Wall clock time and date at job start Wed Apr 1 2020 04:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47075 * 2 1 4 4 N 1.46904 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.46894 * 111.00120 * 66.03995 * 4 3 2 6 6 C 1.46900 * 110.99901 * 190.00162 * 4 3 2 7 7 C 1.50692 * 109.47189 * 169.99751 * 6 4 3 8 8 O 1.21285 * 119.99915 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00240 * 179.97438 * 7 6 4 10 10 C 1.46497 * 120.00365 * 180.02562 * 9 7 6 11 11 H 1.09010 * 110.77931 * 31.75843 * 10 9 7 12 12 C 1.54319 * 110.71911 * 268.52308 * 10 9 7 13 13 N 1.47027 * 107.26796 * 219.44250 * 12 10 9 14 14 C 1.36936 * 125.64445 * 178.90299 * 13 12 10 15 15 H 1.07999 * 119.99652 * 180.02562 * 14 13 12 16 16 C 1.38813 * 120.00335 * 0.03865 * 14 13 12 17 17 N 1.31614 * 120.00014 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47302 * 60.00087 * 18 16 14 20 20 H 1.48494 * 109.47140 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47158 * 300.00169 * 18 16 14 22 22 C 1.47418 * 108.70583 * 358.93948 * 13 12 10 23 23 C 1.54912 * 104.83162 * 24.12710 * 22 13 12 24 24 H 1.09000 * 111.00334 * 81.10069 * 23 22 13 25 25 C 1.50700 * 111.00593 * 204.91783 * 23 22 13 26 26 C 1.38234 * 120.00260 * 238.54724 * 25 23 22 27 27 C 1.38234 * 120.00240 * 179.97438 * 26 25 23 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38239 * 119.99756 * 359.45918 * 28 27 26 30 30 C 1.38234 * 119.99992 * 0.53603 * 29 28 27 31 31 H 1.09002 * 109.47430 * 299.99820 * 1 2 3 32 32 H 1.08998 * 109.47161 * 60.00516 * 1 2 3 33 33 H 1.09005 * 109.46962 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47430 * 240.00180 * 2 1 3 35 35 H 1.08995 * 109.47473 * 119.99906 * 2 1 3 36 36 H 1.08992 * 109.46892 * 59.99885 * 3 2 1 37 37 H 1.08998 * 109.46705 * 299.99764 * 3 2 1 38 38 H 1.08999 * 109.47339 * 183.95150 * 5 4 3 39 39 H 1.08998 * 109.47856 * 303.96027 * 5 4 3 40 40 H 1.09003 * 109.46800 * 63.95796 * 5 4 3 41 41 H 1.09003 * 109.47016 * 49.99066 * 6 4 3 42 42 H 1.09006 * 109.46604 * 289.99536 * 6 4 3 43 43 H 0.96999 * 119.99588 * 359.97438 * 9 7 6 44 44 H 1.09002 * 109.88505 * 100.02432 * 12 10 9 45 45 H 1.08998 * 110.01267 * 338.92976 * 12 10 9 46 46 H 0.96996 * 120.00496 * 179.97438 * 17 16 14 47 47 H 1.09002 * 110.36827 * 265.29178 * 22 13 12 48 48 H 1.08998 * 110.46106 * 143.01570 * 22 13 12 49 49 H 1.07999 * 119.99751 * 359.97438 * 26 25 23 50 50 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 52 52 H 1.08000 * 119.99962 * 180.30225 * 29 28 27 53 53 H 1.08002 * 120.00264 * 179.76377 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0349 0.8859 -1.2541 6 6 4.0355 2.7932 0.2375 7 6 5.5218 2.7184 0.4743 8 8 6.0869 1.6455 0.4477 9 7 6.2233 3.8436 0.7155 10 6 7.6684 3.7710 0.9452 11 1 8.1092 2.9504 0.3789 12 6 7.9753 3.6226 2.4502 13 7 9.1557 4.4503 2.7386 14 6 9.7377 4.6094 3.9679 15 1 10.6060 5.2425 4.0763 16 6 9.2120 3.9568 5.0745 17 7 8.1544 3.1847 4.9422 18 14 10.0065 4.1734 6.7512 19 1 9.9749 5.6082 7.1324 20 1 9.2614 3.3765 7.7586 21 1 11.4153 3.7070 6.6954 22 6 9.6083 5.0813 1.4855 23 6 8.3502 5.1167 0.5824 24 1 7.7098 5.9610 0.8376 25 6 8.7322 5.1531 -0.8749 26 6 8.3119 6.2002 -1.6737 27 6 8.6628 6.2339 -3.0103 28 6 9.4293 5.2177 -3.5496 29 6 9.8544 4.1736 -2.7495 30 6 9.5036 4.1400 -1.4128 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 5.1223 0.8326 -1.2001 39 1 3.6293 -0.1143 -1.4060 40 1 3.7436 1.5264 -2.0866 41 1 3.5492 3.2235 1.1130 42 1 3.8372 3.4190 -0.6326 43 1 5.7715 4.7017 0.7364 44 1 8.1878 2.5794 2.6842 45 1 7.1266 3.9691 3.0399 46 1 7.7872 2.7284 5.7154 47 1 10.3920 4.4828 1.0209 48 1 9.9671 6.0927 1.6761 49 1 7.7095 6.9919 -1.2534 50 1 8.3340 7.0517 -3.6344 51 1 9.6997 5.2418 -4.5949 52 1 10.4574 3.3822 -3.1696 53 1 9.8325 3.3223 -0.7886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479425601.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:24 Heat of formation + Delta-G solvation = 0.877857 kcal Electronic energy + Delta-G solvation = -30895.962003 eV Core-core repulsion = 26960.297862 eV Total energy + Delta-G solvation = -3935.664140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.28695 -40.29124 -38.84791 -38.04004 -35.55164 -34.27949 -34.03453 -32.57475 -31.73759 -30.47705 -29.00151 -28.41891 -27.84843 -26.36531 -24.32493 -23.77981 -23.03562 -22.22086 -21.63126 -21.34862 -20.87241 -18.95236 -18.25981 -17.67018 -17.34000 -16.91700 -16.72650 -16.42652 -16.03951 -15.84120 -15.66316 -15.44964 -15.36378 -14.89515 -14.74416 -14.30595 -14.16126 -14.06923 -13.87796 -13.80842 -13.66128 -13.60313 -13.07333 -12.99955 -12.83561 -12.71475 -12.69537 -12.54968 -12.52832 -12.31207 -12.15052 -12.01610 -11.93991 -11.87627 -11.62516 -11.52300 -11.44462 -10.78205 -10.69963 -10.04759 -9.75466 -9.49839 -9.23573 -8.94405 -7.84680 -5.23602 0.48708 0.56412 1.44434 1.48478 1.54894 1.72768 2.10690 2.48683 2.90041 3.03861 3.32807 3.51480 3.74482 3.83724 3.96275 3.99010 3.99897 4.14139 4.21068 4.24267 4.29412 4.31510 4.32516 4.36622 4.49679 4.54001 4.55987 4.57118 4.59363 4.70081 4.71713 4.80774 4.84424 4.89789 4.91578 5.10158 5.14740 5.19557 5.22836 5.25073 5.31484 5.33064 5.43175 5.44662 5.61717 5.63926 5.67659 5.73643 5.84701 5.96783 6.14260 6.15471 6.18609 6.68129 7.05343 7.39665 7.73419 8.37020 9.23678 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006515 B = 0.003809 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4296.793307 B = 7349.012393 C =11042.951105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.058 3.942 4 N -0.552 5.552 5 C 0.024 3.976 6 C 0.047 3.953 7 C 0.507 3.493 8 O -0.570 6.570 9 N -0.704 5.704 10 C 0.149 3.851 11 H 0.070 0.930 12 C 0.190 3.810 13 N -0.624 5.624 14 C -0.245 4.245 15 H 0.087 0.913 16 C -0.066 4.066 17 N -0.950 5.950 18 Si 0.981 3.019 19 H -0.271 1.271 20 H -0.297 1.297 21 H -0.279 1.279 22 C 0.142 3.858 23 C -0.050 4.050 24 H 0.104 0.896 25 C -0.073 4.073 26 C -0.117 4.117 27 C -0.119 4.119 28 C -0.127 4.127 29 C -0.127 4.127 30 C -0.132 4.132 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.413 0.587 44 H -0.011 1.011 45 H 0.023 0.977 46 H 0.245 0.755 47 H 0.021 0.979 48 H 0.055 0.945 49 H 0.141 0.859 50 H 0.150 0.850 51 H 0.146 0.854 52 H 0.132 0.868 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 5.091 -19.422 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.069 4.069 4 N -0.277 5.277 5 C -0.124 4.124 6 C -0.084 4.084 7 C 0.294 3.706 8 O -0.448 6.448 9 N -0.357 5.357 10 C 0.043 3.957 11 H 0.088 0.912 12 C 0.064 3.936 13 N -0.350 5.350 14 C -0.373 4.373 15 H 0.105 0.895 16 C -0.259 4.259 17 N -0.599 5.599 18 Si 0.808 3.192 19 H -0.197 1.197 20 H -0.223 1.223 21 H -0.205 1.205 22 C 0.017 3.983 23 C -0.070 4.070 24 H 0.122 0.878 25 C -0.074 4.074 26 C -0.135 4.135 27 C -0.137 4.137 28 C -0.145 4.145 29 C -0.145 4.145 30 C -0.150 4.150 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.137 0.863 42 H 0.110 0.890 43 H 0.249 0.751 44 H 0.008 0.992 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.039 0.961 48 H 0.073 0.927 49 H 0.158 0.842 50 H 0.168 0.832 51 H 0.163 0.837 52 H 0.149 0.851 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.019 3.957 -18.848 22.188 hybrid contribution 0.319 0.206 0.976 1.047 sum -10.700 4.163 -17.872 21.242 Atomic orbital electron populations 1.21693 0.93997 1.02270 1.02310 1.21530 0.96558 0.95894 1.01972 1.22251 0.84864 0.98078 1.01717 1.61537 1.08813 1.20701 1.36646 1.22462 1.01032 1.00133 0.88729 1.21964 0.90156 0.91811 1.04464 1.21227 0.90561 0.83416 0.75399 1.90658 1.72453 1.29900 1.51798 1.45715 1.07746 1.10133 1.72066 1.21923 0.80890 0.97365 0.95567 0.91191 1.21120 0.89299 0.92524 0.90677 1.44680 1.32237 1.54060 1.04034 1.19445 1.09379 1.24097 0.84418 0.89483 1.25715 0.98819 0.99525 1.01871 1.70218 1.25441 1.34822 1.29396 0.85126 0.77432 0.77741 0.78870 1.19652 1.22300 1.20471 1.21752 0.94301 0.96701 0.85559 1.21440 0.97179 0.96875 0.91477 0.87834 1.19610 0.98185 0.95730 0.93846 1.21272 1.00313 0.97674 0.94240 1.21459 0.97941 0.99266 0.94988 1.21459 0.98210 0.94096 1.00732 1.21330 1.00347 0.99588 0.93216 1.21084 0.99146 0.98567 0.96242 0.92351 0.91911 0.92140 0.92033 0.92878 0.90128 0.93266 0.92535 0.90678 0.94648 0.86278 0.89048 0.75073 0.99245 0.95904 0.94584 0.96103 0.92677 0.84154 0.83231 0.83661 0.85053 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.91 71.98 0.71 -1.22 16 2 C -0.12 -2.20 5.87 30.60 0.18 -2.02 16 3 C 0.06 1.08 4.96 86.31 0.43 1.51 16 4 N -0.55 -14.23 4.50 -927.06 -4.17 -18.40 16 5 C 0.02 0.61 9.01 127.69 1.15 1.76 16 6 C 0.05 1.12 5.45 85.55 0.47 1.58 16 7 C 0.51 17.26 7.55 87.65 0.66 17.93 16 8 O -0.57 -25.22 13.96 -3.04 -0.04 -25.26 16 9 N -0.70 -22.60 5.10 -436.92 -2.23 -24.83 16 10 C 0.15 5.89 2.72 46.18 0.13 6.02 16 11 H 0.07 3.09 6.18 -2.38 -0.01 3.07 16 12 C 0.19 9.96 5.13 86.73 0.44 10.41 16 13 N -0.62 -32.83 3.39 -692.00 -2.35 -35.18 16 14 C -0.24 -13.97 10.28 84.03 0.86 -13.11 16 15 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 16 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 17 N -0.95 -59.68 10.31 21.65 0.22 -59.46 16 18 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 C 0.14 5.86 6.65 86.86 0.58 6.44 16 23 C -0.05 -1.66 2.89 -10.15 -0.03 -1.69 16 24 H 0.10 3.06 7.83 -2.39 -0.02 3.04 16 25 C -0.07 -2.07 5.00 -19.86 -0.10 -2.17 16 26 C -0.12 -2.57 9.69 22.27 0.22 -2.35 16 27 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 28 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 29 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 30 C -0.13 -3.93 8.28 22.27 0.18 -3.74 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 34 H 0.06 1.11 6.47 -2.39 -0.02 1.09 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.40 7.93 -2.39 -0.02 1.39 16 37 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 38 H 0.06 1.82 5.88 -2.39 -0.01 1.81 16 39 H 0.07 1.72 6.30 -2.39 -0.02 1.70 16 40 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.12 2.45 7.93 -2.39 -0.02 2.43 16 42 H 0.09 1.59 8.12 -2.38 -0.02 1.58 16 43 H 0.41 10.06 8.56 -92.71 -0.79 9.26 16 44 H -0.01 -0.68 7.51 -2.39 -0.02 -0.70 16 45 H 0.02 1.31 7.26 -2.39 -0.02 1.29 16 46 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 47 H 0.02 0.89 7.06 -2.39 -0.02 0.87 16 48 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 49 H 0.14 2.43 7.99 -2.91 -0.02 2.41 16 50 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 51 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 52 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 53 H 0.10 3.34 7.01 -2.91 -0.02 3.32 16 Total: -1.00 -78.50 416.47 0.57 -77.92 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.10 Total: 27.42 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 7.02 Total: 8.91 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -8.53 Total: -137.87 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.04 Total: -25.26 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -78.50 0.57 -77.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479425601.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.801 kcal (2) G-P(sol) polarization free energy of solvation -78.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds