Wall clock time and date at job start Wed Apr 1 2020 04:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46886 * 2 1 4 4 N 1.46898 * 109.47340 * 120.00306 * 2 1 3 5 5 C 1.46844 * 111.00057 * 56.04505 * 4 2 1 6 6 C 1.53042 * 109.52152 * 174.16081 * 5 4 2 7 7 C 1.53118 * 109.27810 * 59.17952 * 6 5 4 8 8 C 1.53120 * 109.16093 * 302.34781 * 7 6 5 9 9 H 1.09002 * 109.50175 * 297.67137 * 8 7 6 10 10 C 1.50700 * 109.50028 * 177.59511 * 8 7 6 11 11 O 1.21277 * 120.00231 * 280.72083 * 10 8 7 12 12 N 1.34776 * 119.99983 * 100.72199 * 10 8 7 13 13 C 1.46503 * 120.00066 * 5.07393 * 12 10 8 14 14 C 1.50700 * 109.47191 * 275.14197 * 13 12 10 15 15 H 1.08000 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99910 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00105 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00440 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47214 * 89.99540 * 18 16 14 20 20 H 1.48506 * 109.47006 * 330.00318 * 18 16 14 21 21 H 1.48493 * 109.47511 * 209.99986 * 18 16 14 22 22 C 1.46500 * 120.00367 * 185.07507 * 12 10 8 23 23 C 1.50702 * 109.47157 * 270.00034 * 22 12 10 24 24 C 1.38677 * 120.41815 * 269.72140 * 23 22 12 25 25 C 1.38628 * 118.42009 * 179.78391 * 24 23 22 26 26 C 1.38227 * 119.15881 * 0.50869 * 25 24 23 27 27 N 1.31861 * 120.76513 * 359.72946 * 26 25 24 28 28 C 1.31884 * 121.72515 * 0.02562 * 27 26 25 29 29 C 1.46846 * 110.99667 * 291.83543 * 4 2 1 30 30 H 1.09005 * 109.46932 * 300.00032 * 1 2 3 31 31 H 1.08996 * 109.47421 * 59.99748 * 1 2 3 32 32 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46844 * 240.00636 * 2 1 3 34 34 H 1.08993 * 109.47050 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47296 * 300.00328 * 3 2 1 36 36 H 1.09005 * 109.46839 * 60.00286 * 3 2 1 37 37 H 1.08999 * 109.45867 * 54.14471 * 5 4 2 38 38 H 1.09003 * 109.46092 * 294.17606 * 5 4 2 39 39 H 1.08995 * 109.50279 * 299.23843 * 6 5 4 40 40 H 1.08997 * 109.49770 * 179.11926 * 6 5 4 41 41 H 1.08991 * 109.52326 * 182.43749 * 7 6 5 42 42 H 1.09004 * 109.52261 * 62.25037 * 7 6 5 43 43 H 1.09004 * 109.47174 * 155.14212 * 13 12 10 44 44 H 1.09001 * 109.47114 * 35.14068 * 13 12 10 45 45 H 0.96998 * 120.00601 * 179.97438 * 17 16 14 46 46 H 1.09000 * 109.47106 * 29.99761 * 22 12 10 47 47 H 1.09000 * 109.47696 * 149.99689 * 22 12 10 48 48 H 1.07998 * 120.78730 * 0.02562 * 24 23 22 49 49 H 1.07996 * 120.42212 * 180.21705 * 25 24 23 50 50 H 1.07997 * 119.61733 * 179.74980 * 26 25 24 51 51 H 1.07996 * 119.61675 * 180.02562 * 28 27 26 52 52 H 1.09002 * 109.46465 * 65.82785 * 29 4 2 53 53 H 1.09001 * 109.46495 * 305.85523 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4733 -2.0530 1.2815 6 6 2.1152 -2.7918 2.4581 7 6 1.8272 -2.0270 3.7529 8 6 2.3634 -0.5987 3.6229 9 1 3.4448 -0.6268 3.4882 10 6 2.0318 0.1787 4.8706 11 8 0.9172 0.6309 5.0250 12 7 2.9741 0.3715 5.8148 13 6 4.3488 -0.0771 5.5801 14 6 4.4733 -1.5317 5.9541 15 1 3.6144 -2.0682 6.3294 16 6 5.6836 -2.1775 5.8171 17 7 5.7924 -3.4468 6.1439 18 14 7.1695 -1.2496 5.1686 19 1 7.9059 -0.6386 6.3043 20 1 6.7195 -0.1823 4.2391 21 1 8.0641 -2.1897 4.4469 22 6 2.6236 1.0297 7.0758 23 6 2.8178 2.5177 6.9367 24 6 4.0371 3.0990 7.2505 25 6 4.1714 4.4708 7.1030 26 6 3.0899 5.2098 6.6614 27 7 1.9435 4.6237 6.3770 28 6 1.7812 3.3208 6.5009 29 6 1.7144 0.0765 2.4125 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6886 -2.5873 0.3561 38 1 0.3945 -2.0028 1.4291 39 1 3.1924 -2.8545 2.3044 40 1 1.6979 -3.7963 2.5282 41 1 2.3188 -2.5261 4.5878 42 1 0.7515 -1.9978 3.9272 43 1 5.0329 0.5143 6.1888 44 1 4.5976 0.0497 4.5265 45 1 6.6438 -3.9014 6.0471 46 1 1.5815 0.8204 7.3175 47 1 3.2643 0.6526 7.8729 48 1 4.8636 2.4967 7.5977 49 1 5.1077 4.9567 7.3347 50 1 3.1851 6.2796 6.5478 51 1 0.8274 2.8763 6.2580 52 1 0.6345 0.1167 2.5549 53 1 2.1049 1.0888 2.3087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361686695.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:24 Heat of formation + Delta-G solvation = -15.705248 kcal Electronic energy + Delta-G solvation = -32290.658451 eV Core-core repulsion = 28354.275213 eV Total energy + Delta-G solvation = -3936.383238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.65287 -40.92419 -39.72225 -36.97897 -36.01551 -34.73059 -33.63421 -32.79649 -31.97856 -31.14058 -29.90087 -28.27190 -27.55418 -25.42740 -24.96860 -24.55449 -24.07919 -22.96817 -21.76999 -20.24606 -19.79821 -19.03742 -18.15764 -17.93987 -17.56701 -17.06527 -16.65647 -16.59668 -16.04490 -15.98396 -15.49936 -15.44573 -15.15743 -14.96091 -14.75433 -14.54932 -14.36057 -14.30795 -14.02085 -14.00244 -13.77221 -13.61917 -13.42015 -13.23817 -12.93580 -12.84495 -12.62862 -12.56730 -12.54611 -12.27815 -12.08881 -12.01822 -11.81414 -11.68009 -11.62543 -11.46021 -11.18658 -10.87278 -10.74077 -10.56631 -10.44028 -9.95293 -9.48786 -9.19626 -8.24633 -6.30176 0.11735 0.32511 1.38950 1.43782 1.50627 1.67371 2.21221 2.36641 2.88206 3.01116 3.09486 3.52192 3.65004 3.82113 3.84027 3.89271 3.93752 3.99803 4.07026 4.09674 4.17701 4.20757 4.31581 4.38888 4.41554 4.48378 4.56296 4.60560 4.65402 4.67194 4.71651 4.72237 4.75090 4.79293 4.86829 4.87805 4.92353 4.97506 5.00001 5.07658 5.17299 5.19275 5.29444 5.32203 5.34196 5.37026 5.44510 5.47358 5.64036 5.78268 6.11885 6.21672 6.24677 6.55901 6.75181 7.00851 7.24763 7.36336 8.90786 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007081 B = 0.005286 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3953.275331 B = 5295.500378 C = 7797.968941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 C -0.148 4.148 4 N -0.540 5.540 5 C 0.060 3.940 6 C -0.107 4.107 7 C -0.095 4.095 8 C -0.093 4.093 9 H 0.091 0.909 10 C 0.524 3.476 11 O -0.583 6.583 12 N -0.589 5.589 13 C 0.219 3.781 14 C -0.527 4.527 15 H 0.039 0.961 16 C 0.029 3.971 17 N -0.936 5.936 18 Si 0.927 3.073 19 H -0.262 1.262 20 H -0.246 1.246 21 H -0.288 1.288 22 C 0.160 3.840 23 C -0.156 4.156 24 C -0.070 4.070 25 C -0.166 4.166 26 C 0.088 3.912 27 N -0.514 5.514 28 C 0.105 3.895 29 C 0.083 3.917 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.037 0.963 45 H 0.266 0.734 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.147 0.853 49 H 0.170 0.830 50 H 0.185 0.815 51 H 0.142 0.858 52 H 0.034 0.966 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 11.379 -7.899 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.032 4.032 3 C -0.205 4.205 4 N -0.265 5.265 5 C -0.068 4.068 6 C -0.145 4.145 7 C -0.134 4.134 8 C -0.115 4.115 9 H 0.109 0.891 10 C 0.313 3.687 11 O -0.465 6.465 12 N -0.317 5.317 13 C 0.098 3.902 14 C -0.565 4.565 15 H 0.057 0.943 16 C -0.170 4.170 17 N -0.576 5.576 18 Si 0.751 3.249 19 H -0.187 1.187 20 H -0.169 1.169 21 H -0.214 1.214 22 C 0.037 3.963 23 C -0.159 4.159 24 C -0.096 4.096 25 C -0.185 4.185 26 C -0.069 4.069 27 N -0.223 5.223 28 C -0.052 4.052 29 C -0.045 4.045 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.114 0.886 48 H 0.165 0.835 49 H 0.187 0.813 50 H 0.202 0.798 51 H 0.159 0.841 52 H 0.052 0.948 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.166 11.928 -8.128 15.023 hybrid contribution 0.555 -0.848 0.669 1.214 sum -3.611 11.080 -7.459 13.836 Atomic orbital electron populations 1.22440 0.97066 1.02290 1.02282 1.21808 0.93175 0.95400 0.92796 1.21934 1.01575 0.94935 1.02046 1.62145 1.59677 1.02689 1.01942 1.22125 0.96686 0.88869 0.99108 1.21502 1.01428 0.98563 0.92999 1.21315 0.99358 0.93332 0.99353 1.21208 1.02813 0.95741 0.91725 0.89102 1.20774 0.83835 0.78766 0.85363 1.90549 1.22903 1.52792 1.80229 1.47989 1.10942 1.56603 1.16211 1.19659 0.79162 0.94130 0.97274 1.21375 0.96505 0.94771 1.43855 0.94293 1.25577 1.01360 0.95266 0.94847 1.70026 1.26600 1.11594 1.49375 0.86021 0.79711 0.79431 0.79776 1.18701 1.16903 1.21375 1.20211 1.02220 0.87261 0.86617 1.21246 0.95786 0.97028 1.01845 1.21855 0.96417 0.96034 0.95311 1.22485 1.01626 0.93966 1.00423 1.23361 0.87858 1.01866 0.93852 1.67717 1.26724 1.11859 1.15954 1.22643 0.98923 0.89153 0.94473 1.21744 0.97657 0.96693 0.88432 0.94105 0.90450 0.92057 0.88424 0.92348 0.90241 0.93760 0.88831 0.94291 0.92138 0.90107 0.92896 0.92971 0.93662 0.94516 0.92454 0.90399 0.88629 0.83487 0.81272 0.79814 0.84099 0.94813 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.68 8.48 71.98 0.61 -3.07 16 2 C 0.08 1.66 3.10 44.92 0.14 1.80 16 3 C -0.15 -3.12 8.69 71.98 0.63 -2.50 16 4 N -0.54 -15.04 4.71 -871.10 -4.10 -19.15 16 5 C 0.06 1.55 4.77 86.33 0.41 1.96 16 6 C -0.11 -3.32 6.09 30.65 0.19 -3.13 16 7 C -0.10 -3.56 5.27 30.67 0.16 -3.39 16 8 C -0.09 -3.52 2.14 -11.49 -0.02 -3.54 16 9 H 0.09 3.72 5.59 -2.39 -0.01 3.70 16 10 C 0.52 21.31 6.55 87.66 0.57 21.88 16 11 O -0.58 -25.21 15.26 -3.02 -0.05 -25.25 16 12 N -0.59 -23.29 2.45 -830.49 -2.04 -25.33 16 13 C 0.22 9.19 3.87 85.63 0.33 9.52 16 14 C -0.53 -26.60 9.10 25.60 0.23 -26.37 16 15 H 0.04 2.26 7.52 -2.91 -0.02 2.24 16 16 C 0.03 1.51 5.47 84.65 0.46 1.97 16 17 N -0.94 -53.58 13.96 21.45 0.30 -53.28 16 18 Si 0.93 39.10 27.47 68.60 1.88 40.98 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 20 H -0.25 -9.57 6.54 99.48 0.65 -8.92 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 22 C 0.16 5.56 5.50 85.63 0.47 6.03 16 23 C -0.16 -4.86 5.48 -19.77 -0.11 -4.97 16 24 C -0.07 -1.81 9.86 22.47 0.22 -1.59 16 25 C -0.17 -3.49 10.11 22.36 0.23 -3.27 16 26 C 0.09 2.04 11.18 84.69 0.95 2.98 16 27 N -0.51 -15.72 10.36 -195.85 -2.03 -17.75 16 28 C 0.10 3.44 10.75 84.67 0.91 4.35 16 29 C 0.08 2.71 3.69 86.33 0.32 3.03 16 30 H 0.04 0.97 6.75 -2.38 -0.02 0.96 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.20 6.48 -2.39 -0.02 1.18 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.07 6.19 -2.38 -0.01 1.05 16 37 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 38 H 0.04 0.99 6.59 -2.39 -0.02 0.98 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.05 2.34 7.02 -2.39 -0.02 2.32 16 42 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.05 1.76 7.46 -2.39 -0.02 1.74 16 44 H 0.04 1.56 5.26 -2.39 -0.01 1.55 16 45 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.08 2.79 7.45 -2.39 -0.02 2.77 16 47 H 0.10 3.15 8.02 -2.39 -0.02 3.13 16 48 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 49 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 50 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 51 H 0.14 5.01 7.41 -2.91 -0.02 4.99 16 52 H 0.03 1.17 6.52 -2.39 -0.02 1.15 16 53 H 0.07 2.36 5.84 -2.39 -0.01 2.34 16 Total: -1.00 -63.94 406.77 1.50 -62.44 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.84 Total: 35.65 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.70 Total: 1.69 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -7.87 Total: -115.50 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.05 Total: -25.25 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.88 Total: 40.98 kcal Total: -63.94 1.50 -62.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361686695.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.737 kcal (2) G-P(sol) polarization free energy of solvation -63.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds