Wall clock time and date at job start Wed Apr 1 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 N 1.46500 * 109.46938 * 179.97438 * 3 2 1 5 5 C 1.36933 * 119.99871 * 275.87420 * 4 3 2 6 6 H 1.07996 * 120.00118 * 324.14435 * 5 4 3 7 7 C 1.38816 * 120.00010 * 144.14223 * 5 4 3 8 8 N 1.31621 * 120.00117 * 337.30018 * 7 5 4 9 9 Si 1.86798 * 120.00047 * 157.29604 * 7 5 4 10 10 H 1.48506 * 109.47240 * 90.00214 * 9 7 5 11 11 H 1.48501 * 109.47374 * 210.00263 * 9 7 5 12 12 H 1.48499 * 109.47290 * 330.00218 * 9 7 5 13 13 C 1.46500 * 120.00284 * 95.87628 * 4 3 2 14 14 C 1.52995 * 109.47203 * 89.99558 * 13 4 3 15 15 N 1.46500 * 109.47203 * 180.02562 * 14 13 4 16 16 C 1.34774 * 120.00321 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00022 * 355.26043 * 16 15 14 18 18 C 1.50699 * 120.00131 * 175.25373 * 16 15 14 19 19 H 1.09004 * 109.44176 * 25.73622 * 18 16 15 20 20 C 1.53041 * 109.43779 * 145.62137 * 18 16 15 21 21 C 1.53400 * 107.92794 * 167.32033 * 20 18 16 22 22 N 1.46424 * 108.63757 * 291.72307 * 21 20 18 23 23 C 1.46900 * 110.99896 * 287.82650 * 22 21 20 24 24 C 1.39406 * 113.12817 * 53.36565 * 22 21 20 25 25 C 1.39614 * 117.64943 * 160.12736 * 24 22 21 26 26 C 1.37808 * 120.42053 * 179.60556 * 25 24 22 27 27 C 1.38312 * 119.95194 * 0.02562 * 26 25 24 28 28 C 1.38053 * 119.88888 * 0.11193 * 27 26 25 29 29 C 1.38379 * 122.96145 * 339.95628 * 24 22 21 30 30 H 1.09005 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47379 * 300.00351 * 1 2 3 32 32 H 1.08999 * 109.46964 * 60.00075 * 1 2 3 33 33 H 1.08993 * 109.46842 * 240.00001 * 2 1 3 34 34 H 1.09000 * 109.46666 * 119.99472 * 2 1 3 35 35 H 1.08999 * 109.47268 * 299.99740 * 3 2 1 36 36 H 1.09001 * 109.47408 * 59.99666 * 3 2 1 37 37 H 0.96996 * 119.99709 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.47403 * 210.00211 * 13 4 3 39 39 H 1.09003 * 109.46752 * 329.99804 * 13 4 3 40 40 H 1.08995 * 109.47414 * 300.00190 * 14 13 4 41 41 H 1.09003 * 109.47066 * 60.00438 * 14 13 4 42 42 H 0.97005 * 120.00121 * 0.02562 * 15 14 13 43 43 H 1.08997 * 109.77161 * 286.92854 * 20 18 16 44 44 H 1.08998 * 109.77399 * 47.72272 * 20 18 16 45 45 H 1.09003 * 109.60573 * 171.98015 * 21 20 18 46 46 H 1.09005 * 109.76406 * 51.55258 * 21 20 18 47 47 H 1.08996 * 109.47403 * 182.76980 * 23 22 21 48 48 H 1.09002 * 109.46719 * 302.76943 * 23 22 21 49 49 H 1.08998 * 109.47415 * 62.76706 * 23 22 21 50 50 H 1.08005 * 119.79132 * 359.59069 * 25 24 22 51 51 H 1.08006 * 120.02195 * 180.02562 * 26 25 24 52 52 H 1.07999 * 120.05480 * 180.13112 * 27 26 25 53 53 H 1.07998 * 119.75351 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3213 1.1806 6 1 3.8023 1.7798 2.0786 7 6 5.3800 0.6092 1.2225 8 7 5.6355 -0.3003 0.3060 9 14 6.6198 0.9416 2.5795 10 1 6.3372 0.0545 3.7365 11 1 7.9904 0.6745 2.0742 12 1 6.5176 2.3601 3.0069 13 6 4.2381 1.5722 -1.2611 14 6 4.4931 3.0523 -1.5529 15 7 5.2257 3.1820 -2.8150 16 6 5.5631 4.4027 -3.2759 17 8 5.1868 5.3968 -2.6920 18 6 6.4083 4.5324 -4.5169 19 1 6.2746 3.6487 -5.1409 20 6 5.9785 5.7763 -5.2980 21 6 7.0463 6.0575 -6.3629 22 7 8.2768 6.4804 -5.6915 23 6 8.1377 7.8358 -5.1423 24 6 8.7008 5.5852 -4.7105 25 6 10.0372 5.6469 -4.3111 26 6 10.5152 4.7941 -3.3398 27 6 9.6688 3.8696 -2.7551 28 6 8.3471 3.8020 -3.1481 29 6 7.8594 4.6555 -4.1253 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 6.4675 -0.7981 0.3355 38 1 5.1905 1.0477 -1.1836 39 1 3.6494 1.1387 -2.0696 40 1 3.5408 3.5767 -1.6305 41 1 5.0819 3.4858 -0.7445 42 1 5.4679 2.3893 -3.3189 43 1 5.0170 5.5959 -5.7787 44 1 5.8995 6.6274 -4.6217 45 1 6.7009 6.8500 -7.0269 46 1 7.2373 5.1533 -6.9410 47 1 9.0813 8.1442 -4.6923 48 1 7.8740 8.5269 -5.9430 49 1 7.3545 7.8422 -4.3843 50 1 10.7006 6.3674 -4.7664 51 1 11.5501 4.8477 -3.0354 52 1 10.0412 3.2019 -1.9923 53 1 7.6880 3.0796 -2.6898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481138464.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:33 Heat of formation + Delta-G solvation = -9.777037 kcal Electronic energy + Delta-G solvation = -31105.588426 eV Core-core repulsion = 27169.462255 eV Total energy + Delta-G solvation = -3936.126171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.09422 -40.28909 -38.25649 -37.95298 -35.84144 -34.97437 -34.53548 -32.66170 -31.40970 -30.91353 -30.00224 -28.18026 -27.34828 -25.83439 -24.85035 -24.15223 -23.34795 -22.86214 -21.71337 -21.50417 -20.41433 -18.91769 -18.27406 -17.73245 -17.32195 -16.99916 -16.87301 -16.72973 -16.15135 -15.87581 -15.68193 -15.40476 -15.21381 -15.16622 -14.79690 -14.69689 -14.41211 -14.24620 -14.07413 -13.83793 -13.67059 -13.38821 -13.14778 -13.07780 -13.00251 -12.82877 -12.74689 -12.60678 -12.54441 -12.36894 -12.19423 -12.05734 -11.91170 -11.82195 -11.74758 -11.67951 -11.34871 -11.07998 -10.57293 -10.34255 -10.09815 -9.74479 -8.93648 -8.63419 -7.88732 -5.46338 0.28434 0.36745 1.40217 1.44665 1.52873 1.53311 2.12469 2.48781 2.66450 2.90085 3.20433 3.46836 3.60796 3.67356 3.79611 3.91175 4.10493 4.17236 4.23227 4.25961 4.31535 4.32592 4.38219 4.44531 4.47007 4.53541 4.56072 4.57510 4.67007 4.67594 4.75751 4.79240 4.80435 4.84866 4.95066 4.97112 5.02878 5.14416 5.17139 5.20676 5.26807 5.32006 5.36897 5.42240 5.46015 5.57300 5.60637 5.64057 5.76931 5.77361 5.98607 6.34723 6.41854 6.52532 7.11518 7.18457 7.80830 8.32299 9.08518 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.003104 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.645911 B = 9017.498464 C =10765.864566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.144 3.856 4 N -0.596 5.596 5 C -0.271 4.271 6 H 0.051 0.949 7 C -0.024 4.024 8 N -0.906 5.906 9 Si 0.944 3.056 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.281 1.281 13 C 0.146 3.854 14 C 0.121 3.879 15 N -0.711 5.711 16 C 0.520 3.480 17 O -0.585 6.585 18 C -0.057 4.057 19 H 0.124 0.876 20 C -0.141 4.141 21 C 0.059 3.941 22 N -0.502 5.502 23 C 0.026 3.974 24 C 0.109 3.891 25 C -0.125 4.125 26 C -0.102 4.102 27 C -0.145 4.145 28 C -0.120 4.120 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.028 0.972 42 H 0.411 0.589 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.018 0.982 50 H 0.147 0.853 51 H 0.151 0.849 52 H 0.127 0.873 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 10.239 -16.059 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.019 3.981 4 N -0.317 5.317 5 C -0.402 4.402 6 H 0.069 0.931 7 C -0.222 4.222 8 N -0.549 5.549 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.207 1.207 13 C 0.019 3.981 14 C -0.005 4.005 15 N -0.362 5.362 16 C 0.307 3.693 17 O -0.465 6.465 18 C -0.078 4.078 19 H 0.142 0.858 20 C -0.180 4.180 21 C -0.068 4.068 22 N -0.218 5.218 23 C -0.119 4.119 24 C 0.013 3.987 25 C -0.145 4.145 26 C -0.121 4.121 27 C -0.164 4.164 28 C -0.139 4.139 29 C -0.125 4.125 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.247 0.753 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.130 0.870 46 H 0.111 0.889 47 H 0.095 0.905 48 H 0.117 0.883 49 H 0.037 0.963 50 H 0.165 0.835 51 H 0.169 0.831 52 H 0.145 0.855 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.079 10.881 -16.013 20.015 hybrid contribution 0.101 -0.759 1.699 1.864 sum 5.180 10.122 -14.314 18.280 Atomic orbital electron populations 1.21671 0.94267 1.01696 1.01940 1.21877 0.95971 0.98999 0.99937 1.21097 0.83398 0.94620 0.99016 1.43892 1.00863 1.83893 1.03053 1.19164 1.04992 1.26776 0.89230 0.93109 1.25605 1.01853 0.95125 0.99615 1.70076 1.24899 1.22289 1.37635 0.85667 0.79250 0.77901 0.79991 1.20817 1.21248 1.20685 1.20895 0.99353 0.90948 0.86935 1.21831 0.94289 1.00562 0.83833 1.46069 1.57355 1.08463 1.24300 1.20912 0.79431 0.82733 0.86238 1.90641 1.56398 1.38426 1.61020 1.20270 0.90577 1.02921 0.94078 0.85822 1.22130 1.01310 0.95965 0.98569 1.22369 0.85810 1.03413 0.95174 1.58894 1.33088 1.02676 1.27135 1.22559 1.01655 0.87726 0.99956 1.18631 0.93650 0.94208 0.92231 1.21279 0.93696 1.00954 0.98533 1.21318 1.00737 0.94407 0.95592 1.21286 0.93643 1.00314 1.01114 1.21217 0.96790 0.98943 0.96984 1.19558 0.93631 1.00457 0.98887 0.92473 0.92627 0.91940 0.94285 0.94987 0.92747 0.94452 0.93742 0.90497 0.93893 0.93718 0.95335 0.75298 0.88700 0.92048 0.86995 0.88934 0.90474 0.88304 0.96282 0.83515 0.83113 0.85459 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.24 16 2 C -0.13 -4.93 6.22 30.60 0.19 -4.74 16 3 C 0.14 5.93 5.68 86.38 0.49 6.42 16 4 N -0.60 -28.98 2.45 -702.01 -1.72 -30.70 16 5 C -0.27 -14.73 9.46 84.04 0.79 -13.93 16 6 H 0.05 2.81 7.93 -2.91 -0.02 2.79 16 7 C -0.02 -1.28 4.94 84.86 0.42 -0.86 16 8 N -0.91 -50.30 11.43 21.65 0.25 -50.05 16 9 Si 0.94 44.35 29.61 68.60 2.03 46.38 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.15 6.46 5.38 86.38 0.46 6.92 16 14 C 0.12 5.00 6.00 86.38 0.52 5.52 16 15 N -0.71 -23.72 4.72 -463.08 -2.18 -25.90 16 16 C 0.52 17.55 5.89 87.66 0.52 18.07 16 17 O -0.58 -24.81 16.03 -3.02 -0.05 -24.86 16 18 C -0.06 -1.44 2.67 -12.24 -0.03 -1.48 16 19 H 0.12 2.44 8.10 -2.39 -0.02 2.43 16 20 C -0.14 -2.99 5.19 30.74 0.16 -2.83 16 21 C 0.06 0.96 5.81 86.53 0.50 1.47 16 22 N -0.50 -9.77 4.74 -720.60 -3.42 -13.19 16 23 C 0.03 0.46 9.22 127.69 1.18 1.63 16 24 C 0.11 2.62 5.12 38.30 0.20 2.81 16 25 C -0.13 -2.68 9.29 22.50 0.21 -2.47 16 26 C -0.10 -2.21 10.03 22.19 0.22 -1.99 16 27 C -0.15 -3.84 10.05 22.24 0.22 -3.61 16 28 C -0.12 -3.58 9.07 22.32 0.20 -3.38 16 29 C -0.12 -3.32 5.40 -19.71 -0.11 -3.43 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 36 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 37 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 38 H 0.08 3.85 5.44 -2.39 -0.01 3.84 16 39 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.41 11.47 8.44 -92.70 -0.78 10.69 16 43 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 1.64 5.76 -2.39 -0.01 1.63 16 45 H 0.11 1.27 7.98 -2.39 -0.02 1.25 16 46 H 0.09 1.36 8.11 -2.38 -0.02 1.34 16 47 H 0.08 1.24 7.70 -2.39 -0.02 1.22 16 48 H 0.10 1.20 8.05 -2.39 -0.02 1.18 16 49 H 0.02 0.41 6.60 -2.39 -0.02 0.40 16 50 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 51 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 52 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 53 H 0.11 3.53 6.74 -2.91 -0.02 3.51 16 Total: -1.00 -68.21 418.30 1.88 -66.33 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.10 Total: 31.12 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 6.86 Total: 0.86 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -7.07 Total: -119.84 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.21 1.88 -66.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481138464.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.556 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds