Wall clock time and date at job start Wed Apr 1 2020 04:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47601 * 2 1 4 4 N 1.46907 * 109.46879 * 119.99933 * 2 1 3 5 5 C 1.46841 * 110.99985 * 56.04473 * 4 2 1 6 6 C 1.53041 * 109.52243 * 174.15815 * 5 4 2 7 7 C 1.53119 * 109.27724 * 59.17994 * 6 5 4 8 8 C 1.53125 * 109.16249 * 302.34674 * 7 6 5 9 9 H 1.08999 * 109.50261 * 297.67238 * 8 7 6 10 10 C 1.50700 * 109.50538 * 177.59431 * 8 7 6 11 11 O 1.21280 * 119.99792 * 253.86023 * 10 8 7 12 12 N 1.34772 * 120.00116 * 73.85804 * 10 8 7 13 13 C 1.46505 * 119.99852 * 3.70741 * 12 10 8 14 14 C 1.50703 * 109.46638 * 84.50021 * 13 12 10 15 15 H 1.08000 * 120.00147 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00321 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99912 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47371 * 90.00204 * 18 16 14 20 20 H 1.48498 * 109.47036 * 329.99772 * 18 16 14 21 21 H 1.48504 * 109.47098 * 209.99855 * 18 16 14 22 22 C 1.46495 * 120.00408 * 183.70736 * 12 10 8 23 23 C 1.50705 * 109.47290 * 270.00584 * 22 12 10 24 24 C 1.38220 * 119.62109 * 94.99577 * 23 22 12 25 25 C 1.38624 * 119.16543 * 179.97438 * 24 23 22 26 26 C 1.38671 * 118.41575 * 0.02562 * 25 24 23 27 27 C 1.38182 * 119.16707 * 359.97438 * 26 25 24 28 28 N 1.31854 * 119.61094 * 274.71935 * 23 22 12 29 29 C 1.46842 * 110.99874 * 291.83260 * 4 2 1 30 30 H 1.08994 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47008 * 300.00151 * 1 2 3 32 32 H 1.09000 * 109.46765 * 59.99944 * 1 2 3 33 33 H 1.09001 * 109.47211 * 239.99350 * 2 1 3 34 34 H 1.08997 * 109.47578 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46798 * 300.00293 * 3 2 1 36 36 H 1.09005 * 109.46958 * 59.99189 * 3 2 1 37 37 H 1.09005 * 109.46117 * 54.14721 * 5 4 2 38 38 H 1.08994 * 109.45269 * 294.17059 * 5 4 2 39 39 H 1.08996 * 109.50438 * 299.24077 * 6 5 4 40 40 H 1.08998 * 109.50681 * 179.11814 * 6 5 4 41 41 H 1.08998 * 109.52685 * 182.43775 * 7 6 5 42 42 H 1.09005 * 109.52486 * 62.24816 * 7 6 5 43 43 H 1.09000 * 109.47338 * 324.50365 * 13 12 10 44 44 H 1.08995 * 109.47172 * 204.49399 * 13 12 10 45 45 H 0.97001 * 120.00546 * 180.02562 * 17 16 14 46 46 H 1.09009 * 109.46879 * 30.00312 * 22 12 10 47 47 H 1.08998 * 109.47653 * 149.99823 * 22 12 10 48 48 H 1.08009 * 120.41869 * 359.95817 * 24 23 22 49 49 H 1.07998 * 120.79407 * 179.97438 * 25 24 23 50 50 H 1.08002 * 120.42068 * 179.97438 * 26 25 24 51 51 H 1.07998 * 119.62264 * 179.97438 * 27 26 25 52 52 H 1.09000 * 109.46342 * 65.82421 * 29 4 2 53 53 H 1.08999 * 109.46847 * 305.85543 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4731 -2.0530 1.2817 6 6 2.1149 -2.7917 2.4583 7 6 1.8269 -2.0269 3.7531 8 6 2.3633 -0.5986 3.6231 9 1 3.4445 -0.6268 3.4885 10 6 2.0317 0.1790 4.8707 11 8 1.1560 1.0178 4.8476 12 7 2.7081 -0.0578 6.0120 13 6 3.8195 -1.0123 6.0202 14 6 5.0807 -0.3184 5.5740 15 1 5.0566 0.7286 5.3102 16 6 6.2653 -1.0203 5.5024 17 7 7.3660 -0.4148 5.1135 18 14 6.3067 -2.8315 5.9580 19 1 6.0357 -3.6521 4.7503 20 1 5.2714 -3.1071 6.9863 21 1 7.6461 -3.1752 6.4995 22 6 2.3321 0.6392 7.2445 23 6 3.1066 1.9277 7.3493 24 6 2.5390 3.1046 6.8985 25 6 3.2596 4.2844 7.0000 26 6 4.5304 4.2361 7.5531 27 6 5.0323 3.0222 7.9822 28 7 4.3158 1.9201 7.8750 29 6 1.7143 0.0766 2.4126 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6885 -2.5874 0.3563 38 1 0.3944 -2.0025 1.4293 39 1 3.1921 -2.8545 2.3047 40 1 1.6976 -3.7962 2.5286 41 1 2.3185 -2.5260 4.5881 42 1 0.7512 -1.9975 3.9273 43 1 3.5973 -1.8347 5.3403 44 1 3.9566 -1.4017 7.0290 45 1 8.1994 -0.9087 5.0628 46 1 1.2642 0.8575 7.2271 47 1 2.5597 0.0075 8.1031 48 1 1.5465 3.1050 6.4724 49 1 2.8418 5.2189 6.6557 50 1 5.1204 5.1358 7.6473 51 1 6.0212 2.9760 8.4137 52 1 0.6344 0.1169 2.5549 53 1 2.1048 1.0889 2.3088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443578864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:05 Heat of formation + Delta-G solvation = -11.680748 kcal Electronic energy + Delta-G solvation = -32480.622579 eV Core-core repulsion = 28544.413857 eV Total energy + Delta-G solvation = -3936.208722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.63368 -40.84621 -39.66686 -36.87818 -36.02624 -34.57215 -33.34574 -32.98318 -31.93548 -31.13725 -29.91362 -28.29346 -27.65906 -25.41487 -25.02591 -24.37285 -24.00458 -22.90952 -21.75593 -20.21679 -19.91336 -19.01111 -17.96570 -17.83719 -17.45946 -16.91271 -16.75928 -16.49364 -16.09863 -15.94120 -15.73684 -15.41318 -15.16295 -14.86079 -14.71073 -14.62299 -14.32936 -14.12384 -14.04015 -13.90257 -13.64674 -13.59109 -13.36029 -13.18323 -12.84012 -12.71097 -12.63536 -12.59348 -12.49077 -12.25901 -12.05438 -11.99469 -11.78205 -11.68997 -11.64582 -11.47271 -11.19001 -10.75580 -10.70513 -10.57198 -10.26292 -9.88379 -9.44802 -9.14347 -8.18975 -6.20925 0.20476 0.47192 1.40321 1.42423 1.50649 1.69767 2.23234 2.40172 2.93758 3.08972 3.15794 3.48049 3.65074 3.81440 3.84336 3.93894 4.01533 4.03624 4.13496 4.19598 4.24415 4.30721 4.31054 4.39510 4.41899 4.52719 4.54847 4.57330 4.66050 4.70221 4.74043 4.77471 4.80037 4.82489 4.88778 4.90161 4.92450 4.99619 5.01382 5.09065 5.16986 5.26558 5.27513 5.29123 5.31930 5.34478 5.46361 5.54839 5.66194 5.87070 6.16669 6.25831 6.29315 6.60640 6.79772 7.22760 7.25976 7.41328 8.98024 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008653 B = 0.004791 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.033801 B = 5842.472220 C = 7611.253517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 C -0.149 4.149 4 N -0.548 5.548 5 C 0.056 3.944 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.101 4.101 9 H 0.086 0.914 10 C 0.525 3.475 11 O -0.582 6.582 12 N -0.586 5.586 13 C 0.216 3.784 14 C -0.501 4.501 15 H 0.020 0.980 16 C 0.018 3.982 17 N -0.945 5.945 18 Si 0.931 3.069 19 H -0.260 1.260 20 H -0.242 1.242 21 H -0.291 1.291 22 C 0.166 3.834 23 C 0.098 3.902 24 C -0.165 4.165 25 C -0.085 4.085 26 C -0.171 4.171 27 C 0.078 3.922 28 N -0.482 5.482 29 C 0.091 3.909 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.039 0.961 45 H 0.262 0.738 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.136 0.864 49 H 0.162 0.838 50 H 0.163 0.837 51 H 0.158 0.842 52 H 0.039 0.961 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 0.108 -4.151 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 C -0.207 4.207 4 N -0.273 5.273 5 C -0.071 4.071 6 C -0.151 4.151 7 C -0.145 4.145 8 C -0.123 4.123 9 H 0.104 0.896 10 C 0.315 3.685 11 O -0.464 6.464 12 N -0.315 5.315 13 C 0.094 3.906 14 C -0.539 4.539 15 H 0.038 0.962 16 C -0.179 4.179 17 N -0.586 5.586 18 Si 0.754 3.246 19 H -0.184 1.184 20 H -0.165 1.165 21 H -0.217 1.217 22 C 0.043 3.957 23 C -0.041 4.041 24 C -0.185 4.185 25 C -0.111 4.111 26 C -0.191 4.191 27 C -0.080 4.080 28 N -0.191 5.191 29 C -0.037 4.037 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.154 0.846 49 H 0.180 0.820 50 H 0.181 0.819 51 H 0.175 0.825 52 H 0.057 0.943 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.996 -0.352 -3.916 13.578 hybrid contribution -0.027 0.611 0.133 0.626 sum -13.023 0.258 -3.783 13.564 Atomic orbital electron populations 1.22415 0.96566 1.02498 1.02324 1.21764 0.93489 0.94960 0.92837 1.21943 1.01129 0.95576 1.02011 1.62105 1.60105 1.03089 1.01970 1.22167 0.96986 0.88531 0.99462 1.21601 1.01488 0.99101 0.92895 1.21612 1.00820 0.92412 0.99680 1.21238 1.02676 0.96672 0.91665 0.89613 1.20783 0.80270 0.82442 0.85046 1.90539 1.34568 1.35898 1.85353 1.47898 1.32801 1.42284 1.08501 1.19809 0.83974 0.88679 0.98120 1.21178 0.92860 0.96138 1.43769 0.96175 1.25650 0.94844 1.02729 0.94688 1.70059 1.00395 1.38560 1.49580 0.85965 0.78210 0.80308 0.80085 1.18436 1.16484 1.21699 1.20318 0.97922 0.89771 0.87697 1.21735 0.91434 0.95945 0.94954 1.22157 1.02211 0.93583 1.00597 1.21904 0.94249 0.99011 0.95935 1.22419 0.96961 0.99934 0.99804 1.23049 0.99574 0.88413 0.96940 1.67465 1.05998 1.31392 1.14259 1.21590 0.97512 0.96318 0.88268 0.91576 0.93921 0.90598 0.88680 0.93272 0.90156 0.93786 0.89128 0.93750 0.92316 0.88550 0.91041 0.91229 0.92972 0.94307 0.92869 0.88007 0.88648 0.84610 0.82023 0.81895 0.82479 0.94337 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 8.47 71.98 0.61 -2.92 16 2 C 0.08 1.79 3.10 44.91 0.14 1.93 16 3 C -0.15 -3.64 8.69 71.98 0.63 -3.02 16 4 N -0.55 -15.61 4.71 -871.11 -4.10 -19.71 16 5 C 0.06 1.30 4.77 86.33 0.41 1.71 16 6 C -0.11 -2.84 6.09 30.65 0.19 -2.66 16 7 C -0.11 -3.20 5.01 30.68 0.15 -3.05 16 8 C -0.10 -3.73 1.85 -11.48 -0.02 -3.75 16 9 H 0.09 3.83 6.87 -2.39 -0.02 3.82 16 10 C 0.53 21.33 6.85 87.66 0.60 21.93 16 11 O -0.58 -24.61 15.39 -3.03 -0.05 -24.66 16 12 N -0.59 -24.06 2.45 -830.49 -2.04 -26.10 16 13 C 0.22 9.59 3.90 85.63 0.33 9.93 16 14 C -0.50 -27.45 9.16 25.60 0.23 -27.21 16 15 H 0.02 1.30 8.06 -2.91 -0.02 1.27 16 16 C 0.02 1.04 5.47 84.66 0.46 1.50 16 17 N -0.95 -58.03 13.96 21.45 0.30 -57.73 16 18 Si 0.93 41.65 27.47 68.60 1.88 43.54 16 19 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 C 0.17 6.18 5.73 85.64 0.49 6.67 16 23 C 0.10 3.88 6.36 42.55 0.27 4.16 16 24 C -0.17 -5.79 9.72 22.36 0.22 -5.58 16 25 C -0.09 -2.54 10.18 22.47 0.23 -2.31 16 26 C -0.17 -5.15 10.11 22.36 0.23 -4.92 16 27 C 0.08 2.86 11.18 84.67 0.95 3.81 16 28 N -0.48 -20.55 10.27 -183.88 -1.89 -22.44 16 29 C 0.09 3.06 3.36 86.33 0.29 3.35 16 30 H 0.07 1.18 6.48 -2.39 -0.02 1.16 16 31 H 0.04 0.98 6.75 -2.39 -0.02 0.97 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.21 6.19 -2.38 -0.01 1.20 16 37 H 0.09 1.78 8.12 -2.38 -0.02 1.76 16 38 H 0.04 0.96 6.59 -2.39 -0.02 0.94 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.18 5.81 -2.39 -0.01 2.17 16 42 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.05 2.17 4.00 -2.39 -0.01 2.16 16 44 H 0.04 1.71 6.89 -2.39 -0.02 1.70 16 45 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 46 H 0.10 3.40 7.38 -2.38 -0.02 3.38 16 47 H 0.10 3.30 7.86 -2.39 -0.02 3.28 16 48 H 0.14 4.58 7.86 -2.91 -0.02 4.56 16 49 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 50 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 51 H 0.16 5.24 8.06 -2.91 -0.02 5.22 16 52 H 0.04 1.29 6.60 -2.39 -0.02 1.27 16 53 H 0.06 2.19 5.84 -2.39 -0.01 2.17 16 Total: -1.00 -70.90 405.78 1.35 -69.55 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.84 Total: 37.99 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.41 Total: -0.44 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -7.73 Total: -125.98 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.54 kcal Total: -70.90 1.35 -69.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443578864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.872 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds