Wall clock time and date at job start Wed Apr 1 2020 04:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47094 * 2 1 4 4 H 1.09004 * 109.47059 * 57.32694 * 3 2 1 5 5 C 1.50695 * 109.47238 * 177.32100 * 3 2 1 6 6 O 1.21284 * 120.00066 * 97.85313 * 5 3 2 7 7 N 1.34774 * 120.00698 * 277.85634 * 5 3 2 8 8 C 1.46495 * 120.00628 * 179.97438 * 7 5 3 9 9 H 1.09003 * 110.64311 * 36.68160 * 8 7 5 10 10 C 1.54322 * 110.71949 * 273.54555 * 8 7 5 11 11 N 1.47022 * 107.27283 * 219.26565 * 10 8 7 12 12 C 1.36937 * 125.65051 * 178.90302 * 11 10 8 13 13 H 1.08000 * 120.00018 * 180.02562 * 12 11 10 14 14 C 1.38813 * 120.00105 * 0.29692 * 12 11 10 15 15 N 1.31625 * 119.99841 * 359.72663 * 14 12 11 16 16 Si 1.86792 * 120.00244 * 179.72204 * 14 12 11 17 17 H 1.48500 * 109.46999 * 60.00441 * 16 14 12 18 18 H 1.48504 * 109.47441 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47638 * 300.00546 * 16 14 12 20 20 C 1.47420 * 108.70408 * 359.16520 * 11 10 8 21 21 C 1.54694 * 104.93965 * 23.81092 * 20 11 10 22 22 H 1.09004 * 110.81671 * 81.31950 * 21 20 11 23 23 C 1.50704 * 111.13568 * 205.09449 * 21 20 11 24 24 C 1.38234 * 119.99982 * 52.11668 * 23 21 20 25 25 C 1.38230 * 119.99559 * 179.78824 * 24 23 21 26 26 C 1.38237 * 120.00344 * 0.45876 * 25 24 23 27 27 C 1.38234 * 120.00030 * 359.77080 * 26 25 24 28 28 C 1.38234 * 119.99763 * 0.02562 * 27 26 25 29 29 N 1.46900 * 109.47274 * 297.32463 * 3 2 1 30 30 C 1.46897 * 110.99895 * 185.00621 * 29 3 2 31 31 C 1.46897 * 110.99712 * 308.96455 * 29 3 2 32 32 H 1.09003 * 109.46755 * 305.18136 * 1 2 3 33 33 H 1.09003 * 109.46705 * 65.18433 * 1 2 3 34 34 H 1.08999 * 109.46899 * 185.18284 * 1 2 3 35 35 H 1.09000 * 109.47104 * 240.00134 * 2 1 3 36 36 H 1.09003 * 109.46935 * 119.99820 * 2 1 3 37 37 H 0.97008 * 119.99527 * 359.97438 * 7 5 3 38 38 H 1.08997 * 109.88686 * 99.84958 * 10 8 7 39 39 H 1.09007 * 110.01126 * 338.75065 * 10 8 7 40 40 H 0.96998 * 120.00112 * 179.97438 * 15 14 12 41 41 H 1.09002 * 110.36962 * 142.73661 * 20 11 10 42 42 H 1.08994 * 110.36978 * 265.06797 * 20 11 10 43 43 H 1.07997 * 119.99930 * 359.97438 * 24 23 21 44 44 H 1.08000 * 119.99986 * 180.24522 * 25 24 23 45 45 H 1.08001 * 120.00207 * 179.78650 * 26 25 24 46 46 H 1.07998 * 120.00269 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00303 * 179.97438 * 28 27 26 48 48 H 1.09001 * 109.47129 * 60.45401 * 30 29 3 49 49 H 1.08998 * 109.46937 * 180.45129 * 30 29 3 50 50 H 1.09002 * 109.47610 * 300.45539 * 30 29 3 51 51 H 1.09001 * 109.47418 * 65.09757 * 31 29 3 52 52 H 1.09008 * 109.46543 * 185.09738 * 31 29 3 53 53 H 1.08999 * 109.47235 * 305.09141 * 31 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6381 1.9700 0.8651 5 6 3.5455 1.4431 0.0664 6 8 4.1973 1.5706 -0.9485 7 7 4.1679 1.3018 1.2535 8 6 5.6314 1.3018 1.3179 9 1 6.0478 2.0056 0.5973 10 6 6.1884 -0.1175 1.0793 11 7 7.3201 -0.3027 1.9993 12 6 8.0754 -1.4389 2.1169 13 1 8.8890 -1.4755 2.8263 14 6 7.7990 -2.5416 1.3204 15 7 6.8075 -2.4970 0.4559 16 14 8.8342 -4.0887 1.4752 17 1 8.7357 -4.6135 2.8609 18 1 8.3390 -5.1133 0.5211 19 1 10.2512 -3.7693 1.1665 20 6 7.5031 0.9350 2.7789 21 6 6.1217 1.6307 2.7528 22 1 5.4567 1.1996 3.5013 23 6 6.2587 3.1186 2.9490 24 6 7.1274 3.8434 2.1546 25 6 7.2498 5.2088 2.3317 26 6 6.5106 5.8481 3.3094 27 6 5.6455 5.1226 4.1069 28 6 5.5199 3.7577 3.9271 29 7 1.6039 2.1161 -1.2304 30 6 2.1743 3.4668 -1.3217 31 6 1.9453 1.3191 -2.4162 32 1 -0.3633 0.5921 0.8400 33 1 -0.3633 0.4313 -0.9328 34 1 -0.3633 -1.0235 0.0928 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.6466 1.2001 2.0653 38 1 6.5293 -0.2135 0.0484 39 1 5.4177 -0.8602 1.2855 40 1 6.6145 -3.2674 -0.1010 41 1 7.7902 0.6991 3.8036 42 1 8.2542 1.5709 2.3104 43 1 7.7081 3.3433 1.3937 44 1 7.9255 5.7757 1.7085 45 1 6.6088 6.9144 3.4500 46 1 5.0677 5.6220 4.8705 47 1 4.8443 3.1908 4.5504 48 1 3.2623 3.4016 -1.3336 49 1 1.8289 3.9458 -2.2378 50 1 1.8550 4.0550 -0.4614 51 1 1.3827 0.3856 -2.4010 52 1 1.6935 1.8805 -3.3161 53 1 3.0131 1.1000 -2.4116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479424063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:00 Heat of formation + Delta-G solvation = 6.635722 kcal Electronic energy + Delta-G solvation = -31991.867691 eV Core-core repulsion = 28056.453231 eV Total energy + Delta-G solvation = -3935.414460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.67338 -40.58112 -38.91140 -37.61203 -35.67011 -34.50288 -33.65695 -32.59419 -31.74551 -30.30878 -28.89428 -28.44855 -28.08593 -26.38391 -24.25123 -23.84558 -23.26288 -22.81524 -21.72820 -21.37898 -20.55927 -18.98378 -18.42941 -17.78633 -17.54729 -16.86968 -16.71546 -16.24794 -16.03557 -15.89531 -15.62639 -15.52440 -15.36457 -14.95433 -14.47127 -14.26393 -14.12268 -14.01505 -13.90348 -13.86263 -13.62510 -13.31397 -13.14469 -13.01724 -12.79818 -12.71294 -12.66255 -12.63872 -12.53311 -12.40378 -12.17274 -12.01433 -11.90223 -11.87758 -11.67393 -11.65657 -11.55631 -11.22026 -10.77583 -10.09853 -9.76356 -9.53397 -9.17030 -8.97078 -7.87504 -5.26308 0.47454 0.55529 1.42694 1.46554 1.52863 1.58509 2.17349 2.46793 2.88716 2.94134 3.30236 3.48171 3.68338 3.80050 3.86322 3.93817 3.95152 4.07027 4.20114 4.21994 4.25096 4.26722 4.34072 4.48470 4.50932 4.55869 4.59226 4.62992 4.66623 4.70007 4.79651 4.83815 4.88722 4.92444 4.99991 5.07741 5.13126 5.18043 5.18907 5.23409 5.25774 5.31915 5.40604 5.51823 5.57981 5.62960 5.66911 5.70549 5.82132 5.88048 5.95273 6.11607 6.17456 6.57441 7.02584 7.28661 7.70686 8.34168 9.20937 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006544 B = 0.004938 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4277.711486 B = 5669.255223 C = 9002.669738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 C 0.075 3.925 4 H 0.131 0.869 5 C 0.483 3.517 6 O -0.577 6.577 7 N -0.700 5.700 8 C 0.149 3.851 9 H 0.065 0.935 10 C 0.194 3.806 11 N -0.624 5.624 12 C -0.245 4.245 13 H 0.087 0.913 14 C -0.065 4.065 15 N -0.951 5.951 16 Si 0.980 3.020 17 H -0.271 1.271 18 H -0.297 1.297 19 H -0.278 1.278 20 C 0.141 3.859 21 C -0.050 4.050 22 H 0.103 0.897 23 C -0.074 4.074 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.118 4.118 28 C -0.116 4.116 29 N -0.504 5.504 30 C 0.012 3.988 31 C 0.003 3.997 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.412 0.588 38 H -0.012 1.012 39 H 0.021 0.979 40 H 0.245 0.755 41 H 0.054 0.946 42 H 0.023 0.977 43 H 0.099 0.901 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.141 0.859 48 H 0.018 0.982 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.073 0.927 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.558 15.904 6.160 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C -0.037 4.037 4 H 0.149 0.851 5 C 0.269 3.731 6 O -0.457 6.457 7 N -0.351 5.351 8 C 0.042 3.958 9 H 0.083 0.917 10 C 0.068 3.932 11 N -0.350 5.350 12 C -0.374 4.374 13 H 0.105 0.895 14 C -0.258 4.258 15 N -0.599 5.599 16 Si 0.808 3.192 17 H -0.196 1.196 18 H -0.223 1.223 19 H -0.204 1.204 20 C 0.016 3.984 21 C -0.069 4.069 22 H 0.121 0.879 23 C -0.075 4.075 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.136 4.136 28 C -0.134 4.134 29 N -0.226 5.226 30 C -0.136 4.136 31 C -0.145 4.145 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.249 0.751 38 H 0.007 0.993 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.117 0.883 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.168 0.832 47 H 0.159 0.841 48 H 0.036 0.964 49 H 0.098 0.902 50 H 0.099 0.901 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.602 15.846 5.360 20.944 hybrid contribution 1.868 -1.504 -0.434 2.437 sum -10.734 14.342 4.926 18.579 Atomic orbital electron populations 1.21586 0.92070 1.01914 1.03156 1.21584 0.98967 0.92426 1.02385 1.22097 0.86513 0.98480 0.96621 0.85096 1.22656 0.92844 0.74679 0.82889 1.90624 1.68841 1.51059 1.35193 1.45950 1.06182 1.72877 1.10087 1.21908 0.80747 0.96504 0.96600 0.91735 1.21070 0.89099 0.91721 0.91343 1.44679 1.35675 1.11457 1.43209 1.19449 1.09964 0.90142 1.17838 0.89489 1.25700 1.00009 1.01587 0.98483 1.70223 1.32533 1.30244 1.26899 0.85136 0.77971 0.78657 0.77479 1.19620 1.22282 1.20446 1.21735 0.94461 0.86763 0.95480 1.21385 0.97832 0.92189 0.95528 0.87927 1.19596 0.97478 0.93409 0.96994 1.21079 0.99099 0.95200 0.99677 1.21328 1.00251 0.93777 0.99114 1.21466 0.96440 1.01083 0.95438 1.21462 0.98643 0.93664 0.99797 1.21272 0.99339 0.95455 0.97359 1.62628 1.55770 1.02909 1.01304 1.22558 0.97690 0.89795 1.03571 1.22672 1.00437 0.98655 0.92730 0.91085 0.91962 0.92301 0.93179 0.90991 0.75137 0.99334 0.96090 0.94606 0.92734 0.95941 0.88295 0.85040 0.83640 0.83189 0.84132 0.96368 0.90238 0.90082 0.90780 0.90853 0.94913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.62 71.98 0.69 -1.63 16 2 C -0.12 -2.76 4.90 30.60 0.15 -2.61 16 3 C 0.08 1.86 2.35 44.17 0.10 1.96 16 4 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 5 C 0.48 16.21 6.13 87.66 0.54 16.74 16 6 O -0.58 -24.75 11.81 -3.04 -0.04 -24.79 16 7 N -0.70 -22.34 5.14 -436.93 -2.24 -24.58 16 8 C 0.15 5.85 2.65 46.18 0.12 5.97 16 9 H 0.06 2.84 6.77 -2.39 -0.02 2.82 16 10 C 0.19 10.11 5.12 86.73 0.44 10.55 16 11 N -0.62 -32.72 3.40 -692.44 -2.35 -35.07 16 12 C -0.25 -13.96 10.28 84.03 0.86 -13.10 16 13 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 14 C -0.06 -3.77 5.49 84.86 0.47 -3.31 16 15 N -0.95 -59.36 10.31 21.65 0.22 -59.14 16 16 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 C 0.14 5.78 6.64 86.78 0.58 6.36 16 21 C -0.05 -1.64 2.86 -10.22 -0.03 -1.67 16 22 H 0.10 3.04 7.84 -2.38 -0.02 3.02 16 23 C -0.07 -2.07 5.00 -19.86 -0.10 -2.17 16 24 C -0.13 -3.86 8.31 22.27 0.19 -3.68 16 25 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 26 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 27 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 28 C -0.12 -2.51 9.69 22.27 0.22 -2.29 16 29 N -0.50 -12.53 4.53 -927.74 -4.20 -16.74 16 30 C 0.01 0.29 9.16 127.69 1.17 1.46 16 31 C 0.00 0.08 8.51 127.69 1.09 1.17 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.16 7.40 -2.39 -0.02 1.14 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.44 6.26 -2.39 -0.01 1.43 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.41 10.12 8.53 -92.70 -0.79 9.33 16 38 H -0.01 -0.73 7.50 -2.39 -0.02 -0.75 16 39 H 0.02 1.20 7.27 -2.38 -0.02 1.18 16 40 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 42 H 0.02 0.95 6.63 -2.39 -0.02 0.93 16 43 H 0.10 3.29 7.02 -2.91 -0.02 3.27 16 44 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.14 2.38 7.99 -2.91 -0.02 2.35 16 48 H 0.02 0.56 5.79 -2.39 -0.01 0.55 16 49 H 0.08 1.69 8.07 -2.39 -0.02 1.67 16 50 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.07 1.89 6.01 -2.39 -0.01 1.87 16 52 H 0.07 1.78 8.04 -2.38 -0.02 1.76 16 53 H 0.03 1.18 5.39 -2.39 -0.01 1.16 16 Total: -1.00 -75.96 408.57 0.68 -75.28 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.11 Total: 29.43 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 7.16 Total: 6.94 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -8.58 Total: -135.53 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.04 Total: -24.79 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -75.96 0.68 -75.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479424063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.920 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds