Wall clock time and date at job start Wed Apr 1 2020 04:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47053 * 2 1 4 4 N 1.46507 * 109.46935 * 182.56344 * 3 2 1 5 5 C 1.34778 * 119.99758 * 98.01340 * 4 3 2 6 6 O 1.21557 * 119.99513 * 186.93671 * 5 4 3 7 7 C 1.47837 * 120.00183 * 6.93281 * 5 4 3 8 8 C 1.39557 * 120.55989 * 132.10240 * 7 5 4 9 9 N 1.31668 * 120.56693 * 180.02562 * 8 7 5 10 10 C 1.31951 * 121.87778 * 359.97438 * 9 8 7 11 11 C 1.38307 * 121.08260 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.34860 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46976 * 270.00033 * 12 11 10 14 14 C 1.38401 * 119.30585 * 359.97438 * 11 10 9 15 15 C 1.46497 * 119.99787 * 278.01538 * 4 3 2 16 16 C 1.53045 * 109.45693 * 240.02351 * 15 4 3 17 17 C 1.53190 * 109.31220 * 178.60177 * 16 15 4 18 18 N 1.46921 * 108.76509 * 54.65491 * 17 16 15 19 19 C 1.36940 * 120.62835 * 126.40425 * 18 17 16 20 20 H 1.08007 * 120.00190 * 329.41861 * 19 18 17 21 21 C 1.38813 * 120.00052 * 149.41229 * 19 18 17 22 22 N 1.31622 * 120.00017 * 174.17637 * 21 19 18 23 23 Si 1.86801 * 119.99827 * 354.18144 * 21 19 18 24 24 H 1.48498 * 109.47213 * 91.80065 * 23 21 19 25 25 H 1.48506 * 109.47098 * 211.79858 * 23 21 19 26 26 H 1.48500 * 109.47255 * 331.79359 * 23 21 19 27 27 C 1.46920 * 118.74195 * 306.38208 * 18 17 16 28 28 C 1.53040 * 109.46071 * 119.97194 * 15 4 3 29 29 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47545 * 300.00284 * 1 2 3 31 31 H 1.09006 * 109.46779 * 60.00191 * 1 2 3 32 32 H 1.08996 * 109.46815 * 239.99730 * 2 1 3 33 33 H 1.08998 * 109.46593 * 120.00081 * 2 1 3 34 34 H 1.08995 * 109.47615 * 62.56419 * 3 2 1 35 35 H 1.09005 * 109.47233 * 302.56278 * 3 2 1 36 36 H 1.08005 * 119.71785 * 359.97438 * 8 7 5 37 37 H 1.08001 * 119.45947 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.46880 * 29.99340 * 12 11 10 39 39 H 1.08996 * 109.47230 * 149.99198 * 12 11 10 40 40 H 1.09004 * 109.47059 * 180.02562 * 13 12 11 41 41 H 1.09003 * 109.46750 * 299.99386 * 13 12 11 42 42 H 1.08996 * 109.47823 * 59.99528 * 13 12 11 43 43 H 1.08002 * 120.85460 * 180.02562 * 14 11 10 44 44 H 1.08999 * 109.46153 * 359.97438 * 15 4 3 45 45 H 1.09001 * 109.50292 * 298.56959 * 16 15 4 46 46 H 1.09007 * 109.49764 * 58.66616 * 16 15 4 47 47 H 1.09005 * 109.59525 * 294.86699 * 17 16 15 48 48 H 1.09007 * 109.70371 * 174.50927 * 17 16 15 49 49 H 0.96997 * 119.99764 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.59236 * 293.82469 * 27 18 17 51 51 H 1.09005 * 109.70611 * 173.45921 * 27 18 17 52 52 H 1.08999 * 109.49812 * 301.33311 * 28 15 4 53 53 H 1.09001 * 109.49527 * 61.43590 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4429 -0.0618 5 6 4.1283 1.6230 -1.2425 6 8 5.3352 1.4983 -1.3168 7 6 3.3456 1.9721 -2.4471 8 6 3.7482 3.0204 -3.2757 9 7 3.0510 3.3318 -4.3483 10 6 1.9563 2.6753 -4.6827 11 6 1.4913 1.6239 -3.9138 12 6 0.2394 0.8851 -4.3115 13 6 -0.9751 1.5554 -3.6662 14 6 2.1882 1.2568 -2.7758 15 6 4.2885 1.2475 1.1598 16 6 5.1781 2.4703 1.3952 17 6 5.9712 2.2778 2.6917 18 7 6.7024 1.0058 2.6139 19 6 8.0543 0.9640 2.8284 20 1 8.6682 1.8151 2.5729 21 6 8.6356 -0.1722 3.3742 22 7 9.9452 -0.2580 3.4744 23 14 7.5593 -1.5794 3.9665 24 1 7.3693 -2.5554 2.8635 25 1 8.2141 -2.2534 5.1164 26 1 6.2390 -1.0483 4.3904 27 6 5.9557 -0.2205 2.3022 28 6 5.1625 0.0002 1.0102 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.7147 1.9429 0.9120 35 1 1.6396 1.9694 -0.8661 36 1 4.6390 3.5817 -3.0346 37 1 1.4142 2.9641 -5.5710 38 1 0.1333 0.9078 -5.3961 39 1 0.3054 -0.1493 -3.9744 40 1 -1.8805 1.0208 -3.9535 41 1 -0.8690 1.5328 -2.5816 42 1 -1.0411 2.5899 -4.0032 43 1 1.8477 0.4394 -2.1574 44 1 3.6152 1.1200 2.0074 45 1 5.8687 2.5843 0.5596 46 1 4.5565 3.3619 1.4783 47 1 5.2861 2.2542 3.5392 48 1 6.6777 3.0985 2.8157 49 1 10.3514 -1.0521 3.8555 50 1 5.2694 -0.4478 3.1179 51 1 6.6504 -1.0496 2.1673 52 1 4.5299 -0.8666 0.8192 53 1 5.8533 0.1376 0.1783 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479993692.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:05 Heat of formation + Delta-G solvation = 8.479791 kcal Electronic energy + Delta-G solvation = -32037.817156 eV Core-core repulsion = 28102.482660 eV Total energy + Delta-G solvation = -3935.334496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.13412 -40.72688 -38.90344 -37.47749 -35.67076 -35.10205 -33.66574 -33.40547 -32.04106 -31.64609 -30.66446 -27.40023 -27.05567 -25.45847 -25.11182 -24.55119 -23.98112 -22.89538 -22.31926 -21.49811 -20.09447 -18.97596 -18.35176 -17.89756 -17.87113 -17.46686 -16.78239 -16.17719 -15.94171 -15.79963 -15.67464 -15.43531 -15.12150 -14.85615 -14.80689 -14.64180 -14.61951 -14.22476 -14.05494 -13.90191 -13.83055 -13.58665 -13.48222 -13.25710 -12.99831 -12.87370 -12.70241 -12.59538 -12.38347 -12.25692 -12.15727 -11.96557 -11.89185 -11.64023 -11.58378 -11.46112 -11.22510 -10.91304 -10.79280 -10.70142 -10.39883 -10.02186 -9.67465 -8.89363 -8.15248 -5.57014 -0.28392 0.11705 1.28715 1.38084 1.48718 1.57446 1.85819 2.40793 2.66312 3.11593 3.17857 3.28758 3.46928 3.69293 3.73949 3.84167 3.87318 3.89829 3.91699 4.11012 4.12724 4.22417 4.33232 4.34181 4.41359 4.49215 4.51144 4.54269 4.56158 4.60602 4.62186 4.69551 4.75487 4.85771 4.89288 4.92420 4.93442 4.96310 5.00262 5.07032 5.17697 5.18525 5.25458 5.32283 5.36437 5.37605 5.43626 5.54259 5.62176 5.66837 5.86878 6.11113 6.34527 6.82529 6.90120 7.07908 7.59506 7.99202 9.04795 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.003058 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.670773 B = 9152.679255 C = 9980.866350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.094 3.906 4 N -0.595 5.595 5 C 0.555 3.445 6 O -0.563 6.563 7 C -0.181 4.181 8 C 0.125 3.875 9 N -0.501 5.501 10 C 0.112 3.888 11 C -0.127 4.127 12 C -0.078 4.078 13 C -0.149 4.149 14 C -0.054 4.054 15 C 0.169 3.831 16 C -0.139 4.139 17 C 0.153 3.847 18 N -0.622 5.622 19 C -0.248 4.248 20 H 0.041 0.959 21 C -0.049 4.049 22 N -0.972 5.972 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.315 1.315 26 H -0.229 1.229 27 C 0.122 3.878 28 C -0.142 4.142 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.148 0.852 37 H 0.187 0.813 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.164 0.836 44 H 0.114 0.886 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.261 0.739 50 H 0.057 0.943 51 H 0.040 0.960 52 H 0.074 0.926 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.074 2.323 -13.778 35.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C -0.027 4.027 4 N -0.326 5.326 5 C 0.344 3.656 6 O -0.442 6.442 7 C -0.186 4.186 8 C -0.032 4.032 9 N -0.209 5.209 10 C -0.045 4.045 11 C -0.129 4.129 12 C -0.116 4.116 13 C -0.206 4.206 14 C -0.079 4.079 15 C 0.066 3.934 16 C -0.178 4.178 17 C 0.028 3.972 18 N -0.347 5.347 19 C -0.378 4.378 20 H 0.059 0.941 21 C -0.242 4.242 22 N -0.619 5.619 23 Si 0.796 3.204 24 H -0.214 1.214 25 H -0.245 1.245 26 H -0.152 1.152 27 C -0.003 4.003 28 C -0.182 4.182 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.165 0.835 37 H 0.204 0.796 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.181 0.819 44 H 0.131 0.869 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.092 0.908 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -32.058 2.917 -14.267 35.211 hybrid contribution 1.005 -1.274 0.732 1.780 sum -31.053 1.643 -13.535 33.914 Atomic orbital electron populations 1.21737 0.92769 1.02877 1.03090 1.22087 0.98006 0.95885 1.02490 1.22206 0.77098 0.98406 1.05034 1.48136 1.07921 1.70331 1.06191 1.18588 0.86738 0.76602 0.83721 1.90844 1.16199 1.51565 1.85557 1.20865 0.98623 1.01222 0.97924 1.22749 0.97692 0.93650 0.89099 1.67772 1.07757 1.29476 1.15903 1.23436 0.91205 0.90671 0.99148 1.21195 0.99111 0.97796 0.94776 1.20587 0.89593 0.98860 1.02534 1.21810 0.96846 1.00915 1.01022 1.22303 0.91034 0.98238 0.96336 1.20895 0.92326 0.93990 0.86203 1.22276 0.98743 0.97927 0.98889 1.21013 0.94120 0.86911 0.95190 1.44421 1.03861 1.04186 1.82261 1.18846 0.83152 1.01891 1.33889 0.94124 1.26166 0.96919 1.02100 0.99005 1.69917 1.10978 1.30173 1.50806 0.85757 0.79974 0.78458 0.76250 1.21413 1.24528 1.15215 1.21606 0.94125 0.89012 0.95554 1.22356 0.99031 0.98010 0.98804 0.91735 0.91658 0.91248 0.92087 0.91499 0.88353 0.88855 0.83459 0.79605 0.88880 0.89758 0.90700 0.92299 0.92557 0.81857 0.86859 0.93794 0.89787 0.92895 0.93176 0.93052 0.92559 0.94164 0.90778 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.27 16 2 C -0.15 -1.75 5.46 30.59 0.17 -1.58 16 3 C 0.09 1.37 4.81 86.38 0.42 1.78 16 4 N -0.60 -14.50 2.43 -801.06 -1.95 -16.45 16 5 C 0.56 16.73 6.67 86.78 0.58 17.31 16 6 O -0.56 -23.17 13.32 -3.90 -0.05 -23.22 16 7 C -0.18 -4.33 5.04 -20.00 -0.10 -4.43 16 8 C 0.13 3.19 10.89 85.04 0.93 4.11 16 9 N -0.50 -11.34 10.35 -194.76 -2.01 -13.35 16 10 C 0.11 1.72 10.85 84.69 0.92 2.64 16 11 C -0.13 -1.60 5.15 -19.81 -0.10 -1.71 16 12 C -0.08 -0.45 6.09 29.85 0.18 -0.27 16 13 C -0.15 -0.62 9.89 71.98 0.71 0.09 16 14 C -0.05 -0.88 7.24 22.73 0.16 -0.72 16 15 C 0.17 4.94 2.49 45.02 0.11 5.06 16 16 C -0.14 -4.73 5.27 30.67 0.16 -4.57 16 17 C 0.15 6.08 6.52 86.36 0.56 6.64 16 18 N -0.62 -30.81 2.82 -699.09 -1.97 -32.78 16 19 C -0.25 -15.10 10.13 84.03 0.85 -14.25 16 20 H 0.04 2.76 8.06 -2.91 -0.02 2.74 16 21 C -0.05 -3.02 5.45 84.86 0.46 -2.56 16 22 N -0.97 -64.92 13.97 21.65 0.30 -64.62 16 23 Si 0.97 48.25 24.27 68.60 1.67 49.92 16 24 H -0.29 -13.90 6.79 99.48 0.68 -13.23 16 25 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 26 H -0.23 -10.07 5.39 99.48 0.54 -9.54 16 27 C 0.12 5.30 4.07 86.37 0.35 5.65 16 28 C -0.14 -5.25 5.26 30.67 0.16 -5.09 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.30 6.78 -2.38 -0.02 0.29 16 32 H 0.06 0.81 6.06 -2.39 -0.01 0.79 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.09 1.21 5.08 -2.38 -0.01 1.19 16 36 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.09 0.32 8.09 -2.39 -0.02 0.30 16 39 H 0.08 0.41 8.09 -2.39 -0.02 0.39 16 40 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 41 H 0.06 0.25 6.78 -2.39 -0.02 0.23 16 42 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.16 2.14 4.01 -2.91 -0.01 2.12 16 44 H 0.11 2.67 7.90 -2.39 -0.02 2.65 16 45 H 0.04 1.86 6.45 -2.39 -0.02 1.84 16 46 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 48 H 0.05 2.11 7.93 -2.38 -0.02 2.09 16 49 H 0.26 16.48 8.31 -92.71 -0.77 15.70 16 50 H 0.06 2.19 6.46 -2.39 -0.02 2.18 16 51 H 0.04 1.98 3.91 -2.38 -0.01 1.97 16 52 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 53 H 0.05 2.42 6.00 -2.39 -0.01 2.40 16 Total: -1.00 -82.60 396.87 3.92 -78.68 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.70 Total: 14.00 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 7.24 Total: 7.83 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.63 Total: -127.20 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.67 Total: 49.92 kcal Total: -82.60 3.92 -78.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479993692.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.156 kcal (2) G-P(sol) polarization free energy of solvation -82.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds