Wall clock time and date at job start Wed Apr 1 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47349 * 2 1 4 4 C 1.53004 * 109.47103 * 185.13751 * 3 2 1 5 5 H 1.08993 * 109.47077 * 54.46918 * 4 3 2 6 6 C 1.50702 * 109.46961 * 174.46975 * 4 3 2 7 7 O 1.21278 * 120.00385 * 130.50258 * 6 4 3 8 8 N 1.34778 * 119.99880 * 310.50228 * 6 4 3 9 9 C 1.46499 * 119.99878 * 174.50880 * 8 6 4 10 10 H 1.08990 * 110.21562 * 36.93401 * 9 8 6 11 11 C 1.50133 * 110.24895 * 159.02006 * 9 8 6 12 12 C 1.54840 * 110.81422 * 216.65480 * 11 9 8 13 13 C 1.54897 * 110.14291 * 321.13177 * 12 11 9 14 14 N 1.43444 * 116.08140 * 318.64412 * 13 12 11 15 15 C 1.36935 * 120.53563 * 271.58790 * 14 13 12 16 16 H 1.08001 * 119.99933 * 325.88581 * 15 14 13 17 17 C 1.38809 * 120.00429 * 145.88508 * 15 14 13 18 18 N 1.31626 * 119.99297 * 357.28212 * 17 15 14 19 19 Si 1.86793 * 120.00429 * 177.28391 * 17 15 14 20 20 H 1.48502 * 109.47247 * 90.00287 * 19 17 15 21 21 H 1.48504 * 109.46987 * 210.00072 * 19 17 15 22 22 H 1.48502 * 109.47060 * 329.99822 * 19 17 15 23 23 C 1.50158 * 118.92436 * 91.56470 * 14 13 12 24 24 C 1.46239 * 107.53586 * 289.58978 * 23 14 13 25 25 C 1.50698 * 109.46996 * 294.46665 * 4 3 2 26 26 C 1.38228 * 119.62029 * 275.25649 * 25 4 3 27 27 C 1.38626 * 119.16238 * 180.27479 * 26 25 4 28 28 C 1.38668 * 118.42017 * 359.47855 * 27 26 25 29 29 C 1.38184 * 119.16516 * 0.25828 * 28 27 26 30 30 N 1.31855 * 119.61855 * 95.00092 * 25 4 3 31 31 H 1.09000 * 109.47213 * 60.00109 * 1 2 3 32 32 H 1.08997 * 109.47161 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47195 * 299.99848 * 1 2 3 34 34 H 1.08998 * 109.47568 * 239.99579 * 2 1 3 35 35 H 1.09000 * 109.47213 * 119.99891 * 2 1 3 36 36 H 1.09006 * 109.47227 * 65.13424 * 3 2 1 37 37 H 1.08998 * 109.46971 * 305.13517 * 3 2 1 38 38 H 0.96999 * 120.00145 * 354.51276 * 8 6 4 39 39 H 1.08996 * 109.20729 * 336.99975 * 11 9 8 40 40 H 1.09003 * 109.20808 * 96.31000 * 11 9 8 41 41 H 1.09000 * 109.35384 * 200.92682 * 12 11 9 42 42 H 1.08992 * 109.35861 * 81.34020 * 12 11 9 43 43 H 1.09004 * 108.15946 * 196.92541 * 13 12 11 44 44 H 1.08998 * 108.00359 * 80.23375 * 13 12 11 45 45 H 0.96997 * 119.99382 * 180.02562 * 18 17 15 46 46 H 1.09011 * 109.84540 * 170.08425 * 23 14 13 47 47 H 1.08995 * 109.84921 * 49.10174 * 23 14 13 48 48 H 1.09004 * 108.52279 * 297.17126 * 24 23 14 49 49 H 1.08996 * 108.52427 * 179.65284 * 24 23 14 50 50 H 1.08007 * 120.41634 * 0.02562 * 26 25 4 51 51 H 1.08002 * 120.79284 * 179.75354 * 27 26 25 52 52 H 1.08002 * 120.42214 * 180.22609 * 28 27 26 53 53 H 1.08002 * 119.62294 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4443 -0.1292 5 1 3.8552 0.8728 -1.0106 6 6 4.0554 2.8626 -0.2657 7 8 4.9625 3.2605 0.4340 8 7 3.4862 3.6889 -1.1656 9 6 3.8794 5.0993 -1.2163 10 1 4.9469 5.1999 -1.0207 11 6 3.5357 5.6867 -2.5545 12 6 4.6178 6.6982 -3.0056 13 6 5.1115 7.5271 -1.7938 14 7 4.1009 7.9615 -0.8731 15 6 3.4480 9.1495 -1.0663 16 1 3.9712 9.9890 -1.4997 17 6 2.1135 9.2749 -0.7052 18 7 1.4610 8.2367 -0.2268 19 14 1.2440 10.9168 -0.8981 20 1 0.6287 10.9955 -2.2474 21 1 0.1858 11.0411 0.1364 22 1 2.2260 12.0190 -0.7367 23 6 3.7703 7.0920 0.3056 24 6 3.0781 5.9075 -0.2009 25 6 4.1735 0.8182 1.0989 26 6 4.3922 1.5918 2.2233 27 6 4.9581 1.0074 3.3458 28 6 5.2743 -0.3419 3.2989 29 6 5.0216 -1.0530 2.1413 30 7 4.4868 -0.4626 1.0901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.7537 1.9291 0.9324 37 1 1.6035 1.9821 -0.8404 38 1 2.8162 3.3499 -1.7797 39 1 3.4646 4.8857 -3.2902 40 1 2.5746 6.1963 -2.4863 41 1 4.1958 7.3688 -3.7542 42 1 5.4586 6.1579 -3.4404 43 1 5.6273 8.4093 -2.1731 44 1 5.8343 6.9236 -1.2448 45 1 0.5284 8.3242 0.0251 46 1 3.1216 7.6333 0.9945 47 1 4.6869 6.7952 0.8153 48 1 2.1461 6.2247 -0.6687 49 1 2.8356 5.2610 0.6425 50 1 4.1292 2.6394 2.2259 51 1 5.1442 1.5882 4.2371 52 1 5.7131 -0.8309 4.1561 53 1 5.2653 -2.1042 2.0965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484724074.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:37 Heat of formation + Delta-G solvation = -1.119726 kcal Electronic energy + Delta-G solvation = -31758.433963 eV Core-core repulsion = 27822.683201 eV Total energy + Delta-G solvation = -3935.750762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.85685 -40.60702 -39.21678 -36.76687 -36.19264 -34.16187 -33.40513 -33.05044 -32.62710 -32.23661 -30.03526 -27.87229 -26.18306 -25.38632 -24.91550 -24.46842 -23.46644 -22.09126 -21.72744 -21.12716 -20.64381 -18.59858 -18.10518 -18.01264 -17.15014 -17.00545 -16.76670 -16.46549 -16.11142 -15.67780 -15.60951 -15.40627 -15.31346 -15.14205 -14.74990 -14.46066 -14.28830 -13.99093 -13.81638 -13.66481 -13.47646 -13.36310 -13.09328 -13.07785 -12.91833 -12.68439 -12.54581 -12.40718 -12.16376 -12.04351 -11.99520 -11.81989 -11.78136 -11.61174 -11.52926 -11.17526 -11.01878 -10.85951 -10.54686 -10.46577 -10.38357 -9.87592 -9.82830 -8.48034 -7.79640 -5.35830 0.20575 0.40375 1.48550 1.50594 1.57978 1.59898 2.17871 2.53816 2.90777 3.25523 3.34817 3.51416 3.64211 3.91047 3.95580 4.03420 4.07920 4.10815 4.15028 4.25215 4.27496 4.29145 4.31899 4.47835 4.56405 4.65558 4.66998 4.70278 4.71490 4.81561 4.89510 4.90166 4.94311 4.97056 5.02463 5.11909 5.22726 5.24818 5.25567 5.25788 5.33936 5.35337 5.36749 5.40088 5.48633 5.56063 5.65771 5.73187 5.76252 5.82806 6.15717 6.51092 6.61818 7.04016 7.21971 7.28961 7.89369 8.46536 9.23403 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.002860 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.987330 B = 9789.009440 C =10191.226688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.102 4.102 4 C -0.048 4.048 5 H 0.129 0.871 6 C 0.516 3.484 7 O -0.571 6.571 8 N -0.705 5.705 9 C 0.162 3.838 10 H 0.066 0.934 11 C -0.103 4.103 12 C -0.131 4.131 13 C 0.150 3.850 14 N -0.601 5.601 15 C -0.265 4.265 16 H 0.057 0.943 17 C -0.032 4.032 18 N -0.915 5.915 19 Si 0.961 3.039 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.278 1.278 23 C 0.178 3.822 24 C -0.116 4.116 25 C 0.129 3.871 26 C -0.154 4.154 27 C -0.092 4.092 28 C -0.168 4.168 29 C 0.083 3.917 30 N -0.490 5.490 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.411 0.589 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.248 0.752 46 H 0.056 0.944 47 H 0.001 0.999 48 H 0.086 0.914 49 H 0.017 0.983 50 H 0.117 0.883 51 H 0.147 0.853 52 H 0.166 0.834 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -20.622 0.836 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.140 4.140 4 C -0.070 4.070 5 H 0.147 0.853 6 C 0.303 3.697 7 O -0.451 6.451 8 N -0.356 5.356 9 C 0.057 3.943 10 H 0.084 0.916 11 C -0.141 4.141 12 C -0.173 4.173 13 C 0.022 3.978 14 N -0.324 5.324 15 C -0.395 4.395 16 H 0.075 0.925 17 C -0.228 4.228 18 N -0.560 5.560 19 Si 0.790 3.210 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.203 1.203 23 C 0.054 3.946 24 C -0.155 4.155 25 C -0.009 4.009 26 C -0.174 4.174 27 C -0.118 4.118 28 C -0.187 4.187 29 C -0.074 4.074 30 N -0.200 5.200 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.248 0.752 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.019 0.981 48 H 0.104 0.896 49 H 0.036 0.964 50 H 0.135 0.865 51 H 0.164 0.836 52 H 0.183 0.817 53 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.884 -20.791 0.656 20.887 hybrid contribution -0.674 1.727 0.713 1.986 sum 1.211 -19.064 1.369 19.151 Atomic orbital electron populations 1.21774 0.95003 1.02135 1.01980 1.21400 0.96098 0.94752 1.02466 1.21621 0.90018 0.99170 1.03197 1.20157 0.97563 0.91422 0.97857 0.85333 1.20714 0.81772 0.87849 0.79410 1.90692 1.30917 1.78003 1.45473 1.46041 1.43305 1.09250 1.37004 1.20090 0.98375 0.79118 0.96680 0.91623 1.21531 0.99664 0.98007 0.94890 1.22700 0.98171 0.97541 0.98848 1.20551 0.90632 0.95906 0.90683 1.44163 1.44687 1.20654 1.22888 1.19331 0.91861 0.89700 1.38647 0.92527 1.25817 0.96715 0.99749 1.00548 1.70013 1.09288 1.29366 1.47286 0.85389 0.78045 0.80574 0.76997 1.21171 1.22111 1.20328 1.19845 0.94353 0.90913 0.89470 1.21155 1.01534 0.95391 0.97444 1.20503 0.96281 0.90065 0.94025 1.22113 1.00004 1.00836 0.94424 1.21898 0.95593 0.95985 0.98333 1.22462 1.01035 0.94434 1.00795 1.23250 0.94360 1.01480 0.88322 1.67397 1.11762 1.10296 1.30514 0.91871 0.91894 0.93483 0.90636 0.93169 0.92660 0.89175 0.75218 0.90625 0.93089 0.93068 0.90771 0.95147 0.95227 0.94235 0.92546 0.98112 0.89589 0.96425 0.86544 0.83564 0.81681 0.79757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.11 -1.95 5.61 30.59 0.17 -1.78 16 3 C -0.10 -2.08 4.55 30.60 0.14 -1.94 16 4 C -0.05 -1.16 2.56 -12.28 -0.03 -1.19 16 5 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 6 C 0.52 15.88 6.69 87.66 0.59 16.47 16 7 O -0.57 -22.27 13.35 -3.02 -0.04 -22.31 16 8 N -0.70 -20.41 4.78 -447.72 -2.14 -22.55 16 9 C 0.16 5.88 2.22 43.91 0.10 5.98 16 10 H 0.07 2.68 5.76 -2.39 -0.01 2.67 16 11 C -0.10 -3.56 5.30 30.30 0.16 -3.40 16 12 C -0.13 -4.67 6.41 31.87 0.20 -4.46 16 13 C 0.15 6.34 5.18 87.59 0.45 6.79 16 14 N -0.60 -29.91 2.58 -707.84 -1.82 -31.73 16 15 C -0.27 -14.28 9.58 84.03 0.81 -13.47 16 16 H 0.06 3.05 7.83 -2.91 -0.02 3.03 16 17 C -0.03 -1.69 5.22 84.86 0.44 -1.25 16 18 N -0.91 -49.95 8.97 21.65 0.19 -49.76 16 19 Si 0.96 43.80 29.55 68.60 2.03 45.83 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 23 C 0.18 8.79 5.23 83.58 0.44 9.23 16 24 C -0.12 -5.07 4.70 28.36 0.13 -4.93 16 25 C 0.13 3.45 4.85 42.55 0.21 3.65 16 26 C -0.15 -4.41 8.25 22.36 0.18 -4.22 16 27 C -0.09 -2.10 10.18 22.47 0.23 -1.87 16 28 C -0.17 -2.98 10.11 22.36 0.23 -2.75 16 29 C 0.08 1.57 11.18 84.67 0.95 2.52 16 30 N -0.49 -11.86 9.78 -183.88 -1.80 -13.66 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.03 7.21 -2.39 -0.02 1.01 16 36 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.09 1.57 6.97 -2.39 -0.02 1.56 16 38 H 0.41 9.18 7.35 -92.71 -0.68 8.49 16 39 H 0.08 2.08 7.81 -2.39 -0.02 2.06 16 40 H 0.05 2.11 6.83 -2.39 -0.02 2.10 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.03 1.27 8.00 -2.39 -0.02 1.25 16 44 H 0.03 1.22 6.88 -2.39 -0.02 1.20 16 45 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 46 H 0.06 3.12 6.35 -2.38 -0.02 3.10 16 47 H 0.00 0.04 8.12 -2.39 -0.02 0.02 16 48 H 0.09 4.21 4.97 -2.38 -0.01 4.20 16 49 H 0.02 0.77 7.90 -2.39 -0.02 0.75 16 50 H 0.12 3.90 6.32 -2.91 -0.02 3.88 16 51 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 52 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 53 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -65.80 403.95 2.74 -63.06 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.22 Total: 29.43 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 6.11 Total: 1.69 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -5.57 Total: -117.70 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -65.80 2.74 -63.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484724074.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.940 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds