Wall clock time and date at job start Wed Apr 1 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47346 * 305.00346 * 4 3 2 6 6 C 1.50699 * 109.47337 * 185.00273 * 4 3 2 7 7 O 1.21281 * 119.99798 * 239.99780 * 6 4 3 8 8 N 1.34773 * 120.00011 * 60.00011 * 6 4 3 9 9 C 1.46505 * 120.00165 * 180.02562 * 8 6 4 10 10 H 1.08998 * 110.88107 * 328.88134 * 9 8 6 11 11 C 1.54909 * 111.00215 * 92.80355 * 9 8 6 12 12 N 1.47423 * 104.83507 * 81.06608 * 11 9 8 13 13 C 1.36937 * 125.65042 * 204.08100 * 12 11 9 14 14 H 1.08000 * 119.99561 * 180.02562 * 13 12 11 15 15 C 1.38811 * 119.99923 * 0.05735 * 13 12 11 16 16 N 1.31623 * 120.00251 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99966 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46993 * 59.99412 * 17 15 13 19 19 H 1.48498 * 109.47321 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46755 * 299.99698 * 17 15 13 21 21 C 1.47022 * 108.69694 * 24.12737 * 12 11 9 22 22 C 1.54319 * 107.27890 * 358.94230 * 21 12 11 23 23 C 1.52998 * 110.72319 * 219.44824 * 22 21 12 24 24 C 1.52996 * 110.87439 * 96.23642 * 22 21 12 25 25 C 1.50705 * 109.47390 * 64.99953 * 4 3 2 26 26 C 1.38227 * 119.61494 * 85.00048 * 25 4 3 27 27 C 1.38624 * 119.16285 * 179.97438 * 26 25 4 28 28 C 1.38677 * 118.41832 * 359.97438 * 27 26 25 29 29 C 1.38188 * 119.16334 * 359.97438 * 28 27 26 30 30 N 1.31851 * 119.61922 * 264.73196 * 25 4 3 31 31 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 32 32 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 34 34 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 35 35 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 36 36 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 37 37 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 38 38 H 0.97001 * 120.00162 * 359.97438 * 8 6 4 39 39 H 1.08998 * 110.36751 * 199.91148 * 11 9 8 40 40 H 1.09006 * 110.36752 * 322.22811 * 11 9 8 41 41 H 0.96999 * 119.99867 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.87976 * 239.52060 * 21 12 11 43 43 H 1.08997 * 110.00880 * 118.43654 * 21 12 11 44 44 H 1.08998 * 109.47045 * 173.52056 * 23 22 21 45 45 H 1.09000 * 109.46628 * 293.52112 * 23 22 21 46 46 H 1.09005 * 109.47393 * 53.51515 * 23 22 21 47 47 H 1.08999 * 109.47543 * 306.39663 * 24 22 21 48 48 H 1.09003 * 109.46814 * 66.39689 * 24 22 21 49 49 H 1.08997 * 109.47106 * 186.39069 * 24 22 21 50 50 H 1.07998 * 120.41926 * 359.97438 * 26 25 4 51 51 H 1.07996 * 120.79393 * 180.02562 * 27 26 25 52 52 H 1.08000 * 120.41912 * 179.97438 * 28 27 26 53 53 H 1.07999 * 119.61729 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0723 2.8579 0.1233 7 8 4.7692 3.3325 -0.7485 8 7 3.7472 3.5963 1.2028 9 6 4.2351 4.9725 1.3230 10 1 5.2050 5.0845 0.8384 11 6 3.2067 5.9784 0.7484 12 7 2.2149 6.1601 1.8239 13 6 0.9174 6.5631 1.6532 14 1 0.2672 6.6668 2.5093 15 6 0.4376 6.8375 0.3799 16 7 1.2300 6.7109 -0.6634 17 14 -1.3323 7.3878 0.1472 18 1 -1.5609 8.6494 0.8964 19 1 -1.5941 7.6157 -1.2967 20 1 -2.2486 6.3363 0.6570 21 6 2.8502 5.8382 3.1101 22 6 4.3023 5.4109 2.8099 23 6 4.7171 4.2388 3.7015 24 6 5.2640 6.5880 2.9841 25 6 4.0718 0.8423 -1.2887 26 6 4.2003 1.6405 -2.4098 27 6 4.6634 1.0787 -3.5895 28 6 4.9818 -0.2709 -3.5973 29 6 4.8286 -1.0057 -2.4370 30 7 4.3883 -0.4369 -1.3316 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6765 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 3.1895 3.2169 1.8999 39 1 3.6922 6.9261 0.5158 40 1 2.7302 5.5670 -0.1415 41 1 0.8947 6.9030 -1.5532 42 1 2.3154 5.0203 3.5932 43 1 2.8481 6.7154 3.7570 44 1 5.6997 3.8796 3.3957 45 1 4.7578 4.5688 4.7396 46 1 3.9893 3.4332 3.6046 47 1 4.9199 7.4303 2.3840 48 1 5.2957 6.8789 4.0341 49 1 6.2616 6.2934 2.6586 50 1 3.9432 2.6886 -2.3673 51 1 4.7743 1.6780 -4.4811 52 1 5.3450 -0.7419 -4.4988 53 1 5.0749 -2.0572 -2.4348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485576903.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:02 Heat of formation + Delta-G solvation = -2.189576 kcal Electronic energy + Delta-G solvation = -32240.481644 eV Core-core repulsion = 28304.684490 eV Total energy + Delta-G solvation = -3935.797154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.86786 -40.75452 -39.38976 -36.74429 -35.65687 -34.48729 -33.38761 -32.98153 -32.58342 -30.53078 -29.45012 -27.99163 -27.38032 -26.07269 -25.06640 -24.44023 -23.51959 -22.25517 -21.91028 -21.07461 -20.04492 -18.68776 -18.18314 -17.99143 -17.30264 -16.87559 -16.68552 -16.43517 -16.14654 -15.69506 -15.48773 -15.31662 -15.22346 -14.69280 -14.58558 -14.36142 -14.32932 -13.89913 -13.82136 -13.69743 -13.63517 -13.37197 -13.05538 -13.02449 -12.98588 -12.79346 -12.60894 -12.54450 -12.40525 -12.16863 -12.06087 -11.99993 -11.76476 -11.72971 -11.57624 -11.42722 -11.34500 -10.86288 -10.74263 -10.47116 -10.35813 -9.90897 -9.81030 -8.82035 -7.73557 -5.18044 0.21893 0.42359 1.45265 1.47447 1.53853 1.62529 2.19878 2.49960 2.91969 3.26700 3.36125 3.54789 3.61073 3.71756 3.92200 3.96840 3.99787 4.05582 4.09120 4.10716 4.23650 4.28685 4.32515 4.43811 4.47480 4.54000 4.64773 4.68643 4.75756 4.79603 4.84185 4.89514 4.92223 4.94154 4.96679 5.02198 5.06532 5.11933 5.20338 5.21974 5.26915 5.31350 5.33730 5.34557 5.39558 5.46008 5.50741 5.54800 5.72139 5.84899 5.86372 6.33364 6.61999 7.05176 7.11895 7.30388 7.81698 8.45362 9.26531 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.004023 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.428328 B = 6958.275645 C = 8128.205845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.098 4.098 4 C -0.045 4.045 5 H 0.132 0.868 6 C 0.516 3.484 7 O -0.572 6.572 8 N -0.688 5.688 9 C 0.136 3.864 10 H 0.080 0.920 11 C 0.157 3.843 12 N -0.616 5.616 13 C -0.232 4.232 14 H 0.083 0.917 15 C -0.063 4.063 16 N -0.947 5.947 17 Si 0.971 3.029 18 H -0.280 1.280 19 H -0.300 1.300 20 H -0.275 1.275 21 C 0.139 3.861 22 C -0.074 4.074 23 C -0.124 4.124 24 C -0.126 4.126 25 C 0.127 3.873 26 C -0.155 4.155 27 C -0.095 4.095 28 C -0.166 4.166 29 C 0.082 3.918 30 N -0.488 5.488 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.407 0.593 39 H -0.017 1.017 40 H 0.071 0.929 41 H 0.242 0.758 42 H 0.036 0.964 43 H 0.023 0.977 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.033 0.967 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.120 0.880 51 H 0.145 0.855 52 H 0.167 0.833 53 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 -16.412 2.964 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.137 4.137 4 C -0.067 4.067 5 H 0.149 0.851 6 C 0.302 3.698 7 O -0.453 6.453 8 N -0.337 5.337 9 C 0.030 3.970 10 H 0.098 0.902 11 C 0.030 3.970 12 N -0.341 5.341 13 C -0.361 4.361 14 H 0.101 0.899 15 C -0.255 4.255 16 N -0.597 5.597 17 Si 0.800 3.200 18 H -0.206 1.206 19 H -0.227 1.227 20 H -0.201 1.201 21 C 0.014 3.986 22 C -0.076 4.076 23 C -0.181 4.181 24 C -0.184 4.184 25 C -0.010 4.010 26 C -0.175 4.175 27 C -0.121 4.121 28 C -0.185 4.185 29 C -0.075 4.075 30 N -0.198 5.198 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.244 0.756 39 H 0.000 1.000 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.138 0.862 51 H 0.163 0.837 52 H 0.185 0.815 53 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.433 -16.501 2.988 18.343 hybrid contribution -1.186 1.652 -1.221 2.372 sum 6.248 -14.849 1.766 16.207 Atomic orbital electron populations 1.21772 0.95393 1.02191 1.01564 1.21400 0.95855 0.94323 1.02826 1.21519 0.90537 0.99142 1.02471 1.20077 0.97574 0.91831 0.97228 0.85060 1.20672 0.79669 0.88183 0.81234 1.90639 1.40355 1.74126 1.40148 1.45614 1.52282 1.13148 1.22667 1.22181 0.96747 0.81385 0.96685 0.90223 1.21934 0.88525 0.93212 0.93304 1.44649 1.08064 1.79177 1.02254 1.19374 0.86934 1.36851 0.92924 0.89948 1.25521 1.01669 1.02898 0.95441 1.70091 1.35355 1.56318 0.97888 0.85253 0.80330 0.78389 0.75991 1.20610 1.22651 1.20062 1.21623 0.91604 0.97356 0.88028 1.21826 0.95039 0.97418 0.93283 1.21684 1.01441 0.95804 0.99206 1.21683 0.98149 0.96089 1.02448 1.20438 0.96541 0.89995 0.94019 1.22329 0.99773 1.01219 0.94161 1.21907 0.95996 0.96257 0.97919 1.22472 1.00766 0.94133 1.01169 1.23268 0.94980 1.01534 0.87743 1.67386 1.11417 1.10840 1.30112 0.94117 0.91212 0.92412 0.92658 0.90037 0.93904 0.90353 0.75603 0.99962 0.91078 0.94839 0.94592 0.95854 0.91781 0.90527 0.92130 0.94813 0.90265 0.91418 0.86249 0.83745 0.81541 0.79515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.11 -2.48 5.72 30.59 0.17 -2.30 16 3 C -0.10 -2.78 4.62 30.59 0.14 -2.64 16 4 C -0.05 -1.31 2.52 -12.29 -0.03 -1.34 16 5 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 6 C 0.52 18.33 6.94 87.66 0.61 18.94 16 7 O -0.57 -24.43 12.75 -3.03 -0.04 -24.47 16 8 N -0.69 -23.22 4.41 -435.96 -1.92 -25.14 16 9 C 0.14 5.19 2.67 46.38 0.12 5.31 16 10 H 0.08 3.18 7.44 -2.39 -0.02 3.16 16 11 C 0.16 7.84 5.28 86.86 0.46 8.30 16 12 N -0.62 -30.42 3.39 -692.00 -2.35 -32.77 16 13 C -0.23 -12.66 10.27 84.03 0.86 -11.80 16 14 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 15 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 16 N -0.95 -57.43 10.09 21.65 0.22 -57.21 16 17 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.14 5.26 6.41 86.73 0.56 5.82 16 22 C -0.07 -2.31 0.80 -51.00 -0.04 -2.35 16 23 C -0.12 -2.79 8.07 71.98 0.58 -2.21 16 24 C -0.13 -3.61 8.41 71.98 0.61 -3.00 16 25 C 0.13 3.88 4.88 42.55 0.21 4.09 16 26 C -0.15 -5.11 8.27 22.36 0.18 -4.93 16 27 C -0.09 -2.46 10.18 22.47 0.23 -2.23 16 28 C -0.17 -3.31 10.11 22.36 0.23 -3.09 16 29 C 0.08 1.72 11.18 84.67 0.95 2.66 16 30 N -0.49 -13.04 9.63 -183.88 -1.77 -14.81 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.39 6.90 -2.39 -0.02 1.37 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 2.18 7.43 -2.39 -0.02 2.17 16 38 H 0.41 12.01 6.54 -92.71 -0.61 11.40 16 39 H -0.02 -0.97 7.81 -2.39 -0.02 -0.99 16 40 H 0.07 4.19 5.87 -2.38 -0.01 4.18 16 41 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.04 1.28 7.77 -2.38 -0.02 1.26 16 43 H 0.02 0.90 7.85 -2.39 -0.02 0.88 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 1.28 6.49 -2.38 -0.02 1.27 16 47 H 0.03 1.15 7.59 -2.39 -0.02 1.13 16 48 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.12 4.75 5.94 -2.91 -0.02 4.74 16 51 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 52 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 53 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -71.89 412.20 3.46 -68.43 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: 0.28 Total: 34.61 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 7.01 Total: 3.51 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -5.82 Total: -129.93 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.04 Total: -24.47 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -71.89 3.46 -68.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485576903.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.239 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds