Wall clock time and date at job start Wed Apr 1 2020 04:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46951 * 2 1 4 4 N 1.46504 * 109.47259 * 180.02562 * 3 2 1 5 5 C 1.34779 * 119.99690 * 90.00183 * 4 3 2 6 6 O 1.21283 * 120.00007 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99961 * 359.97438 * 5 4 3 8 8 C 1.50706 * 109.46992 * 180.02562 * 7 5 4 9 9 C 1.38673 * 120.78543 * 265.00214 * 8 7 5 10 10 C 1.38185 * 119.16123 * 179.97438 * 9 8 7 11 11 N 1.31886 * 120.76398 * 359.97438 * 10 9 8 12 12 C 1.31853 * 121.72602 * 359.97438 * 11 10 9 13 13 C 1.38227 * 120.76609 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.42174 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00297 * 270.00022 * 4 3 2 16 16 C 1.53033 * 109.46286 * 240.02698 * 15 4 3 17 17 C 1.53192 * 109.31175 * 178.60219 * 16 15 4 18 18 N 1.46917 * 108.76711 * 54.65459 * 17 16 15 19 19 C 1.36946 * 120.63048 * 126.40369 * 18 17 16 20 20 H 1.07995 * 120.00215 * 331.82942 * 19 18 17 21 21 C 1.38818 * 119.99738 * 151.82630 * 19 18 17 22 22 N 1.31619 * 119.99983 * 343.07679 * 21 19 18 23 23 Si 1.86800 * 119.99685 * 163.06988 * 21 19 18 24 24 H 1.48504 * 109.46928 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46900 * 120.00316 * 23 21 19 26 26 H 1.48502 * 109.47094 * 240.00123 * 23 21 19 27 27 C 1.46931 * 118.74086 * 306.38376 * 18 17 16 28 28 C 1.53045 * 109.45634 * 119.96844 * 15 4 3 29 29 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46614 * 299.99532 * 1 2 3 31 31 H 1.08989 * 109.47279 * 59.99671 * 1 2 3 32 32 H 1.09003 * 109.47124 * 240.00332 * 2 1 3 33 33 H 1.09003 * 109.47314 * 120.00178 * 2 1 3 34 34 H 1.09003 * 109.46935 * 60.00217 * 3 2 1 35 35 H 1.09003 * 109.47256 * 300.00213 * 3 2 1 36 36 H 1.08999 * 109.47311 * 60.00528 * 7 5 4 37 37 H 1.08999 * 109.47452 * 300.00071 * 7 5 4 38 38 H 1.07997 * 120.41822 * 359.97438 * 9 8 7 39 39 H 1.07995 * 119.61430 * 180.02562 * 10 9 8 40 40 H 1.08006 * 119.61929 * 179.97438 * 12 11 10 41 41 H 1.08995 * 109.47090 * 270.02542 * 14 13 12 42 42 H 1.09003 * 109.46931 * 30.02357 * 14 13 12 43 43 H 1.08998 * 109.46630 * 150.02245 * 14 13 12 44 44 H 1.09009 * 109.45728 * 0.02562 * 15 4 3 45 45 H 1.08998 * 109.49678 * 298.56685 * 16 15 4 46 46 H 1.09001 * 109.49639 * 58.66175 * 16 15 4 47 47 H 1.09000 * 109.59800 * 294.86395 * 17 16 15 48 48 H 1.09004 * 109.70249 * 174.50718 * 17 16 15 49 49 H 0.96997 * 119.99559 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.58477 * 293.82375 * 27 18 17 51 51 H 1.08998 * 109.70168 * 173.46321 * 27 18 17 52 52 H 1.08997 * 109.49750 * 301.33615 * 28 15 4 53 53 H 1.08994 * 109.49591 * 61.40997 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.4428 -1.1682 6 8 5.3912 1.4424 -1.1687 7 6 3.4242 1.4425 -2.4729 8 6 4.4030 1.4422 -3.6188 9 6 4.7850 2.6289 -4.2262 10 6 5.6852 2.5897 -5.2740 11 7 6.1794 1.4421 -5.6962 12 6 5.8396 0.2950 -5.1419 13 6 4.9445 0.2560 -4.0893 14 6 4.5611 -1.0596 -3.4620 15 6 4.2381 1.4424 1.2677 16 6 5.1173 2.6924 1.3487 17 6 5.8556 2.7065 2.6909 18 7 6.5892 1.4423 2.8401 19 6 7.9310 1.4425 3.1140 20 1 8.5482 2.2672 2.7898 21 6 8.4976 0.3825 3.8086 22 7 7.7309 -0.4443 4.4876 23 14 10.3482 0.1295 3.7793 24 1 10.9794 1.1878 2.9505 25 1 10.8797 0.2028 5.1640 26 1 10.6565 -1.2029 3.2006 27 6 5.8559 0.1780 2.6903 28 6 5.1174 0.1924 1.3482 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.7972 2.3322 -2.5305 37 1 2.7979 0.5522 -2.5304 38 1 4.3841 3.5717 -3.8848 39 1 5.9880 3.5094 -5.7521 40 1 6.2650 -0.6249 -5.5152 41 1 3.6909 -1.4674 -3.9761 42 1 5.3934 -1.7584 -3.5462 43 1 4.3220 -0.9043 -2.4100 44 1 3.5299 1.4418 2.0964 45 1 5.8421 2.6807 0.5347 46 1 4.4930 3.5822 1.2677 47 1 5.1358 2.8093 3.5030 48 1 6.5565 3.5409 2.7161 49 1 8.1270 -1.1847 4.9732 50 1 5.1361 0.0746 3.5023 51 1 6.5555 -0.6575 2.7135 52 1 4.4930 -0.6974 1.2670 53 1 5.8418 0.2042 0.5339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479993495.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:25 Heat of formation + Delta-G solvation = -8.054035 kcal Electronic energy + Delta-G solvation = -31973.899603 eV Core-core repulsion = 28037.848147 eV Total energy + Delta-G solvation = -3936.051456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.77390 -40.82701 -38.70454 -37.13611 -35.50048 -34.76095 -33.42032 -33.33152 -31.89410 -31.36451 -29.67387 -28.05819 -27.30587 -26.44588 -24.40645 -23.88366 -23.52245 -22.69877 -22.41262 -21.13701 -19.86108 -18.85864 -17.82785 -17.71634 -17.54044 -16.99774 -16.62540 -16.10751 -15.93725 -15.64112 -15.44585 -15.33271 -15.30295 -14.84770 -14.61059 -14.53351 -14.26657 -14.13105 -14.00159 -13.64523 -13.60220 -13.48916 -13.25147 -13.08362 -13.01313 -12.92830 -12.71519 -12.61946 -12.60055 -12.30224 -12.18846 -12.13670 -11.99299 -11.79973 -11.57629 -11.38041 -11.22611 -10.75404 -10.57154 -10.41015 -10.25336 -9.79579 -9.51613 -8.69865 -7.90999 -5.34895 0.21951 0.27441 1.40415 1.42865 1.53483 1.72547 2.06684 2.47643 2.85396 3.24108 3.50621 3.59746 3.66368 3.67289 3.79551 4.00046 4.05036 4.06176 4.06901 4.08340 4.23426 4.35501 4.40880 4.46383 4.49540 4.52791 4.54636 4.64196 4.67882 4.73233 4.74724 4.77229 4.82905 4.88302 4.89283 4.96058 5.02067 5.06545 5.09482 5.16516 5.18198 5.28383 5.33063 5.40194 5.43697 5.49698 5.52583 5.61564 5.68089 5.81397 5.82268 6.36768 6.57393 7.04401 7.12550 7.33966 7.83983 8.34478 9.15462 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.003698 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.267205 B = 7569.033782 C = 9346.353326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.101 3.899 4 N -0.606 5.606 5 C 0.510 3.490 6 O -0.565 6.565 7 C -0.095 4.095 8 C -0.035 4.035 9 C -0.161 4.161 10 C 0.075 3.925 11 N -0.512 5.512 12 C 0.078 3.922 13 C -0.130 4.130 14 C -0.108 4.108 15 C 0.171 3.829 16 C -0.131 4.131 17 C 0.147 3.853 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.057 0.943 21 C -0.046 4.046 22 N -0.931 5.931 23 Si 0.961 3.039 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.290 1.290 27 C 0.185 3.815 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.025 0.975 48 H 0.048 0.952 49 H 0.250 0.750 50 H 0.004 0.996 51 H 0.047 0.953 52 H 0.058 0.942 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.135 3.216 -16.968 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C -0.020 4.020 4 N -0.337 5.337 5 C 0.299 3.701 6 O -0.444 6.444 7 C -0.134 4.134 8 C -0.043 4.043 9 C -0.181 4.181 10 C -0.081 4.081 11 N -0.221 5.221 12 C -0.078 4.078 13 C -0.132 4.132 14 C -0.165 4.165 15 C 0.068 3.932 16 C -0.171 4.171 17 C 0.021 3.979 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.075 0.925 21 C -0.242 4.242 22 N -0.577 5.577 23 Si 0.789 3.211 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.217 1.217 27 C 0.059 3.941 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.173 0.827 39 H 0.192 0.808 40 H 0.183 0.817 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.043 0.957 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.022 0.978 51 H 0.066 0.934 52 H 0.076 0.924 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.863 3.122 -17.564 25.962 hybrid contribution 0.966 -0.452 1.215 1.616 sum -17.897 2.670 -16.349 24.387 Atomic orbital electron populations 1.21670 0.93415 1.02317 1.02839 1.21962 0.97406 0.96658 1.02091 1.22031 0.77034 0.97741 1.05236 1.48270 1.07764 1.72879 1.04819 1.20906 0.87672 0.75691 0.85865 1.90768 1.16094 1.49905 1.87617 1.20829 0.97071 1.07841 0.87695 1.19886 0.96381 0.93053 0.95016 1.22280 0.99252 0.99217 0.97308 1.23086 0.93713 0.96547 0.94769 1.67623 1.24637 0.99470 1.30363 1.22913 0.94882 0.96655 0.93356 1.20994 0.97943 0.97014 0.97258 1.20752 1.03085 0.92729 0.99953 1.20750 0.92884 0.94326 0.85226 1.22213 0.98937 0.97384 0.98577 1.20985 0.94177 0.88295 0.94483 1.44258 1.05586 1.01160 1.82271 1.19468 0.84890 1.06570 1.28386 0.92533 1.25698 1.01689 0.99826 0.96954 1.70162 1.35313 1.18625 1.33590 0.85303 0.81006 0.77489 0.77267 1.19754 1.21135 1.21661 1.20485 0.93050 0.88956 0.91659 1.22307 0.98705 0.97176 0.99219 0.92561 0.92278 0.90919 0.91750 0.93336 0.89186 0.87427 0.84638 0.85443 0.82723 0.80848 0.81701 0.88250 0.91098 0.92635 0.89090 0.92986 0.90514 0.95710 0.93379 0.94041 0.97753 0.93412 0.92357 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.14 -1.92 6.26 30.60 0.19 -1.73 16 3 C 0.10 1.40 5.18 86.38 0.45 1.84 16 4 N -0.61 -14.45 2.42 -797.66 -1.93 -16.38 16 5 C 0.51 13.55 6.41 87.66 0.56 14.11 16 6 O -0.57 -21.71 12.28 -3.04 -0.04 -21.74 16 7 C -0.10 -1.60 3.74 29.10 0.11 -1.49 16 8 C -0.03 -0.77 4.41 -19.67 -0.09 -0.85 16 9 C -0.16 -3.38 9.80 22.36 0.22 -3.16 16 10 C 0.07 1.71 11.18 84.67 0.95 2.66 16 11 N -0.51 -13.81 10.36 -195.84 -2.03 -15.84 16 12 C 0.08 1.95 10.86 84.69 0.92 2.87 16 13 C -0.13 -3.03 5.90 -19.77 -0.12 -3.14 16 14 C -0.11 -2.06 9.30 71.24 0.66 -1.40 16 15 C 0.17 5.55 2.51 45.02 0.11 5.66 16 16 C -0.13 -4.78 5.27 30.67 0.16 -4.61 16 17 C 0.15 6.40 6.52 86.36 0.56 6.96 16 18 N -0.61 -32.56 2.99 -699.09 -2.09 -34.65 16 19 C -0.26 -15.52 9.58 84.03 0.81 -14.71 16 20 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 21 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 22 N -0.93 -56.74 11.19 21.65 0.24 -56.50 16 23 Si 0.96 47.50 29.59 68.60 2.03 49.53 16 24 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 C 0.18 9.36 5.30 86.36 0.46 9.82 16 28 C -0.13 -5.47 5.27 30.67 0.16 -5.31 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.85 7.22 -2.39 -0.02 0.83 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.13 7.92 -2.39 -0.02 1.11 16 35 H 0.11 0.82 6.44 -2.39 -0.02 0.81 16 36 H 0.14 1.35 7.33 -2.39 -0.02 1.34 16 37 H 0.13 1.55 6.15 -2.39 -0.01 1.54 16 38 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 43 H 0.05 1.21 6.34 -2.39 -0.02 1.20 16 44 H 0.09 2.70 7.80 -2.38 -0.02 2.69 16 45 H 0.05 2.25 6.21 -2.39 -0.01 2.24 16 46 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.05 2.11 7.93 -2.38 -0.02 2.09 16 49 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 50 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 51 H 0.05 2.78 6.07 -2.39 -0.01 2.76 16 52 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 53 H 0.05 2.29 6.21 -2.39 -0.01 2.28 16 Total: -1.00 -79.08 409.83 4.31 -74.77 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.88 Total: 16.22 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 7.25 Total: 4.61 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -5.81 Total: -123.38 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.04 Total: -21.74 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -79.08 4.31 -74.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479993495.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.711 kcal (2) G-P(sol) polarization free energy of solvation -79.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds