Wall clock time and date at job start Wed Apr 1 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46879 * 2 1 4 4 C 1.53004 * 109.47274 * 176.59850 * 3 2 1 5 5 H 1.08994 * 109.47147 * 54.71327 * 4 3 2 6 6 C 1.50701 * 109.46978 * 174.71750 * 4 3 2 7 7 O 1.21284 * 119.99892 * 137.96692 * 6 4 3 8 8 N 1.34775 * 120.00330 * 317.96327 * 6 4 3 9 9 C 1.46493 * 120.00482 * 174.89501 * 8 6 4 10 10 H 1.08998 * 108.45045 * 327.31766 * 9 8 6 11 11 C 1.52571 * 108.51630 * 209.77067 * 9 8 6 12 12 C 1.50884 * 109.35443 * 153.72724 * 11 9 8 13 13 C 1.53955 * 110.09118 * 91.89136 * 12 11 9 14 14 N 1.47605 * 112.14188 * 319.43681 * 13 12 11 15 15 C 1.36929 * 118.64390 * 137.87175 * 14 13 12 16 16 H 1.08001 * 119.99969 * 208.06230 * 15 14 13 17 17 C 1.38813 * 120.00441 * 28.05714 * 15 14 13 18 18 N 1.31617 * 119.99779 * 13.43665 * 17 15 14 19 19 Si 1.86793 * 120.00240 * 193.43872 * 17 15 14 20 20 H 1.48506 * 109.47224 * 59.99642 * 19 17 15 21 21 H 1.48496 * 109.47471 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47159 * 300.00131 * 19 17 15 23 23 C 1.44578 * 122.70683 * 317.86474 * 14 13 12 24 24 C 1.47101 * 108.50953 * 85.00183 * 9 8 6 25 25 C 1.50703 * 109.47017 * 294.71486 * 4 3 2 26 26 C 1.38229 * 119.61543 * 274.73058 * 25 4 3 27 27 C 1.38635 * 119.15781 * 179.71057 * 26 25 4 28 28 C 1.38672 * 118.41533 * 0.54918 * 27 26 25 29 29 C 1.38175 * 119.16860 * 359.73256 * 28 27 26 30 30 N 1.31845 * 119.61601 * 94.99882 * 25 4 3 31 31 H 1.08998 * 109.47397 * 299.99814 * 1 2 3 32 32 H 1.08997 * 109.47289 * 60.00332 * 1 2 3 33 33 H 1.09002 * 109.46996 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47397 * 240.00186 * 2 1 3 35 35 H 1.08997 * 109.47289 * 119.99668 * 2 1 3 36 36 H 1.08998 * 109.47308 * 56.59477 * 3 2 1 37 37 H 1.08999 * 109.47250 * 296.59298 * 3 2 1 38 38 H 0.97003 * 119.99459 * 354.90552 * 8 6 4 39 39 H 1.08997 * 109.48820 * 273.69450 * 11 9 8 40 40 H 1.08999 * 109.48929 * 33.74131 * 11 9 8 41 41 H 1.08998 * 109.36326 * 212.07937 * 12 11 9 42 42 H 1.08999 * 109.36743 * 331.70641 * 12 11 9 43 43 H 1.09007 * 108.94407 * 80.12035 * 13 12 11 44 44 H 1.08996 * 108.94726 * 198.83356 * 13 12 11 45 45 H 0.96997 * 120.00240 * 180.02562 * 18 17 15 46 46 H 1.08995 * 109.45412 * 330.68517 * 23 14 13 47 47 H 1.09004 * 109.44440 * 210.76829 * 23 14 13 48 48 H 1.08999 * 109.32964 * 304.31652 * 24 9 8 49 49 H 1.09000 * 109.32475 * 63.80014 * 24 9 8 50 50 H 1.07997 * 120.42272 * 359.97438 * 26 25 4 51 51 H 1.07991 * 120.79016 * 180.25578 * 27 26 25 52 52 H 1.08007 * 120.41634 * 179.75843 * 28 27 26 53 53 H 1.07997 * 119.62200 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5676 1.4435 0.0856 5 1 3.9769 0.8336 -0.7197 6 6 4.0771 2.8557 -0.0449 7 8 4.9759 3.2446 0.6706 8 7 3.5340 3.6866 -0.9566 9 6 3.9505 5.0901 -1.0085 10 1 4.1926 5.4158 0.0031 11 6 2.7783 5.9249 -1.5154 12 6 2.9067 7.3352 -0.9947 13 6 3.6762 8.2043 -2.0060 14 7 4.8157 7.4830 -2.6058 15 6 5.0444 7.6181 -3.9491 16 1 5.5249 6.8216 -4.4978 17 6 4.6586 8.7787 -4.6056 18 7 4.3206 9.8454 -3.9126 19 14 4.6191 8.8266 -6.4725 20 1 3.6718 7.7988 -6.9742 21 1 4.1759 10.1700 -6.9240 22 1 5.9778 8.5487 -7.0037 23 6 5.7004 6.6398 -1.8334 24 6 5.1647 5.1867 -1.8333 25 6 3.9966 0.8754 1.4139 26 6 4.0686 1.7022 2.5193 27 6 4.4586 1.1683 3.7378 28 6 4.7740 -0.1808 3.7966 29 6 4.6844 -0.9439 2.6482 30 7 4.3040 -0.4034 1.5069 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6276 1.9737 0.8579 37 1 1.7273 1.9384 -0.9189 38 1 2.8673 3.3552 -1.5783 39 1 2.7853 5.9375 -2.6053 40 1 1.8430 5.4903 -1.1627 41 1 1.9128 7.7551 -0.8398 42 1 3.4438 7.3229 -0.0463 43 1 2.9946 8.5116 -2.7993 44 1 4.0497 9.0928 -1.4969 45 1 4.0507 10.6563 -4.3713 46 1 5.7504 7.0083 -0.8088 47 1 6.6970 6.6591 -2.2745 48 1 5.9281 4.5207 -1.4310 49 1 4.9312 4.8882 -2.8553 50 1 3.8201 2.7498 2.4357 51 1 4.5199 1.7893 4.6192 52 1 5.0854 -0.6294 4.7284 53 1 4.9279 -1.9954 2.6857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484724073.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:33 Heat of formation + Delta-G solvation = -8.968081 kcal Electronic energy + Delta-G solvation = -31235.488589 eV Core-core repulsion = 27299.397497 eV Total energy + Delta-G solvation = -3936.091092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.89212 -40.65491 -39.18776 -36.78859 -36.39917 -34.07779 -33.39566 -33.31438 -33.04047 -31.78634 -29.93206 -27.85236 -26.12708 -25.65853 -25.00652 -24.46897 -23.40505 -22.11862 -21.53011 -21.24718 -20.74854 -18.60793 -18.20914 -17.92942 -17.27262 -17.10878 -16.91900 -16.38925 -16.08298 -15.83343 -15.61692 -15.36595 -15.23857 -15.09042 -14.83958 -14.37328 -14.25130 -14.16250 -13.93287 -13.80721 -13.58324 -13.36175 -13.15404 -13.02221 -12.91657 -12.68038 -12.42570 -12.36088 -12.21683 -12.09255 -12.04227 -11.93476 -11.73501 -11.52989 -11.48909 -11.48259 -11.33664 -10.84546 -10.59019 -10.42831 -10.38081 -10.04483 -9.84064 -8.61392 -7.82830 -5.31475 0.20286 0.40070 1.48588 1.49288 1.56384 1.59847 2.12596 2.53372 2.90029 3.26097 3.31244 3.50534 3.67998 3.79188 3.91024 3.95203 4.05614 4.11319 4.15304 4.24774 4.27856 4.31783 4.34752 4.46167 4.46531 4.47937 4.67423 4.69062 4.71115 4.78231 4.81083 4.88243 4.94944 4.99581 5.01429 5.03720 5.14036 5.17307 5.25011 5.26578 5.27431 5.32396 5.35359 5.36931 5.49797 5.50995 5.58690 5.61259 5.70565 5.82093 5.84506 6.44027 6.58878 7.04360 7.21734 7.25524 7.96783 8.36713 9.21950 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.002484 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.585374 B =11270.907997 C =11871.654608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.102 4.102 4 C -0.051 4.051 5 H 0.120 0.880 6 C 0.518 3.482 7 O -0.572 6.572 8 N -0.711 5.711 9 C 0.171 3.829 10 H 0.061 0.939 11 C -0.101 4.101 12 C -0.129 4.129 13 C 0.187 3.813 14 N -0.601 5.601 15 C -0.263 4.263 16 H 0.062 0.938 17 C -0.046 4.046 18 N -0.936 5.936 19 Si 0.964 3.036 20 H -0.275 1.275 21 H -0.295 1.295 22 H -0.280 1.280 23 C 0.160 3.840 24 C -0.135 4.135 25 C 0.131 3.869 26 C -0.154 4.154 27 C -0.089 4.089 28 C -0.170 4.170 29 C 0.082 3.918 30 N -0.496 5.496 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.412 0.588 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.045 0.955 44 H -0.010 1.010 45 H 0.249 0.751 46 H 0.035 0.965 47 H 0.034 0.966 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.122 0.878 51 H 0.151 0.849 52 H 0.164 0.836 53 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.944 -22.260 13.408 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.073 4.073 5 H 0.138 0.862 6 C 0.305 3.695 7 O -0.451 6.451 8 N -0.363 5.363 9 C 0.067 3.933 10 H 0.079 0.921 11 C -0.139 4.139 12 C -0.168 4.168 13 C 0.062 3.938 14 N -0.323 5.323 15 C -0.394 4.394 16 H 0.080 0.920 17 C -0.241 4.241 18 N -0.582 5.582 19 Si 0.792 3.208 20 H -0.201 1.201 21 H -0.222 1.222 22 H -0.206 1.206 23 C 0.032 3.968 24 C -0.176 4.176 25 C -0.007 4.007 26 C -0.174 4.174 27 C -0.114 4.114 28 C -0.189 4.189 29 C -0.075 4.075 30 N -0.205 5.205 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.249 0.751 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.009 0.991 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.140 0.860 51 H 0.169 0.831 52 H 0.182 0.818 53 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.426 -22.323 13.147 26.950 hybrid contribution 0.279 1.133 -0.566 1.296 sum -7.148 -21.190 12.582 25.660 Atomic orbital electron populations 1.21757 0.94864 1.02021 1.02122 1.21449 0.96280 0.95267 1.02367 1.21646 0.89601 0.98949 1.03774 1.20184 0.99019 0.92041 0.96085 0.86175 1.20662 0.81740 0.87594 0.79545 1.90709 1.30800 1.77670 1.45947 1.46259 1.43937 1.10144 1.35931 1.19713 0.94254 0.80092 0.99249 0.92051 1.21129 0.96868 0.94451 1.01427 1.21831 1.00572 0.95982 0.98444 1.20815 0.88139 0.90905 0.93916 1.43826 1.29138 1.54201 1.05155 1.19422 1.36200 0.98319 0.85439 0.92001 1.25777 1.01869 0.94640 1.01861 1.70208 1.50900 1.01766 1.35309 0.85405 0.78020 0.76341 0.81026 1.20135 1.22174 1.20606 1.20639 0.92401 0.89549 0.94177 1.21605 0.97538 0.98764 0.99739 1.20524 0.96046 0.89808 0.94324 1.22048 1.00610 1.00804 0.93915 1.21912 0.95399 0.96198 0.97935 1.22462 1.00808 0.94394 1.01260 1.23215 0.95093 1.01542 0.87609 1.67396 1.11629 1.12405 1.29068 0.93027 0.91822 0.92354 0.91270 0.92947 0.91438 0.88876 0.75104 0.92118 0.89493 0.90399 0.92873 0.93644 0.99142 0.94214 0.94695 0.94716 0.93055 0.92749 0.86016 0.83145 0.81806 0.80162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.72 5.79 30.59 0.18 -1.54 16 3 C -0.10 -1.57 4.48 30.60 0.14 -1.44 16 4 C -0.05 -1.08 2.60 -12.28 -0.03 -1.11 16 5 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 6 C 0.52 13.71 6.56 87.66 0.58 14.29 16 7 O -0.57 -19.71 13.42 -3.04 -0.04 -19.75 16 8 N -0.71 -17.23 4.65 -452.05 -2.10 -19.34 16 9 C 0.17 5.27 1.92 43.02 0.08 5.36 16 10 H 0.06 2.10 6.73 -2.39 -0.02 2.08 16 11 C -0.10 -3.06 5.00 29.76 0.15 -2.91 16 12 C -0.13 -4.50 5.71 30.23 0.17 -4.32 16 13 C 0.19 8.82 4.65 86.49 0.40 9.23 16 14 N -0.60 -29.54 2.27 -698.35 -1.58 -31.12 16 15 C -0.26 -14.23 9.43 84.04 0.79 -13.44 16 16 H 0.06 3.30 7.86 -2.91 -0.02 3.28 16 17 C -0.05 -2.54 4.92 84.86 0.42 -2.12 16 18 N -0.94 -54.78 10.98 21.65 0.24 -54.54 16 19 Si 0.96 44.46 29.57 68.60 2.03 46.49 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 C 0.16 6.88 5.65 87.38 0.49 7.38 16 24 C -0.14 -4.89 5.19 29.40 0.15 -4.74 16 25 C 0.13 3.08 4.79 42.56 0.20 3.29 16 26 C -0.15 -3.67 8.29 22.36 0.19 -3.49 16 27 C -0.09 -1.66 10.18 22.47 0.23 -1.43 16 28 C -0.17 -2.59 10.11 22.36 0.23 -2.36 16 29 C 0.08 1.43 11.18 84.67 0.95 2.37 16 30 N -0.50 -11.13 9.51 -183.89 -1.75 -12.88 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.94 6.71 -2.39 -0.02 0.93 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.10 6.67 -2.39 -0.02 1.09 16 38 H 0.41 7.56 7.11 -92.71 -0.66 6.90 16 39 H 0.06 2.15 7.48 -2.39 -0.02 2.13 16 40 H 0.09 2.05 8.05 -2.39 -0.02 2.03 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.05 1.80 7.31 -2.39 -0.02 1.78 16 43 H 0.05 2.39 6.38 -2.38 -0.02 2.37 16 44 H -0.01 -0.51 8.02 -2.39 -0.02 -0.53 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 47 H 0.03 1.55 7.99 -2.39 -0.02 1.53 16 48 H 0.05 1.88 7.72 -2.39 -0.02 1.86 16 49 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.12 3.20 6.51 -2.91 -0.02 3.18 16 51 H 0.15 2.12 8.06 -2.92 -0.02 2.09 16 52 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 53 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -69.18 408.31 3.05 -66.13 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.23 Total: 23.15 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.03 Total: 1.85 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -5.20 Total: -117.88 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.04 Total: -19.75 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.18 3.05 -66.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484724073.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.164 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds