Wall clock time and date at job start Wed Apr 1 2020 03:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47329 * 2 1 4 4 C 1.53001 * 109.47331 * 120.00604 * 2 1 3 5 5 H 1.09008 * 109.46604 * 296.21194 * 4 2 1 6 6 C 1.50694 * 109.47165 * 176.21448 * 4 2 1 7 7 O 1.21282 * 119.99973 * 260.90324 * 6 4 2 8 8 N 1.34780 * 119.99965 * 80.90970 * 6 4 2 9 9 C 1.46503 * 119.99691 * 184.04299 * 8 6 4 10 10 H 1.08997 * 110.88873 * 38.72705 * 9 8 6 11 11 C 1.54903 * 111.00202 * 274.83744 * 9 8 6 12 12 N 1.47428 * 104.83411 * 278.93677 * 11 9 8 13 13 C 1.36938 * 125.64487 * 155.83694 * 12 11 9 14 14 H 1.08007 * 120.00407 * 330.90082 * 13 12 11 15 15 C 1.38811 * 120.00093 * 150.90431 * 13 12 11 16 16 N 1.31617 * 120.00431 * 165.14249 * 15 13 12 17 17 Si 1.86801 * 119.99539 * 345.13600 * 15 13 12 18 18 H 1.48504 * 109.46969 * 84.38468 * 17 15 13 19 19 H 1.48509 * 109.47068 * 204.37843 * 17 15 13 20 20 H 1.48495 * 109.47393 * 324.38207 * 17 15 13 21 21 C 1.47014 * 108.70450 * 335.87035 * 12 11 9 22 22 C 1.54428 * 107.28164 * 1.06411 * 21 12 11 23 23 C 1.52996 * 110.72016 * 263.84409 * 22 21 12 24 24 C 1.53002 * 110.76256 * 140.54050 * 22 21 12 25 25 C 1.50693 * 109.47265 * 56.21033 * 4 2 1 26 26 C 1.38676 * 120.42164 * 240.02400 * 25 4 2 27 27 C 1.38630 * 118.41850 * 179.97438 * 26 25 4 28 28 C 1.38221 * 119.16344 * 0.02562 * 27 26 25 29 29 N 1.31855 * 120.76746 * 359.72071 * 28 27 26 30 30 C 1.31882 * 121.72039 * 0.57290 * 29 28 27 31 31 H 1.09001 * 109.47116 * 299.99705 * 1 2 3 32 32 H 1.08996 * 109.47041 * 59.99573 * 1 2 3 33 33 H 1.08997 * 109.47044 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47116 * 240.00295 * 2 1 3 35 35 H 1.08995 * 109.47055 * 172.57221 * 3 2 1 36 36 H 1.08999 * 109.46838 * 292.57168 * 3 2 1 37 37 H 1.09000 * 109.46668 * 52.57554 * 3 2 1 38 38 H 0.97001 * 120.00114 * 4.03302 * 8 6 4 39 39 H 1.08999 * 110.36821 * 37.78231 * 11 9 8 40 40 H 1.09004 * 110.36682 * 159.99098 * 11 9 8 41 41 H 0.97000 * 120.00302 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.87908 * 120.47131 * 21 12 11 43 43 H 1.08995 * 109.88326 * 241.48563 * 21 12 11 44 44 H 1.08999 * 109.47030 * 173.46537 * 23 22 21 45 45 H 1.09001 * 109.47266 * 293.46397 * 23 22 21 46 46 H 1.08995 * 109.47708 * 53.46677 * 23 22 21 47 47 H 1.08995 * 109.46845 * 306.45772 * 24 22 21 48 48 H 1.08997 * 109.47180 * 66.45969 * 24 22 21 49 49 H 1.09004 * 109.46636 * 186.45920 * 24 22 21 50 50 H 1.07995 * 120.78555 * 359.95973 * 26 25 4 51 51 H 1.07996 * 120.41645 * 180.02562 * 27 26 25 52 52 H 1.08009 * 119.61713 * 180.02562 * 28 27 26 53 53 H 1.08004 * 119.61654 * 179.71164 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.7331 -0.1698 2.1379 6 6 3.5441 -0.8031 1.2031 7 8 4.0848 -1.8234 0.8324 8 7 4.2882 0.2576 1.5740 9 6 5.7469 0.2099 1.4456 10 1 6.0398 -0.3026 0.5292 11 6 6.3918 -0.4577 2.6857 12 7 6.4446 0.6077 3.7033 13 6 6.4880 0.4155 5.0584 14 1 6.0331 -0.4618 5.4944 15 6 7.1165 1.3483 5.8719 16 7 6.9147 1.3295 7.1724 17 14 8.2490 2.6301 5.1209 18 1 7.4437 3.7822 4.6418 19 1 9.2181 3.0955 6.1454 20 1 8.9853 2.0317 3.9786 21 6 6.4420 1.9106 3.0223 22 6 6.3573 1.6351 1.5051 23 6 7.7504 1.6542 0.8729 24 6 5.4366 2.6475 0.8206 25 6 1.4626 -2.1125 1.2969 26 6 0.6740 -2.5091 2.3665 27 6 0.1637 -3.7980 2.3677 28 6 0.4561 -4.6392 1.3106 29 7 1.2057 -4.2264 0.3075 30 6 1.7125 -3.0092 0.2756 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1219 1.4453 0.1328 36 1 1.7892 1.9165 -0.9490 37 1 1.5723 1.9932 0.8161 38 1 3.8581 1.0527 1.9258 39 1 5.7747 -1.2856 3.0348 40 1 7.3964 -0.8081 2.4485 41 1 7.3536 1.9816 7.7408 42 1 5.5785 2.4941 3.3417 43 1 7.3601 2.4510 3.2525 44 1 7.6804 1.3444 -0.1698 45 1 8.1596 2.6631 0.9255 46 1 8.4037 0.9685 1.4124 47 1 4.4695 2.6567 1.3231 48 1 5.8838 3.6400 0.8750 49 1 5.3009 2.3667 -0.2239 50 1 0.4628 -1.8300 3.1792 51 1 -0.4545 -4.1406 3.1843 52 1 0.0620 -5.6448 1.3039 53 1 2.3259 -2.7082 -0.5608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485578471.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:20 Heat of formation + Delta-G solvation = -1.618020 kcal Electronic energy + Delta-G solvation = -32368.972401 eV Core-core repulsion = 28433.200031 eV Total energy + Delta-G solvation = -3935.772370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.97812 -40.93042 -39.61118 -37.15715 -35.76080 -34.47320 -33.46655 -33.38328 -32.31778 -30.35264 -28.72335 -27.95775 -27.81705 -27.54662 -25.25136 -24.57572 -23.54842 -22.58194 -21.58430 -20.97467 -20.23580 -19.13778 -18.29196 -18.03143 -17.59876 -17.12771 -16.89643 -16.25250 -16.21052 -15.70408 -15.58821 -15.34957 -15.13010 -14.88785 -14.66437 -14.39638 -14.25171 -14.20224 -13.95324 -13.69718 -13.63382 -13.42275 -13.38942 -13.25285 -12.99403 -12.93641 -12.88255 -12.83498 -12.62025 -12.31465 -12.05714 -11.85348 -11.77835 -11.75613 -11.66060 -11.62523 -11.16829 -10.92597 -10.79513 -10.54757 -10.37262 -10.03420 -9.85699 -8.91424 -8.22115 -5.58916 0.17961 0.37513 1.26371 1.36644 1.47379 1.62908 2.18155 2.37078 2.91993 3.04994 3.26669 3.41226 3.43265 3.63309 3.72020 3.74166 3.87920 3.93372 4.02318 4.10863 4.12187 4.22678 4.26787 4.33824 4.38786 4.49251 4.53310 4.64402 4.68672 4.72823 4.75115 4.83495 4.86266 4.86540 4.89947 4.92621 5.00870 5.02986 5.04097 5.05441 5.18261 5.20118 5.23847 5.30476 5.31685 5.40537 5.44205 5.50297 5.57572 5.72526 5.80498 6.07829 6.56030 6.74969 7.06310 7.25706 7.48367 8.08791 8.98844 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003511 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.294228 B = 7973.270341 C = 8889.395530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 C -0.164 4.164 4 C -0.053 4.053 5 H 0.115 0.885 6 C 0.520 3.480 7 O -0.573 6.573 8 N -0.697 5.697 9 C 0.155 3.845 10 H 0.103 0.897 11 C 0.122 3.878 12 N -0.618 5.618 13 C -0.236 4.236 14 H 0.043 0.957 15 C -0.030 4.030 16 N -0.959 5.959 17 Si 0.963 3.037 18 H -0.266 1.266 19 H -0.313 1.313 20 H -0.267 1.267 21 C 0.118 3.882 22 C -0.073 4.073 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.078 4.078 27 C -0.173 4.173 28 C 0.081 3.919 29 N -0.517 5.517 30 C 0.119 3.881 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.409 0.591 39 H 0.023 0.977 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.036 0.964 43 H 0.017 0.983 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.152 0.848 51 H 0.164 0.836 52 H 0.177 0.823 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.872 1.717 -18.326 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 C -0.222 4.222 4 C -0.075 4.075 5 H 0.133 0.867 6 C 0.307 3.693 7 O -0.452 6.452 8 N -0.349 5.349 9 C 0.049 3.951 10 H 0.121 0.879 11 C -0.004 4.004 12 N -0.345 5.345 13 C -0.365 4.365 14 H 0.061 0.939 15 C -0.225 4.225 16 N -0.605 5.605 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.242 1.242 20 H -0.193 1.193 21 C -0.006 4.006 22 C -0.074 4.074 23 C -0.191 4.191 24 C -0.188 4.188 25 C -0.125 4.125 26 C -0.104 4.104 27 C -0.192 4.192 28 C -0.075 4.075 29 N -0.226 5.226 30 C -0.038 4.038 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.248 0.752 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.034 0.966 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.170 0.830 51 H 0.181 0.819 52 H 0.194 0.806 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.283 0.481 -19.065 23.827 hybrid contribution 0.703 0.931 1.677 2.043 sum -13.580 1.411 -17.388 22.108 Atomic orbital electron populations 1.21785 0.93132 1.01531 1.03118 1.21008 0.97201 0.96574 0.94388 1.22166 1.01990 0.94274 1.03733 1.20375 0.89741 0.94185 1.03233 0.86719 1.20809 0.90038 0.82422 0.75983 1.90695 1.74640 1.30830 1.49013 1.45976 1.06280 1.18177 1.64426 1.21952 0.79959 0.96143 0.97081 0.87882 1.22092 0.97217 0.91478 0.89641 1.44670 1.87304 1.01583 1.00965 1.18448 1.29234 1.08084 0.80780 0.93911 1.25879 0.99741 1.01643 0.95212 1.69905 1.46502 1.39111 1.04981 0.85670 0.79360 0.79419 0.76200 1.19158 1.24193 1.19324 1.22033 0.98062 0.88185 0.92271 1.21856 0.97744 0.94426 0.93360 1.21771 0.93729 1.02481 1.01155 1.21811 0.98208 0.97873 1.00910 1.20395 0.99446 0.96290 0.96397 1.21852 0.94481 0.97093 0.96999 1.22427 1.01835 0.94217 1.00726 1.23258 0.93861 1.01019 0.89397 1.67695 1.10224 1.16948 1.27760 1.22523 0.94716 0.88631 0.97890 0.91392 0.91066 0.93847 0.91363 0.91910 0.90683 0.91028 0.75230 0.95892 0.95337 0.92729 0.94579 0.96599 0.89593 0.91189 0.94306 0.91799 0.91070 0.89861 0.82993 0.81878 0.80571 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.89 71.98 0.64 -1.21 16 2 C -0.07 -1.15 2.27 -10.79 -0.02 -1.18 16 3 C -0.16 -2.08 8.78 71.98 0.63 -1.45 16 4 C -0.05 -1.12 1.98 -12.29 -0.02 -1.15 16 5 H 0.11 2.08 7.93 -2.38 -0.02 2.06 16 6 C 0.52 14.61 6.51 87.65 0.57 15.18 16 7 O -0.57 -20.55 14.41 -3.03 -0.04 -20.59 16 8 N -0.70 -18.64 3.36 -435.96 -1.47 -20.11 16 9 C 0.15 4.72 2.51 46.38 0.12 4.83 16 10 H 0.10 3.01 7.73 -2.39 -0.02 2.99 16 11 C 0.12 5.05 6.61 86.85 0.57 5.62 16 12 N -0.62 -29.32 3.09 -691.79 -2.14 -31.46 16 13 C -0.24 -13.80 10.58 84.03 0.89 -12.91 16 14 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 15 C -0.03 -1.75 5.47 84.86 0.46 -1.29 16 16 N -0.96 -60.67 13.97 21.65 0.30 -60.37 16 17 Si 0.96 47.03 24.39 68.60 1.67 48.70 16 18 H -0.27 -11.92 6.96 99.48 0.69 -11.23 16 19 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 20 H -0.27 -12.58 6.83 99.48 0.68 -11.90 16 21 C 0.12 4.62 4.76 86.77 0.41 5.03 16 22 C -0.07 -2.02 0.81 -50.96 -0.04 -2.06 16 23 C -0.13 -3.37 8.41 71.98 0.61 -2.77 16 24 C -0.13 -2.48 7.45 71.98 0.54 -1.95 16 25 C -0.12 -2.93 3.17 -19.77 -0.06 -2.99 16 26 C -0.08 -1.63 9.81 22.47 0.22 -1.41 16 27 C -0.17 -3.26 10.11 22.36 0.23 -3.03 16 28 C 0.08 1.76 11.18 84.69 0.95 2.71 16 29 N -0.52 -14.41 10.36 -195.83 -2.03 -16.44 16 30 C 0.12 3.27 9.09 84.67 0.77 4.04 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.04 0.70 7.11 -2.39 -0.02 0.68 16 34 H 0.07 1.23 7.55 -2.39 -0.02 1.21 16 35 H 0.06 0.90 4.17 -2.39 -0.01 0.89 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.41 9.60 5.88 -92.71 -0.55 9.06 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.03 1.21 7.81 -2.38 -0.02 1.19 16 41 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.04 1.41 7.77 -2.38 -0.02 1.40 16 43 H 0.02 0.69 2.91 -2.39 -0.01 0.69 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.04 1.17 7.58 -2.39 -0.02 1.15 16 47 H 0.06 1.13 5.72 -2.39 -0.01 1.11 16 48 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.15 2.49 8.00 -2.91 -0.02 2.46 16 51 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 52 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 53 H 0.14 4.05 7.05 -2.91 -0.02 4.03 16 Total: -1.00 -77.10 401.83 4.07 -73.03 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.32 Total: 23.19 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 7.45 Total: 4.03 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.33 Total: -128.37 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.04 Total: -20.59 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.67 Total: 48.70 kcal Total: -77.10 4.07 -73.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485578471.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.416 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds