Wall clock time and date at job start Wed Apr 1 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47416 * 2 1 4 4 C 1.52998 * 109.47502 * 120.00637 * 2 1 3 5 5 C 1.53003 * 109.47367 * 66.19007 * 4 2 1 6 6 H 1.08995 * 109.46821 * 304.10620 * 5 4 2 7 7 C 1.53001 * 109.46839 * 64.10170 * 5 4 2 8 8 N 1.46493 * 109.46977 * 174.99804 * 7 5 4 9 9 C 1.36939 * 120.00167 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00010 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00096 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00085 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47012 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47419 * 119.99605 * 13 11 9 16 16 H 1.48499 * 109.47049 * 240.00087 * 13 11 9 17 17 N 1.46494 * 109.47282 * 184.10312 * 5 4 2 18 18 C 1.34780 * 120.00204 * 88.29549 * 17 5 4 19 19 O 1.21596 * 119.99513 * 354.86385 * 18 17 5 20 20 C 1.47514 * 120.00392 * 174.86564 * 18 17 5 21 21 C 1.39813 * 120.21267 * 359.97290 * 20 18 17 22 22 C 1.37395 * 120.12562 * 180.15576 * 21 20 18 23 23 C 1.39756 * 120.39053 * 359.97438 * 22 21 20 24 24 C 1.39318 * 119.29855 * 359.49392 * 23 22 21 25 25 C 1.37420 * 120.64254 * 0.91363 * 24 23 22 26 26 C 1.51611 * 107.88439 * 180.62172 * 24 23 22 27 27 C 1.54605 * 102.68805 * 16.18076 * 26 24 23 28 28 N 1.39461 * 129.74760 * 179.52622 * 23 22 21 29 29 C 1.46899 * 110.99741 * 283.48410 * 28 23 22 30 30 H 1.09006 * 109.47181 * 63.80691 * 1 2 3 31 31 H 1.09004 * 109.47380 * 183.81178 * 1 2 3 32 32 H 1.08997 * 109.46791 * 303.81126 * 1 2 3 33 33 H 1.09007 * 109.47228 * 240.00239 * 2 1 3 34 34 H 1.09002 * 109.47042 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46905 * 300.00000 * 3 2 1 36 36 H 1.08995 * 109.47009 * 60.00252 * 3 2 1 37 37 H 1.09001 * 109.46674 * 306.19457 * 4 2 1 38 38 H 1.08998 * 109.47612 * 186.19503 * 4 2 1 39 39 H 1.08993 * 109.47552 * 295.00242 * 7 5 4 40 40 H 1.09006 * 109.46606 * 55.00124 * 7 5 4 41 41 H 0.97004 * 120.00166 * 0.02562 * 8 7 5 42 42 H 0.97000 * 120.00326 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00139 * 268.29672 * 17 5 4 44 44 H 1.08001 * 119.93512 * 0.18438 * 21 20 18 45 45 H 1.08000 * 119.80322 * 180.02562 * 22 21 20 46 46 H 1.08007 * 120.01802 * 179.47491 * 25 24 23 47 47 H 1.09000 * 110.95285 * 257.80649 * 26 24 23 48 48 H 1.08997 * 110.76921 * 134.46876 * 26 24 23 49 49 H 1.08995 * 110.77406 * 215.99463 * 27 26 24 50 50 H 1.08997 * 110.78028 * 92.56859 * 27 26 24 51 51 H 1.09005 * 109.46829 * 59.87856 * 29 28 23 52 52 H 1.09004 * 109.46800 * 179.87553 * 29 28 23 53 53 H 1.08994 * 109.47276 * 299.87946 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6611 -2.2018 1.1737 6 1 0.5829 -2.2946 1.0433 7 6 2.3761 -2.8514 -0.0128 8 7 2.1086 -4.2917 -0.0150 9 6 2.6484 -5.0868 -0.9905 10 1 3.2716 -4.6522 -1.7580 11 6 2.3946 -6.4515 -0.9930 12 7 1.6355 -6.9814 -0.0574 13 14 3.1315 -7.5363 -2.3233 14 1 3.9408 -6.7036 -3.2490 15 1 3.9984 -8.5670 -1.6978 16 1 2.0407 -8.2004 -3.0810 17 7 2.0627 -2.8724 2.4126 18 6 1.2193 -2.9085 3.4634 19 8 0.1644 -2.3055 3.4171 20 6 1.5761 -3.6792 4.6695 21 6 2.7877 -4.3745 4.7273 22 6 3.1168 -5.0944 5.8503 23 6 2.2460 -5.1378 6.9426 24 6 1.0448 -4.4345 6.8852 25 6 0.7050 -3.7190 5.7623 26 6 0.3177 -4.6470 8.1985 27 6 1.4336 -5.1900 9.1206 28 7 2.3760 -5.8045 8.1606 29 6 2.1080 -7.2405 8.0060 30 1 -0.3634 0.4536 -0.9222 31 1 -0.3634 -1.0254 0.0683 32 1 -0.3633 0.5718 0.8539 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.5890 -0.2756 2.1357 38 1 3.1244 -0.6263 1.3063 39 1 2.0112 -2.4127 -0.9414 40 1 3.4494 -2.6812 0.0724 41 1 1.5492 -4.6822 0.6745 42 1 1.4585 -7.9351 -0.0588 43 1 2.9356 -3.2906 2.4768 44 1 3.4665 -4.3452 3.8877 45 1 4.0542 -5.6292 5.8895 46 1 -0.2327 -3.1843 5.7255 47 1 -0.4819 -5.3793 8.0873 48 1 -0.0742 -3.7043 8.5803 49 1 1.0379 -5.9384 9.8070 50 1 1.9131 -4.3778 9.6669 51 1 2.8150 -7.6675 7.2946 52 1 2.2184 -7.7366 8.9703 53 1 1.0919 -7.3830 7.6383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482396009.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:13 Heat of formation + Delta-G solvation = -16.881625 kcal Electronic energy + Delta-G solvation = -30682.938024 eV Core-core repulsion = 26746.503775 eV Total energy + Delta-G solvation = -3936.434249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.96404 -40.89078 -38.66426 -37.43283 -36.34956 -35.17543 -33.48071 -32.98263 -31.47217 -30.44873 -29.68005 -28.00899 -27.21602 -27.02997 -25.03867 -24.36053 -23.41394 -22.56856 -21.98778 -21.16149 -20.59518 -19.26044 -18.55058 -17.67990 -17.43374 -16.85812 -16.68966 -16.38961 -16.13171 -15.81096 -15.68267 -15.28986 -15.04776 -15.03254 -14.74920 -14.54876 -14.28479 -14.21917 -14.01268 -13.89250 -13.67104 -13.40767 -13.34801 -13.14376 -13.01525 -12.94305 -12.80548 -12.75168 -12.62413 -12.20247 -12.13686 -12.01493 -11.90501 -11.89379 -11.76868 -11.55039 -11.35790 -11.06189 -10.88074 -10.54146 -10.00979 -9.93729 -9.00014 -8.98729 -7.93285 -5.23043 -0.26725 0.30995 1.48023 1.48932 1.58671 1.75239 2.16240 2.56305 2.60221 2.78244 3.40947 3.50270 3.64901 3.75932 3.78685 3.91825 3.97471 4.03855 4.07725 4.15736 4.19548 4.19764 4.25253 4.40100 4.44166 4.48751 4.56245 4.57885 4.72240 4.75829 4.76906 4.81891 4.90788 4.91953 4.94207 4.95735 5.00022 5.04893 5.06411 5.12929 5.13746 5.17973 5.26353 5.30863 5.35191 5.48462 5.49814 5.52576 5.54810 5.60335 5.85443 6.12978 6.26806 6.54084 7.19208 7.34251 8.07435 8.31623 9.29840 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007323 B = 0.003508 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3822.484640 B = 7979.613784 C =11135.846823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.108 4.108 5 C 0.144 3.856 6 H 0.064 0.936 7 C 0.147 3.853 8 N -0.742 5.742 9 C -0.241 4.241 10 H 0.079 0.921 11 C -0.072 4.072 12 N -0.968 5.968 13 Si 0.971 3.029 14 H -0.264 1.264 15 H -0.293 1.293 16 H -0.298 1.298 17 N -0.702 5.702 18 C 0.559 3.441 19 O -0.581 6.581 20 C -0.163 4.163 21 C -0.063 4.063 22 C -0.124 4.124 23 C 0.110 3.890 24 C -0.161 4.161 25 C -0.041 4.041 26 C -0.106 4.106 27 C 0.050 3.950 28 N -0.506 5.506 29 C 0.025 3.975 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.407 0.593 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.126 0.874 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.113 0.887 50 H 0.098 0.902 51 H 0.068 0.932 52 H 0.101 0.899 53 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 8.847 16.887 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.147 4.147 5 C 0.040 3.960 6 H 0.083 0.917 7 C 0.020 3.980 8 N -0.385 5.385 9 C -0.373 4.373 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.618 5.618 13 Si 0.800 3.200 14 H -0.188 1.188 15 H -0.220 1.220 16 H -0.226 1.226 17 N -0.352 5.352 18 C 0.348 3.652 19 O -0.463 6.463 20 C -0.166 4.166 21 C -0.082 4.082 22 C -0.144 4.144 23 C 0.013 3.987 24 C -0.163 4.163 25 C -0.060 4.060 26 C -0.144 4.144 27 C -0.076 4.076 28 N -0.223 5.223 29 C -0.120 4.120 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.244 0.756 44 H 0.158 0.842 45 H 0.164 0.836 46 H 0.144 0.856 47 H 0.107 0.893 48 H 0.120 0.880 49 H 0.131 0.869 50 H 0.116 0.884 51 H 0.087 0.913 52 H 0.120 0.880 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.338 9.228 16.902 19.398 hybrid contribution -0.536 -1.303 -1.002 1.728 sum 1.802 7.925 15.900 17.857 Atomic orbital electron populations 1.21855 0.95761 1.00885 1.01852 1.21146 0.95633 0.97226 0.97516 1.21773 1.01291 0.94434 1.02086 1.21875 1.01699 0.92418 0.98674 1.21216 0.99360 0.92594 0.82851 0.91749 1.21153 0.97526 0.83893 0.95408 1.42540 1.60398 1.02909 1.32695 1.19657 1.23204 0.89696 1.04726 0.90274 1.25521 1.01536 0.98330 1.01042 1.69845 1.43797 1.11296 1.36908 0.85111 0.77276 0.78823 0.78759 1.18848 1.22034 1.22576 1.45829 1.19579 1.56861 1.12947 1.18408 0.83299 0.79908 0.83540 1.90703 1.25712 1.46975 1.82877 1.19796 0.97882 1.03911 0.95034 1.21224 0.94989 0.94027 0.97947 1.20589 1.00358 1.01618 0.91788 1.19965 0.92755 0.95090 0.90897 1.21214 0.96315 1.01679 0.97122 1.20440 0.98549 0.96237 0.90787 1.21766 0.98673 1.03610 0.90329 1.23360 0.89772 1.00437 0.93994 1.59996 1.51920 1.04575 1.05760 1.22576 1.00152 0.85161 1.04155 0.91625 0.94578 0.92917 0.90799 0.91913 0.91752 0.92757 0.92427 0.90296 0.94120 0.94368 0.79526 0.94202 0.75616 0.84219 0.83634 0.85624 0.89282 0.88009 0.86883 0.88403 0.91276 0.87998 0.95009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.05 71.98 0.65 -3.24 16 2 C -0.10 -2.39 2.78 -10.80 -0.03 -2.42 16 3 C -0.14 -2.71 9.19 71.98 0.66 -2.05 16 4 C -0.11 -3.00 4.47 30.59 0.14 -2.86 16 5 C 0.14 5.02 2.09 44.99 0.09 5.11 16 6 H 0.06 2.63 5.76 -2.39 -0.01 2.61 16 7 C 0.15 5.66 5.45 86.38 0.47 6.13 16 8 N -0.74 -36.99 5.43 -343.47 -1.87 -38.86 16 9 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 10 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 11 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 12 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 13 Si 0.97 45.66 29.55 68.60 2.03 47.68 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 17 N -0.70 -24.16 4.43 -445.72 -1.97 -26.13 16 18 C 0.56 20.74 7.75 86.69 0.67 21.41 16 19 O -0.58 -24.77 16.01 -4.02 -0.06 -24.83 16 20 C -0.16 -5.30 5.88 -20.07 -0.12 -5.42 16 21 C -0.06 -1.79 9.51 22.45 0.21 -1.58 16 22 C -0.12 -3.18 10.05 22.44 0.23 -2.96 16 23 C 0.11 2.72 5.57 38.55 0.21 2.93 16 24 C -0.16 -4.04 6.21 -19.51 -0.12 -4.16 16 25 C -0.04 -1.22 9.58 22.46 0.22 -1.01 16 26 C -0.11 -1.80 6.98 30.69 0.21 -1.58 16 27 C 0.05 0.70 7.00 86.66 0.61 1.31 16 28 N -0.51 -9.85 5.31 -713.34 -3.79 -13.63 16 29 C 0.02 0.40 9.28 127.69 1.18 1.59 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.04 1.13 6.36 -2.39 -0.02 1.12 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.91 6.37 -2.38 -0.02 1.89 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.04 1.56 6.66 -2.39 -0.02 1.55 16 40 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.37 20.40 7.33 -92.71 -0.68 19.72 16 42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.41 12.96 6.68 -92.71 -0.62 12.34 16 44 H 0.14 3.70 6.41 -2.91 -0.02 3.69 16 45 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 46 H 0.13 3.86 7.65 -2.91 -0.02 3.84 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 48 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.11 0.98 7.76 -2.39 -0.02 0.97 16 50 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 51 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 52 H 0.10 1.13 8.10 -2.38 -0.02 1.11 16 53 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -70.66 420.59 0.83 -69.83 By element: Atomic # 1 Polarization: 49.89 SS G_CDS: -0.39 Total: 49.50 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 6.60 Total: -4.70 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -7.34 Total: -137.48 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.06 Total: -24.83 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.66 0.83 -69.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482396009.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.947 kcal (2) G-P(sol) polarization free energy of solvation -70.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds