Wall clock time and date at job start Wed Apr 1 2020 04:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47058 * 2 1 4 4 N 1.46899 * 109.46975 * 119.99657 * 2 1 3 5 5 C 1.46850 * 111.00160 * 298.95339 * 4 2 1 6 6 C 1.53038 * 109.52148 * 185.83868 * 5 4 2 7 7 C 1.53121 * 109.27815 * 300.82275 * 6 5 4 8 8 C 1.53119 * 109.16340 * 57.65750 * 7 6 5 9 9 H 1.09000 * 109.50120 * 62.32088 * 8 7 6 10 10 C 1.50695 * 109.50188 * 182.40494 * 8 7 6 11 11 O 1.21287 * 120.00135 * 92.11244 * 10 8 7 12 12 N 1.34780 * 120.00149 * 272.10769 * 10 8 7 13 13 C 1.46504 * 119.99769 * 3.00778 * 12 10 8 14 14 C 1.50700 * 109.47064 * 288.79826 * 13 12 10 15 15 H 1.08001 * 119.99662 * 112.73656 * 14 13 12 16 16 C 1.37880 * 119.99889 * 292.73441 * 14 13 12 17 17 N 1.31505 * 119.99889 * 354.61972 * 16 14 13 18 18 Si 1.86802 * 119.99728 * 174.62144 * 16 14 13 19 19 H 1.48503 * 109.46824 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.46819 * 299.99859 * 18 16 14 21 21 H 1.48494 * 109.47352 * 59.99593 * 18 16 14 22 22 C 1.46491 * 120.00134 * 183.00974 * 12 10 8 23 23 C 1.50710 * 109.47191 * 277.75885 * 22 12 10 24 24 C 1.38222 * 119.61616 * 94.99972 * 23 22 12 25 25 C 1.38627 * 119.16002 * 179.97438 * 24 23 22 26 26 C 1.38673 * 118.41896 * 359.97438 * 25 24 23 27 27 C 1.38175 * 119.16540 * 0.02562 * 26 25 24 28 28 N 1.31849 * 119.61637 * 274.73093 * 23 22 12 29 29 C 1.46846 * 110.99512 * 63.21010 * 4 2 1 30 30 H 1.09004 * 109.47174 * 60.00094 * 1 2 3 31 31 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47335 * 300.00536 * 1 2 3 33 33 H 1.08995 * 109.47454 * 240.00105 * 2 1 3 34 34 H 1.08997 * 109.46748 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46797 * 299.99345 * 3 2 1 36 36 H 1.08998 * 109.47277 * 60.00107 * 3 2 1 37 37 H 1.08999 * 109.45606 * 65.82413 * 5 4 2 38 38 H 1.08996 * 109.45571 * 305.84662 * 5 4 2 39 39 H 1.09001 * 109.50141 * 180.87975 * 6 5 4 40 40 H 1.09004 * 109.53817 * 60.78168 * 6 5 4 41 41 H 1.08996 * 109.52339 * 297.74507 * 7 6 5 42 42 H 1.09002 * 109.51929 * 177.56236 * 7 6 5 43 43 H 1.08994 * 109.46994 * 168.79441 * 13 12 10 44 44 H 1.09005 * 109.46910 * 48.79491 * 13 12 10 45 45 H 0.97003 * 120.00521 * 352.69445 * 17 16 14 46 46 H 1.08999 * 109.47333 * 37.75957 * 22 12 10 47 47 H 1.09002 * 109.47477 * 157.76415 * 22 12 10 48 48 H 1.08001 * 120.42242 * 359.95649 * 24 23 22 49 49 H 1.08004 * 120.79093 * 179.97438 * 25 24 23 50 50 H 1.08007 * 120.41267 * 179.97438 * 26 25 24 51 51 H 1.07998 * 119.61688 * 179.97438 * 27 26 25 52 52 H 1.08996 * 109.49869 * 54.15744 * 29 4 2 53 53 H 1.09000 * 109.42650 * 294.18941 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.5693 -0.0122 2.4205 6 6 2.2147 -0.6720 3.6412 7 6 1.8209 -2.1511 3.6837 8 6 2.2582 -2.8253 2.3803 9 1 3.3433 -2.7738 2.2902 10 6 1.8220 -4.2677 2.3891 11 8 0.7520 -4.5806 1.9112 12 7 2.6208 -5.2102 2.9278 13 6 3.8830 -4.8243 3.5638 14 6 4.8650 -4.3881 2.5072 15 1 5.1800 -3.3563 2.4558 16 6 5.3613 -5.3062 1.6062 17 7 5.0614 -6.5803 1.7330 18 14 6.4599 -4.7401 0.2054 19 1 6.8571 -5.9115 -0.6165 20 1 5.7213 -3.7693 -0.6416 21 1 7.6739 -4.0895 0.7602 22 6 2.2270 -6.6203 2.8775 23 6 1.2663 -6.9140 4.0010 24 6 -0.0950 -6.8646 3.7662 25 6 -0.9701 -7.1369 4.8062 26 6 -0.4409 -7.4507 6.0490 27 6 0.9313 -7.4808 6.2085 28 7 1.7341 -7.2203 5.1950 29 6 1.6124 -2.1033 1.1956 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.4846 -0.0864 2.4985 38 1 1.8595 1.0376 2.3793 39 1 1.8682 -0.1769 4.5483 40 1 3.2991 -0.5861 3.5713 41 1 0.7399 -2.2372 3.7935 42 1 2.3133 -2.6350 4.5272 43 1 4.2902 -5.6757 4.1090 44 1 3.7044 -4.0013 4.2558 45 1 4.5807 -6.8898 2.5167 46 1 1.7442 -6.8289 1.9228 47 1 3.1115 -7.2486 2.9824 48 1 -0.4720 -6.6166 2.7850 49 1 -2.0387 -7.1054 4.6522 50 1 -1.0932 -7.6681 6.8819 51 1 1.3512 -7.7239 7.1733 52 1 1.9336 -2.5721 0.2656 53 1 0.5274 -2.1677 1.2788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443578867.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:10 Heat of formation + Delta-G solvation = -17.745813 kcal Electronic energy + Delta-G solvation = -32497.302054 eV Core-core repulsion = 28560.830330 eV Total energy + Delta-G solvation = -3936.471723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.62911 -40.91460 -39.67893 -37.12319 -36.01280 -34.47972 -33.41112 -32.91299 -31.94184 -31.24485 -29.30964 -28.15458 -27.39968 -25.61625 -25.07086 -24.42772 -24.29099 -23.07052 -22.01038 -20.25403 -19.96692 -18.96797 -18.10626 -17.65152 -17.39331 -16.87083 -16.65333 -16.50412 -16.00995 -15.84800 -15.64776 -15.53367 -15.07446 -15.06764 -14.94656 -14.69241 -14.38529 -14.21090 -14.17078 -13.92554 -13.80397 -13.37166 -13.34388 -12.92079 -12.91631 -12.75119 -12.67489 -12.64234 -12.37675 -12.20698 -12.07589 -11.94460 -11.71082 -11.60661 -11.44751 -11.29424 -11.18118 -10.86730 -10.66899 -10.52519 -10.40761 -9.94834 -9.29339 -9.18890 -8.57040 -6.38772 0.09537 0.34189 1.54828 1.59466 1.78754 1.79196 2.28092 2.55782 2.87761 2.99452 3.26735 3.31848 3.74255 3.76818 3.82149 3.93069 3.97639 4.01568 4.10713 4.19005 4.20204 4.21822 4.32467 4.38593 4.39917 4.47184 4.53361 4.58211 4.61853 4.65775 4.72622 4.73555 4.76644 4.79813 4.83367 4.88652 4.90257 5.03467 5.05703 5.08274 5.16828 5.19234 5.22927 5.24766 5.29906 5.38857 5.46133 5.73735 5.77082 5.92164 6.12624 6.14517 6.26274 6.60222 6.73954 7.05834 7.40187 7.43885 8.76011 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008443 B = 0.004737 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.553981 B = 5908.886626 C = 8138.376069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.071 3.929 3 C -0.136 4.136 4 N -0.539 5.539 5 C 0.053 3.947 6 C -0.107 4.107 7 C -0.097 4.097 8 C -0.103 4.103 9 H 0.110 0.890 10 C 0.519 3.481 11 O -0.600 6.600 12 N -0.579 5.579 13 C 0.229 3.771 14 C -0.614 4.614 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.920 5.920 18 Si 1.098 2.902 19 H -0.289 1.289 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.172 3.828 23 C 0.097 3.903 24 C -0.160 4.160 25 C -0.079 4.079 26 C -0.163 4.163 27 C 0.081 3.919 28 N -0.505 5.505 29 C 0.094 3.906 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.041 0.959 45 H 0.267 0.733 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.124 0.876 49 H 0.164 0.836 50 H 0.176 0.824 51 H 0.182 0.818 52 H 0.047 0.953 53 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.032 10.184 5.155 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.037 4.037 3 C -0.194 4.194 4 N -0.264 5.264 5 C -0.075 4.075 6 C -0.145 4.145 7 C -0.135 4.135 8 C -0.124 4.124 9 H 0.128 0.872 10 C 0.309 3.691 11 O -0.483 6.483 12 N -0.309 5.309 13 C 0.110 3.890 14 C -0.653 4.653 15 H 0.078 0.922 16 C -0.207 4.207 17 N -0.558 5.558 18 Si 0.921 3.079 19 H -0.215 1.215 20 H -0.205 1.205 21 H -0.190 1.190 22 C 0.047 3.953 23 C -0.041 4.041 24 C -0.181 4.181 25 C -0.105 4.105 26 C -0.182 4.182 27 C -0.076 4.076 28 N -0.215 5.215 29 C -0.034 4.034 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.142 0.858 49 H 0.181 0.819 50 H 0.193 0.807 51 H 0.199 0.801 52 H 0.066 0.934 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.328 9.484 3.705 13.809 hybrid contribution -2.270 -0.330 0.959 2.486 sum -11.598 9.155 4.664 15.494 Atomic orbital electron populations 1.22412 0.97023 1.01263 1.03169 1.21792 0.93254 0.96357 0.92343 1.21828 1.01539 0.93217 1.02772 1.62086 1.60207 1.00866 1.03211 1.22233 0.97277 0.99147 0.88807 1.21564 1.01585 0.92986 0.98334 1.21395 0.99875 0.97304 0.94917 1.21414 1.04216 0.89557 0.97246 0.87222 1.20895 0.83011 0.88947 0.76267 1.90493 1.24405 1.83770 1.49633 1.48859 1.21628 1.04568 1.55811 1.19269 0.81304 0.95467 0.92923 1.22449 1.26835 0.97364 1.18604 0.92225 1.26898 0.97556 0.93649 1.02632 1.70939 1.38913 1.16190 1.29736 0.83188 0.75560 0.75264 0.73891 1.21488 1.20468 1.18951 1.20114 0.96658 0.84438 0.94094 1.21569 0.93271 0.96052 0.93178 1.22100 0.93847 1.00671 1.01496 1.21965 1.01346 0.94883 0.92299 1.22531 0.96612 1.00241 0.98847 1.23355 0.91263 0.95276 0.97721 1.67456 1.42156 1.11683 1.00216 1.21505 0.96795 0.88680 0.96440 0.90490 0.94431 0.91795 0.91296 0.92401 0.90674 0.91521 0.94712 0.88135 0.88925 0.91344 0.93059 0.92598 0.96238 0.94081 0.91960 0.92114 0.90167 0.85821 0.81868 0.80658 0.80133 0.93449 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.51 71.98 0.61 -3.40 16 2 C 0.07 1.74 2.98 44.92 0.13 1.87 16 3 C -0.14 -2.54 8.94 71.99 0.64 -1.90 16 4 N -0.54 -16.08 4.65 -871.12 -4.05 -20.13 16 5 C 0.05 1.29 4.66 86.33 0.40 1.69 16 6 C -0.11 -2.79 6.09 30.65 0.19 -2.61 16 7 C -0.10 -3.24 5.18 30.67 0.16 -3.08 16 8 C -0.10 -4.15 1.90 -11.49 -0.02 -4.17 16 9 H 0.11 4.94 4.91 -2.39 -0.01 4.93 16 10 C 0.52 24.19 6.51 87.65 0.57 24.76 16 11 O -0.60 -29.42 14.60 -3.05 -0.04 -29.47 16 12 N -0.58 -27.71 2.44 -830.49 -2.03 -29.74 16 13 C 0.23 11.29 4.94 85.63 0.42 11.71 16 14 C -0.61 -32.15 7.43 25.60 0.19 -31.96 16 15 H 0.06 3.07 7.11 -2.91 -0.02 3.05 16 16 C 0.00 -0.23 5.41 84.66 0.46 0.23 16 17 N -0.92 -53.30 13.35 21.45 0.29 -53.02 16 18 Si 1.10 49.23 29.91 68.60 2.05 51.28 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 C 0.17 8.08 5.10 85.64 0.44 8.52 16 23 C 0.10 3.96 6.27 42.56 0.27 4.22 16 24 C -0.16 -5.72 9.14 22.36 0.20 -5.52 16 25 C -0.08 -2.08 10.18 22.47 0.23 -1.85 16 26 C -0.16 -3.72 10.11 22.36 0.23 -3.49 16 27 C 0.08 2.30 11.18 84.67 0.95 3.25 16 28 N -0.50 -19.38 10.27 -183.89 -1.89 -21.27 16 29 C 0.09 3.49 3.85 86.33 0.33 3.82 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.04 1.00 6.60 -2.39 -0.02 0.98 16 32 H 0.06 1.31 6.56 -2.38 -0.02 1.30 16 33 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.09 6.26 -2.39 -0.01 1.08 16 37 H 0.03 0.85 6.65 -2.39 -0.02 0.83 16 38 H 0.10 2.00 5.98 -2.39 -0.01 1.98 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.95 6.66 -2.39 -0.02 1.94 16 43 H 0.02 1.03 7.11 -2.39 -0.02 1.01 16 44 H 0.04 1.89 6.22 -2.38 -0.01 1.88 16 45 H 0.27 15.45 3.99 -92.71 -0.37 15.08 16 46 H 0.06 2.99 7.61 -2.39 -0.02 2.97 16 47 H 0.08 4.09 5.34 -2.39 -0.01 4.08 16 48 H 0.12 4.69 7.40 -2.91 -0.02 4.67 16 49 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 50 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 51 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 52 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 53 H 0.03 1.25 6.37 -2.39 -0.02 1.23 16 Total: -1.00 -67.35 398.94 2.02 -65.32 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 1.30 Total: 34.92 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 6.40 Total: 2.11 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -7.69 Total: -124.16 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.04 Total: -29.47 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.28 kcal Total: -67.35 2.02 -65.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443578867.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.579 kcal (2) G-P(sol) polarization free energy of solvation -67.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds