52 52 H 1.09002 * 110.38778 * 280.63362 * 28 23 22 53 53 H 1.09002 * 110.50960 * 158.14982 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 1 3.0415 0.9508 1.9564 6 8 1.2037 1.8813 2.1161 7 6 3.2178 3.0353 1.4425 8 7 3.5662 3.3980 2.8184 9 6 4.2634 4.5500 3.0672 10 1 4.5527 5.1934 2.2494 11 6 4.5984 4.8909 4.3705 12 7 4.2463 4.1065 5.3671 13 14 5.5501 6.4619 4.7098 14 1 5.8235 7.1615 3.4287 15 1 4.7484 7.3451 5.5943 16 1 6.8347 6.1284 5.3761 17 6 2.1390 -1.1672 0.0005 18 8 3.3484 -1.1690 0.0906 19 6 1.3896 -2.4699 -0.1109 20 9 0.4402 -2.5724 0.9115 21 6 0.7063 -2.5788 -1.4896 22 6 1.3330 -3.8254 -2.1506 23 7 1.8155 -4.6497 -1.0127 24 6 2.8492 -5.5973 -1.4502 25 6 4.0831 -4.8245 -1.9208 26 6 3.2328 -6.5085 -0.2826 27 6 2.3085 -6.4456 -2.6030 28 6 2.3714 -3.6598 -0.0521 29 1 -0.3633 -0.0995 -1.0229 30 1 -0.3633 -0.8361 0.5975 31 1 -0.3634 0.9355 0.4251 32 1 1.6084 2.0284 -0.5139 33 1 3.1499 1.1385 -0.5138 34 1 0.6266 2.5440 1.7126 35 1 2.5931 3.8158 1.0080 36 1 4.1285 2.9287 0.8532 37 1 3.3067 2.8200 3.5529 38 1 4.4807 4.3445 6.2778 39 1 -0.3686 -2.7139 -1.3698 40 1 0.9115 -1.6892 -2.0851 41 1 0.5823 -4.3700 -2.7232 42 1 2.1663 -3.5373 -2.7915 43 1 4.5376 -4.3140 -1.0718 44 1 4.8025 -5.5186 -2.3552 45 1 3.7879 -4.0905 -2.6707 46 1 2.3538 -7.0591 0.0526 47 1 4.0002 -7.2114 -0.6072 48 1 3.6181 -5.9041 0.5386 49 1 2.0352 -5.7964 -3.4348 50 1 3.0757 -7.1484 -2.9279 51 1 1.4295 -6.9962 -2.2677 52 1 3.3678 -3.3464 -0.3638 53 1 2.4011 -4.0789 0.9537 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332567938.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:43 Heat of formation + Delta-G solvation = -128.205482 kcal Electronic energy + Delta-G solvation = -32417.765437 eV Core-core repulsion = 28045.734598 eV Total energy + Delta-G solvation = -4372.030839 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 345.221 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.12088 -41.48005 -40.34233 -38.88096 -36.56545 -35.92968 -35.76560 -33.28875 -31.48230 -30.54482 -30.18151 -28.35850 -28.01895 -27.89088 -26.95623 -25.00131 -23.55971 -22.96425 -22.53473 -20.59192 -19.85847 -19.27269 -18.54932 -18.07410 -17.54332 -17.36756 -16.85953 -16.56925 -16.42650 -16.38467 -15.81048 -15.74057 -15.42422 -15.21247 -15.09600 -14.95381 -14.87711 -14.53219 -14.26442 -14.03932 -13.76148 -13.58685 -13.57451 -13.26251 -13.07465 -12.99797 -12.88968 -12.81398 -12.77406 -12.62367 -12.55444 -12.28865 -12.21195 -12.17926 -12.05506 -11.99462 -11.89038 -11.85180 -11.55598 -11.29623 -11.02428 -10.82359 -9.69010 -9.48441 -9.05362 -7.97410 -5.28206 1.17175 1.44626 1.46844 1.56848 1.68915 2.53024 2.73850 2.99358 3.17537 3.24643 3.33569 3.44889 3.53099 3.69153 3.86141 3.94030 3.97919 4.10307 4.12258 4.13342 4.23322 4.28364 4.41816 4.47134 4.50845 4.54850 4.60639 4.60774 4.66243 4.72948 4.76677 4.80745 4.86869 4.88000 4.90811 4.93458 4.98054 4.99791 5.02381 5.16534 5.19626 5.29027 5.35711 5.40332 5.44704 5.72862 5.99760 6.13327 6.23006 6.80298 6.87349 7.28846 8.04410 8.27104 9.26467 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019575 B = 0.002220 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.076633 B =12611.901379 C =13220.602967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.590 5.590 3 C 0.095 3.905 4 C 0.102 3.898 5 H 0.058 0.942 6 O -0.562 6.562 7 C 0.125 3.875 8 N -0.744 5.744 9 C -0.247 4.247 10 H 0.081 0.919 11 C -0.082 4.082 12 N -0.972 5.972 13 Si 0.980 3.020 14 H -0.262 1.262 15 H -0.291 1.291 16 H -0.295 1.295 17 C 0.493 3.507 18 O -0.562 6.562 19 C 0.106 3.894 20 F -0.188 7.188 21 C -0.131 4.131 22 C 0.028 3.972 23 N -0.497 5.497 24 C 0.087 3.913 25 C -0.183 4.183 26 C -0.137 4.137 27 C -0.134 4.134 28 C 0.016 3.984 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.384 0.616 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.372 0.628 38 H 0.251 0.749 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.040 0.960 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.079 0.921 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -20.390 -23.358 33.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.320 5.320 3 C -0.028 4.028 4 C 0.041 3.959 5 H 0.076 0.924 6 O -0.369 6.369 7 C -0.002 4.002 8 N -0.386 5.386 9 C -0.378 4.378 10 H 0.099 0.901 11 C -0.274 4.274 12 N -0.623 5.623 13 Si 0.808 3.192 14 H -0.186 1.186 15 H -0.218 1.218 16 H -0.222 1.222 17 C 0.279 3.721 18 O -0.440 6.440 19 C 0.084 3.916 20 F -0.169 7.169 21 C -0.169 4.169 22 C -0.100 4.100 23 N -0.222 5.222 24 C -0.002 4.002 25 C -0.241 4.241 26 C -0.194 4.194 27 C -0.191 4.191 28 C -0.112 4.112 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.233 0.767 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.203 0.797 38 H 0.060 0.940 39 H 0.134 0.866 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.083 0.917 52 H 0.097 0.903 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.913 -21.017 -22.756 32.843 hybrid contribution 1.211 1.600 0.752 2.143 sum -9.703 -19.417 -22.003 30.908 Atomic orbital electron populations 1.22436 0.76533 1.05658 1.03799 1.47757 1.08805 1.04691 1.70735 1.22159 0.99174 0.85701 0.95785 1.22195 0.84999 0.95550 0.93150 0.92365 1.86625 1.28745 1.63495 1.58014 1.21440 0.97110 0.94824 0.86819 1.42507 1.67034 1.25682 1.03384 1.19726 1.26448 0.99074 0.92569 0.90143 1.25708 1.03418 1.02622 0.95606 1.69879 1.53305 1.40279 0.98819 0.84980 0.77390 0.78789 0.78010 1.18582 1.21822 1.22188 1.21112 0.87841 0.86538 0.76626 1.90724 1.15541 1.87381 1.50403 1.21772 0.88040 0.92860 0.88901 1.92843 1.65544 1.96565 1.61918 1.23046 1.02694 1.00165 0.91038 1.23309 1.00235 0.92836 0.93585 1.65782 1.32244 1.13149 1.10991 1.21348 0.89675 0.92918 0.96307 1.22516 0.99145 1.01258 1.01217 1.21824 1.01817 0.98985 0.96805 1.21854 1.01784 0.99412 0.96067 1.23607 0.97377 0.90629 0.99607 0.89370 0.90247 0.89030 0.85720 0.89731 0.76681 0.93789 0.95550 0.79652 0.94027 0.86585 0.88386 0.86904 0.92398 0.93648 0.90472 0.92141 0.91777 0.90801 0.94112 0.91746 0.90957 0.91650 0.90325 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 9.01 127.77 1.15 2.04 16 2 N -0.59 -13.54 2.80 -846.75 -2.37 -15.91 16 3 C 0.10 2.32 5.04 86.38 0.44 2.75 16 4 C 0.10 3.48 3.27 30.59 0.10 3.58 16 5 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 6 O -0.56 -18.60 12.10 -148.98 -1.80 -20.40 16 7 C 0.13 5.01 5.90 86.38 0.51 5.52 16 8 N -0.74 -39.93 5.55 -343.46 -1.91 -41.84 16 9 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 10 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 11 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 12 N -0.97 -62.61 13.06 21.65 0.28 -62.33 16 13 Si 0.98 47.40 29.55 68.60 2.03 49.42 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 16 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 17 C 0.49 13.53 6.59 87.66 0.58 14.11 16 18 O -0.56 -19.87 15.05 -3.02 -0.05 -19.92 16 19 C 0.11 2.33 1.17 -10.65 -0.01 2.32 16 20 F -0.19 -4.66 14.37 44.97 0.65 -4.01 16 21 C -0.13 -1.77 5.28 31.49 0.17 -1.60 16 22 C 0.03 0.35 5.00 86.45 0.43 0.78 16 23 N -0.50 -8.52 5.19 -831.72 -4.31 -12.83 16 24 C 0.09 1.27 0.71 3.53 0.00 1.27 16 25 C -0.18 -2.86 7.56 71.98 0.54 -2.31 16 26 C -0.14 -2.07 8.52 71.98 0.61 -1.45 16 27 C -0.13 -1.35 8.20 71.98 0.59 -0.76 16 28 C 0.02 0.37 4.65 86.42 0.40 0.78 16 29 H 0.09 0.80 7.56 -2.38 -0.02 0.79 16 30 H 0.08 1.43 5.36 -2.39 -0.01 1.41 16 31 H 0.09 1.28 7.01 -2.39 -0.02 1.26 16 32 H 0.12 2.04 8.07 -2.39 -0.02 2.02 16 33 H 0.08 2.26 7.50 -2.38 -0.02 2.24 16 34 H 0.38 9.19 8.80 -74.06 -0.65 8.54 16 35 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.37 22.11 7.67 -92.71 -0.71 21.40 16 38 H 0.25 15.55 8.31 -92.70 -0.77 14.78 16 39 H 0.12 1.19 8.04 -2.39 -0.02 1.17 16 40 H 0.10 1.11 7.37 -2.39 -0.02 1.10 16 41 H 0.11 0.99 7.67 -2.39 -0.02 0.97 16 42 H 0.06 0.73 5.84 -2.39 -0.01 0.72 16 43 H 0.04 0.91 6.32 -2.39 -0.02 0.89 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 0.92 6.00 -2.39 -0.01 0.91 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.04 0.74 7.24 -2.39 -0.02 0.72 16 49 H 0.06 0.55 6.85 -2.39 -0.02 0.54 16 50 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 51 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.08 2.02 4.15 -2.39 -0.01 2.01 16 53 H 0.08 2.09 7.74 -2.39 -0.02 2.07 16 Total: -1.00 -78.32 405.84 -1.10 -79.42 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.44 Total: 39.18 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.82 Total: 9.21 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -8.30 Total: -132.90 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.85 Total: -40.32 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.65 Total: -4.01 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -78.32 -1.10 -79.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332567938.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.786 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds