Wall clock time and date at job start Wed Apr 1 2020 03:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00242 * 2 1 4 4 C 1.52998 * 109.47469 * 270.00815 * 3 2 1 5 5 H 1.09003 * 109.46805 * 304.99080 * 4 3 2 6 6 O 1.42898 * 109.47577 * 64.99753 * 4 3 2 7 7 C 1.53004 * 109.47262 * 185.00030 * 4 3 2 8 8 N 1.46497 * 109.47259 * 179.97438 * 7 4 3 9 9 C 1.36936 * 120.00154 * 179.97438 * 8 7 4 10 10 H 1.08003 * 119.99785 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00175 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99562 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00012 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46847 * 90.00571 * 13 11 9 15 15 H 1.48501 * 109.47196 * 210.00152 * 13 11 9 16 16 H 1.48496 * 109.47669 * 330.00634 * 13 11 9 17 17 C 1.34783 * 120.00018 * 180.02562 * 2 1 3 18 18 O 1.21281 * 119.99745 * 180.27300 * 17 2 1 19 19 C 1.50695 * 119.99868 * 0.02562 * 17 2 1 20 20 F 1.39896 * 110.65096 * 54.29710 * 19 17 2 21 21 C 1.54598 * 110.72230 * 291.14297 * 19 17 2 22 22 C 1.53990 * 105.14344 * 219.68596 * 21 19 17 23 23 N 1.47906 * 107.05876 * 358.77686 * 22 21 19 24 24 C 1.46897 * 111.00183 * 145.84030 * 23 22 21 25 25 C 1.52998 * 109.46897 * 55.18868 * 24 23 22 26 26 C 1.53004 * 109.46869 * 175.18912 * 24 23 22 27 27 C 1.52997 * 109.47269 * 295.18816 * 24 23 22 28 28 C 1.48732 * 105.94006 * 25.20117 * 23 22 21 29 29 H 1.09000 * 109.46715 * 269.99439 * 1 2 3 30 30 H 1.08997 * 109.47357 * 29.99257 * 1 2 3 31 31 H 1.09000 * 109.46977 * 150.00206 * 1 2 3 32 32 H 1.09009 * 109.46998 * 30.00761 * 3 2 1 33 33 H 1.08997 * 109.47379 * 149.99987 * 3 2 1 34 34 H 0.96704 * 113.99939 * 59.99514 * 6 4 3 35 35 H 1.09005 * 109.46941 * 299.99253 * 7 4 3 36 36 H 1.09000 * 109.47378 * 59.99164 * 7 4 3 37 37 H 0.96998 * 119.99914 * 359.97438 * 8 7 4 38 38 H 0.97000 * 119.99495 * 179.97438 * 12 11 9 39 39 H 1.09000 * 110.30952 * 338.60873 * 21 19 17 40 40 H 1.08998 * 110.30592 * 100.77130 * 21 19 17 41 41 H 1.09000 * 109.91819 * 118.12745 * 22 21 19 42 42 H 1.09002 * 109.92010 * 239.22570 * 22 21 19 43 43 H 1.09007 * 109.47179 * 60.00113 * 25 24 23 44 44 H 1.09004 * 109.46914 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47595 * 299.99905 * 25 24 23 46 46 H 1.08991 * 109.47189 * 60.00570 * 26 24 23 47 47 H 1.09005 * 109.46703 * 180.02562 * 26 24 23 48 48 H 1.09001 * 109.46897 * 299.99728 * 26 24 23 49 49 H 1.08999 * 109.46855 * 52.85620 * 27 24 23 50 50 H 1.08998 * 109.46794 * 172.84934 * 27 24 23 51 51 H 1.08998 * 109.47423 * 292.85160 * 27 24 23 52 52 H 1.09006 * 110.83790 * 202.57580 * 28 23 22 53 53 H 1.08997 * 110.58877 * 79.38424 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4524 1.7105 -1.4424 5 1 2.9642 0.9132 -1.9815 6 8 1.2060 1.9937 -2.0813 7 6 3.3238 2.9681 -1.4442 8 7 3.5683 3.3909 -2.8254 9 6 4.3286 4.5017 -3.0771 10 1 4.7475 5.0664 -2.2573 11 6 4.5607 4.9019 -4.3859 12 7 4.0497 4.2139 -5.3849 13 14 5.5971 6.4175 -4.7291 14 1 7.0229 6.0231 -4.8594 15 1 5.1420 7.0529 -5.9918 16 1 5.4507 7.3815 -3.6091 17 6 2.1389 -1.1673 -0.0005 18 8 3.3517 -1.1672 0.0045 19 6 1.3854 -2.4723 -0.0017 20 9 0.4775 -2.5169 -1.0651 21 6 0.6597 -2.6862 1.3465 22 6 0.8290 -4.1840 1.6614 23 7 1.5807 -4.7816 0.5364 24 6 2.4642 -5.8571 1.0059 25 6 1.6425 -6.8920 1.7770 26 6 3.1326 -6.5289 -0.1954 27 6 3.5378 -5.2707 1.9248 28 6 2.3650 -3.6710 -0.0665 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0283 0.5140 33 1 3.1499 1.1383 0.5138 34 1 0.6954 2.6951 -1.6540 35 1 2.8120 3.7655 -0.9051 36 1 4.2746 2.7522 -0.9569 37 1 3.1918 2.8839 -3.5616 38 1 4.2116 4.4938 -6.2994 39 1 1.1230 -2.0810 2.1257 40 1 -0.3971 -2.4368 1.2510 41 1 1.3883 -4.3076 2.5888 42 1 -0.1487 -4.6573 1.7516 43 1 0.8777 -7.3098 1.1223 44 1 2.2981 -7.6903 2.1250 45 1 1.1663 -6.4134 2.6328 46 1 3.7180 -5.7916 -0.7447 47 1 3.7879 -7.3273 0.1530 48 1 2.3677 -6.9467 -0.8500 49 1 3.0622 -4.6845 2.7111 50 1 4.1139 -6.0801 2.3731 51 1 4.2019 -4.6298 1.3449 52 1 2.6274 -3.8979 -1.0999 53 1 3.2593 -3.4692 0.5230 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332567940.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:52 Heat of formation + Delta-G solvation = -128.554385 kcal Electronic energy + Delta-G solvation = -32363.886660 eV Core-core repulsion = 27991.840692 eV Total energy + Delta-G solvation = -4372.045968 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 345.221 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.10662 -41.41831 -40.37301 -38.88992 -36.55594 -35.89873 -35.75626 -33.27453 -31.50034 -30.59032 -30.22071 -28.33292 -28.02560 -27.89249 -26.95664 -25.01272 -23.51736 -22.90897 -22.51171 -20.65098 -19.83830 -19.26862 -18.57061 -18.07259 -17.52890 -17.26716 -16.91803 -16.56796 -16.38864 -16.35283 -16.05008 -15.72587 -15.43035 -15.12953 -15.06424 -14.88875 -14.85500 -14.51719 -14.25837 -13.94527 -13.77950 -13.74687 -13.56304 -13.25665 -13.07987 -12.99150 -12.89290 -12.82091 -12.78596 -12.61954 -12.52947 -12.32280 -12.21208 -12.15292 -12.07085 -11.97667 -11.89025 -11.84682 -11.56150 -11.31042 -11.00890 -10.82119 -9.68693 -9.40494 -9.04826 -7.96781 -5.27542 1.16904 1.44810 1.47996 1.56336 1.69543 2.53410 2.70939 3.00827 3.13636 3.22162 3.33823 3.43752 3.57408 3.70471 3.86867 3.94848 3.98064 4.05879 4.12316 4.13375 4.21371 4.27448 4.42229 4.46762 4.50856 4.58253 4.60932 4.61823 4.64229 4.72587 4.75134 4.79458 4.87087 4.87868 4.89132 4.95263 4.96776 5.00135 5.05873 5.15538 5.20954 5.30969 5.35429 5.41267 5.44738 5.77991 6.03407 6.13782 6.23496 6.80387 6.86919 7.29641 8.05298 8.28327 9.26790 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.002190 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.366564 B =12784.802532 C =13355.113412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.590 5.590 3 C 0.095 3.905 4 C 0.103 3.897 5 H 0.059 0.941 6 O -0.561 6.561 7 C 0.125 3.875 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.080 0.920 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.980 3.020 14 H -0.288 1.288 15 H -0.294 1.294 16 H -0.265 1.265 17 C 0.495 3.505 18 O -0.562 6.562 19 C 0.104 3.896 20 F -0.185 7.185 21 C -0.137 4.137 22 C 0.032 3.968 23 N -0.509 5.509 24 C 0.089 3.911 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.183 4.183 28 C 0.030 3.970 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.385 0.615 35 H 0.044 0.956 36 H 0.024 0.976 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.040 0.960 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.046 0.954 52 H 0.078 0.922 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 -21.356 22.571 33.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.320 5.320 3 C -0.029 4.029 4 C 0.042 3.958 5 H 0.077 0.923 6 O -0.368 6.368 7 C -0.003 4.003 8 N -0.385 5.385 9 C -0.380 4.380 10 H 0.097 0.903 11 C -0.272 4.272 12 N -0.622 5.622 13 Si 0.808 3.192 14 H -0.215 1.215 15 H -0.221 1.221 16 H -0.189 1.189 17 C 0.281 3.719 18 O -0.441 6.441 19 C 0.082 3.918 20 F -0.165 7.165 21 C -0.175 4.175 22 C -0.095 4.095 23 N -0.233 5.233 24 C 0.000 4.000 25 C -0.191 4.191 26 C -0.196 4.196 27 C -0.241 4.241 28 C -0.099 4.099 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.234 0.766 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.096 0.904 51 H 0.065 0.935 52 H 0.097 0.903 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.115 -21.920 21.854 32.888 hybrid contribution 1.139 1.531 -0.432 1.956 sum -9.976 -20.389 21.422 31.211 Atomic orbital electron populations 1.22476 0.76624 1.05750 1.03841 1.47787 1.08831 1.04763 1.70638 1.22156 0.99212 0.85710 0.95809 1.22190 0.84681 0.95454 0.93459 0.92301 1.86611 1.32020 1.59889 1.58308 1.21422 0.97075 0.94889 0.86870 1.42472 1.61599 1.31680 1.02763 1.19684 1.23125 1.02978 0.92208 0.90255 1.25699 1.03112 1.02914 0.95523 1.69871 1.51039 1.42891 0.98376 0.85051 0.77913 0.78978 0.77256 1.21522 1.22093 1.18911 1.21046 0.87831 0.86383 0.76646 1.90729 1.14982 1.87514 1.50851 1.21887 0.89185 0.92900 0.87877 1.92831 1.68099 1.96843 1.58745 1.23129 1.03236 0.98408 0.92758 1.23041 1.00523 0.92230 0.93707 1.65103 1.23405 1.07693 1.27124 1.21343 0.91926 0.91965 0.94793 1.21856 0.99939 0.97718 0.99622 1.21839 1.00297 1.00280 0.97147 1.22512 0.99561 1.02043 0.99985 1.23591 0.95510 0.88748 1.02008 0.89336 0.89436 0.89777 0.85851 0.89585 0.76632 0.93826 0.95800 0.79501 0.94011 0.88587 0.86545 0.91243 0.87945 0.92006 0.90894 0.91639 0.94069 0.90719 0.92097 0.91787 0.90436 0.93526 0.90323 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 9.09 127.77 1.16 2.03 16 2 N -0.59 -13.68 2.84 -846.77 -2.40 -16.09 16 3 C 0.09 2.33 5.07 86.38 0.44 2.77 16 4 C 0.10 3.52 3.30 30.59 0.10 3.62 16 5 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 6 O -0.56 -18.69 11.91 -148.98 -1.77 -20.46 16 7 C 0.12 5.03 5.92 86.38 0.51 5.54 16 8 N -0.74 -39.87 5.49 -343.44 -1.89 -41.75 16 9 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 10 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 11 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 12 N -0.97 -62.41 13.06 21.65 0.28 -62.13 16 13 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 17 C 0.50 13.56 6.71 87.65 0.59 14.14 16 18 O -0.56 -19.65 15.28 -3.03 -0.05 -19.70 16 19 C 0.10 2.27 1.05 -10.33 -0.01 2.26 16 20 F -0.18 -4.65 14.53 44.97 0.65 -4.00 16 21 C -0.14 -1.82 5.40 31.47 0.17 -1.65 16 22 C 0.03 0.40 5.10 86.44 0.44 0.84 16 23 N -0.51 -8.76 5.08 -833.11 -4.24 -13.00 16 24 C 0.09 1.27 0.69 3.53 0.00 1.27 16 25 C -0.13 -1.35 8.27 71.98 0.60 -0.76 16 26 C -0.14 -2.12 8.48 71.98 0.61 -1.51 16 27 C -0.18 -2.54 7.60 71.98 0.55 -2.00 16 28 C 0.03 0.67 4.40 86.61 0.38 1.06 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.34 7.11 -2.39 -0.02 1.33 16 31 H 0.08 1.47 4.92 -2.39 -0.01 1.46 16 32 H 0.12 2.09 8.07 -2.38 -0.02 2.07 16 33 H 0.09 2.32 7.42 -2.39 -0.02 2.30 16 34 H 0.38 9.45 9.04 -74.05 -0.67 8.78 16 35 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.37 22.10 7.54 -92.71 -0.70 21.40 16 38 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.10 1.13 7.84 -2.39 -0.02 1.12 16 40 H 0.12 1.10 7.72 -2.39 -0.02 1.08 16 41 H 0.07 0.71 5.29 -2.39 -0.01 0.70 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.55 6.77 -2.39 -0.02 0.53 16 46 H 0.04 0.75 7.16 -2.39 -0.02 0.74 16 47 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.06 0.82 6.06 -2.39 -0.01 0.81 16 50 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.05 0.83 6.37 -2.39 -0.02 0.82 16 52 H 0.08 2.05 7.74 -2.38 -0.02 2.03 16 53 H 0.08 1.89 4.80 -2.39 -0.01 1.88 16 Total: -1.00 -77.92 407.02 -0.98 -78.91 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.44 Total: 39.06 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.84 Total: 9.74 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -8.24 Total: -132.97 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -1.82 Total: -40.16 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.65 Total: -4.00 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -77.92 -0.98 -78.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332567940.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.647 kcal (2) G-P(sol) polarization free energy of solvation -77.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds