Wall clock time and date at job start Wed Apr 1 2020 03:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47610 * 2 1 4 4 C 1.53003 * 109.47207 * 120.00361 * 2 1 3 5 5 H 1.09002 * 109.46619 * 294.33282 * 4 2 1 6 6 C 1.50700 * 109.47282 * 174.33266 * 4 2 1 7 7 O 1.21277 * 120.00042 * 265.23240 * 6 4 2 8 8 N 1.34776 * 119.99767 * 85.23111 * 6 4 2 9 9 C 1.46503 * 119.99609 * 175.21720 * 8 6 4 10 10 H 1.08998 * 110.88802 * 328.88409 * 9 8 6 11 11 C 1.54914 * 111.00107 * 92.80840 * 9 8 6 12 12 N 1.47423 * 104.83176 * 81.06190 * 11 9 8 13 13 C 1.36936 * 125.64655 * 204.16974 * 12 11 9 14 14 H 1.08001 * 120.00240 * 179.97438 * 13 12 11 15 15 C 1.38820 * 119.99976 * 359.95096 * 13 12 11 16 16 N 1.31617 * 119.99828 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47375 * 90.00090 * 17 15 13 19 19 H 1.48500 * 109.47229 * 210.00162 * 17 15 13 20 20 H 1.48504 * 109.47014 * 329.99969 * 17 15 13 21 21 C 1.47018 * 108.70354 * 24.12862 * 12 11 9 22 22 C 1.54320 * 107.27378 * 358.93833 * 21 12 11 23 23 C 1.52998 * 110.72178 * 219.44318 * 22 21 12 24 24 C 1.52998 * 110.87080 * 96.23979 * 22 21 12 25 25 C 1.50701 * 109.47031 * 54.33243 * 4 2 1 26 26 C 1.38674 * 120.41337 * 240.00270 * 25 4 2 27 27 C 1.38633 * 118.41575 * 180.02562 * 26 25 4 28 28 C 1.38226 * 119.16289 * 359.97438 * 27 26 25 29 29 N 1.31855 * 120.76236 * 0.02562 * 28 27 26 30 30 C 1.31881 * 121.72675 * 359.70629 * 29 28 27 31 31 H 1.08997 * 109.46661 * 59.99866 * 1 2 3 32 32 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46855 * 300.00186 * 1 2 3 34 34 H 1.09001 * 109.46855 * 239.99814 * 2 1 3 35 35 H 1.08995 * 109.46850 * 176.56893 * 3 2 1 36 36 H 1.08994 * 109.46730 * 296.56963 * 3 2 1 37 37 H 1.09002 * 109.46709 * 56.56932 * 3 2 1 38 38 H 0.96999 * 120.00020 * 355.22295 * 8 6 4 39 39 H 1.08999 * 110.36099 * 199.90051 * 11 9 8 40 40 H 1.09002 * 110.36616 * 322.21935 * 11 9 8 41 41 H 0.97006 * 119.99805 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.88067 * 239.51849 * 21 12 11 43 43 H 1.09004 * 110.00975 * 118.43353 * 21 12 11 44 44 H 1.08997 * 109.47055 * 173.51871 * 23 22 21 45 45 H 1.08998 * 109.47108 * 293.52489 * 23 22 21 46 46 H 1.08997 * 109.46835 * 53.52194 * 23 22 21 47 47 H 1.08999 * 109.47400 * 306.39086 * 24 22 21 48 48 H 1.09011 * 109.47229 * 66.39407 * 24 22 21 49 49 H 1.09002 * 109.47508 * 186.38647 * 24 22 21 50 50 H 1.07998 * 120.79459 * 0.02562 * 26 25 4 51 51 H 1.08003 * 120.41955 * 180.02562 * 27 26 25 52 52 H 1.07996 * 119.61562 * 179.97438 * 28 27 26 53 53 H 1.08004 * 119.62293 * 180.31087 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7619 -0.1522 2.1363 6 6 3.5405 -0.8440 1.1811 7 8 4.0469 -1.8537 0.7397 8 7 4.3195 0.1684 1.6107 9 6 5.7756 0.0095 1.6426 10 1 6.0492 -1.0283 1.8329 11 6 6.4190 0.5225 0.3301 12 7 6.5030 1.9848 0.4974 13 6 6.5555 2.9025 -0.5175 14 1 6.6157 3.9566 -0.2900 15 6 6.5319 2.4780 -1.8390 16 7 6.4595 1.1935 -2.1164 17 14 6.6028 3.7300 -3.2236 18 1 8.0194 3.9829 -3.5902 19 1 5.8722 3.2039 -4.4046 20 1 5.9730 4.9984 -2.7767 21 6 6.5201 2.2946 1.9345 22 6 6.4153 0.9550 2.6934 23 6 5.5088 1.0959 3.9178 24 6 7.8005 0.4508 3.1030 25 6 1.4264 -2.0959 1.3213 26 6 0.6447 -2.4596 2.4074 27 6 0.1010 -3.7347 2.4314 28 6 0.3539 -4.5947 1.3792 29 7 1.1023 -4.2144 0.3623 30 6 1.6313 -3.0078 0.3035 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1283 1.4429 0.0615 36 1 1.7279 1.9382 -0.9191 37 1 1.6275 1.9737 0.8577 38 1 3.9162 1.0022 1.8988 39 1 7.4146 0.0972 0.2042 40 1 5.7887 0.2740 -0.5238 41 1 6.4426 0.8969 -3.0398 42 1 5.6717 2.9309 2.1866 43 1 7.4510 2.7974 2.1966 44 1 5.3564 0.1167 4.3717 45 1 5.9768 1.7631 4.6415 46 1 4.5472 1.5083 3.6123 47 1 8.4465 0.4106 2.2260 48 1 8.2306 1.1287 3.8404 49 1 7.7113 -0.5462 3.5346 50 1 0.4638 -1.7662 3.2154 51 1 -0.5130 -4.0518 3.2613 52 1 -0.0656 -5.5897 1.3905 53 1 2.2349 -2.7304 -0.5481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485578473.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:24 Heat of formation + Delta-G solvation = -4.987126 kcal Electronic energy + Delta-G solvation = -32599.680463 eV Core-core repulsion = 28663.761998 eV Total energy + Delta-G solvation = -3935.918465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.88063 -40.77874 -39.45781 -37.14324 -35.64810 -34.46407 -33.44035 -32.58312 -32.28855 -30.11354 -28.62999 -27.89598 -27.79899 -27.30882 -25.08073 -24.54197 -23.50620 -22.45452 -21.57927 -20.92973 -19.95427 -18.68503 -18.32896 -17.99858 -17.43274 -16.87501 -16.60153 -16.38810 -15.89133 -15.71028 -15.51199 -15.24729 -15.03697 -14.65862 -14.46626 -14.35173 -14.10003 -13.91241 -13.74825 -13.68504 -13.61714 -13.45384 -13.05134 -13.01613 -12.98661 -12.86727 -12.76764 -12.62959 -12.55038 -12.12978 -12.05026 -11.83566 -11.75626 -11.73811 -11.69001 -11.42346 -11.34555 -10.90871 -10.75427 -10.48704 -10.31982 -9.88832 -9.81475 -8.81790 -7.73113 -5.17831 0.21186 0.42657 1.44455 1.45509 1.54259 1.70463 2.29826 2.49578 2.95510 3.36697 3.44078 3.59217 3.68917 3.71385 3.74054 3.88066 3.99830 4.06688 4.09680 4.12324 4.14886 4.24512 4.37456 4.44183 4.50348 4.54008 4.65690 4.72219 4.78102 4.80500 4.84028 4.90068 4.92730 4.94219 4.98595 5.02365 5.06183 5.12079 5.22066 5.22869 5.23634 5.31608 5.33575 5.34949 5.41846 5.45846 5.51271 5.55349 5.73789 5.85407 5.87307 6.33820 6.68245 7.11264 7.11674 7.38011 7.82065 8.45724 9.26767 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.003931 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.596629 B = 7121.425237 C = 8373.502950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.045 4.045 5 H 0.137 0.863 6 C 0.514 3.486 7 O -0.583 6.583 8 N -0.688 5.688 9 C 0.136 3.864 10 H 0.074 0.926 11 C 0.157 3.843 12 N -0.614 5.614 13 C -0.228 4.228 14 H 0.084 0.916 15 C -0.063 4.063 16 N -0.946 5.946 17 Si 0.970 3.030 18 H -0.292 1.292 19 H -0.301 1.301 20 H -0.264 1.264 21 C 0.139 3.861 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.066 4.066 27 C -0.166 4.166 28 C 0.078 3.922 29 N -0.524 5.524 30 C 0.112 3.888 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.408 0.592 39 H -0.023 1.023 40 H 0.070 0.930 41 H 0.240 0.760 42 H 0.038 0.962 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.030 0.970 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.171 0.829 51 H 0.174 0.826 52 H 0.177 0.823 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.237 -2.645 16.996 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 C -0.211 4.211 4 C -0.067 4.067 5 H 0.154 0.846 6 C 0.302 3.698 7 O -0.462 6.462 8 N -0.339 5.339 9 C 0.030 3.970 10 H 0.092 0.908 11 C 0.030 3.970 12 N -0.340 5.340 13 C -0.357 4.357 14 H 0.102 0.898 15 C -0.256 4.256 16 N -0.596 5.596 17 Si 0.799 3.201 18 H -0.219 1.219 19 H -0.228 1.228 20 H -0.188 1.188 21 C 0.014 3.986 22 C -0.076 4.076 23 C -0.180 4.180 24 C -0.184 4.184 25 C -0.123 4.123 26 C -0.092 4.092 27 C -0.186 4.186 28 C -0.078 4.078 29 N -0.233 5.233 30 C -0.044 4.044 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.246 0.754 39 H -0.005 1.005 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.188 0.812 51 H 0.191 0.809 52 H 0.194 0.806 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.708 -3.899 15.815 21.947 hybrid contribution 0.776 1.212 -1.200 1.874 sum -13.932 -2.687 14.615 20.370 Atomic orbital electron populations 1.21745 0.92025 1.01760 1.03341 1.20968 0.97858 0.95801 0.94879 1.21961 1.00916 0.95088 1.03133 1.20315 0.89154 0.94596 1.02606 0.84555 1.20949 0.90101 0.82577 0.76218 1.90688 1.76537 1.32473 1.46531 1.45758 1.06018 1.16744 1.65350 1.22130 0.80278 0.98327 0.96294 0.90812 1.21910 0.95562 0.83410 0.96076 1.44640 1.86325 1.02108 1.00922 1.19395 1.41734 0.88951 0.85667 0.89843 1.25523 1.03142 0.97510 0.99420 1.70119 1.58660 1.13934 1.16904 0.85194 0.77127 0.78717 0.79032 1.21908 1.22757 1.18839 1.21626 0.98344 0.95144 0.83462 1.21831 0.96930 0.93894 0.94912 1.21678 0.98492 1.02614 0.95237 1.21689 0.94367 1.01687 1.00679 1.20337 0.99786 0.95692 0.96476 1.21889 0.93458 0.97276 0.96579 1.22481 1.01470 0.94028 1.00596 1.23329 0.93876 1.01192 0.89423 1.67662 1.10053 1.17667 1.27915 1.22360 0.94890 0.89076 0.98111 0.92202 0.93324 0.89767 0.94117 0.94121 0.92876 0.89331 0.75442 1.00478 0.91213 0.94995 0.94398 0.95939 0.91682 0.90516 0.91904 0.95066 0.90171 0.91507 0.81185 0.80903 0.80602 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.86 71.98 0.64 -1.91 16 2 C -0.08 -1.98 2.24 -10.79 -0.02 -2.00 16 3 C -0.15 -4.16 8.71 71.98 0.63 -3.54 16 4 C -0.04 -1.11 1.98 -12.28 -0.02 -1.13 16 5 H 0.14 2.22 7.93 -2.39 -0.02 2.21 16 6 C 0.51 17.75 6.39 87.66 0.56 18.31 16 7 O -0.58 -25.86 14.29 -3.02 -0.04 -25.90 16 8 N -0.69 -22.55 3.57 -435.95 -1.56 -24.11 16 9 C 0.14 5.20 2.63 46.38 0.12 5.32 16 10 H 0.07 3.01 7.51 -2.39 -0.02 2.99 16 11 C 0.16 7.97 5.28 86.86 0.46 8.43 16 12 N -0.61 -30.31 3.39 -691.98 -2.35 -32.65 16 13 C -0.23 -12.45 10.27 84.04 0.86 -11.59 16 14 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 15 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 16 N -0.95 -58.31 10.09 21.65 0.22 -58.09 16 17 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 18 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 19 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.14 5.21 6.41 86.73 0.56 5.77 16 22 C -0.07 -2.28 0.80 -51.00 -0.04 -2.32 16 23 C -0.12 -2.59 8.07 71.98 0.58 -2.01 16 24 C -0.13 -3.62 8.41 71.98 0.61 -3.02 16 25 C -0.12 -3.04 3.14 -19.77 -0.06 -3.11 16 26 C -0.07 -1.16 9.81 22.47 0.22 -0.94 16 27 C -0.17 -2.65 10.11 22.36 0.23 -2.43 16 28 C 0.08 1.70 11.18 84.69 0.95 2.64 16 29 N -0.52 -16.19 10.36 -195.85 -2.03 -18.22 16 30 C 0.11 3.63 9.07 84.67 0.77 4.40 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.00 7.00 -2.39 -0.02 0.99 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 1.37 7.60 -2.39 -0.02 1.35 16 35 H 0.04 1.43 5.94 -2.39 -0.01 1.41 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.41 11.37 6.16 -92.71 -0.57 10.80 16 39 H -0.02 -1.29 7.81 -2.39 -0.02 -1.31 16 40 H 0.07 4.20 5.87 -2.39 -0.01 4.19 16 41 H 0.24 14.74 8.31 -92.70 -0.77 13.97 16 42 H 0.04 1.31 7.77 -2.39 -0.02 1.29 16 43 H 0.02 0.86 7.85 -2.38 -0.02 0.84 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.06 1.20 6.48 -2.39 -0.02 1.19 16 47 H 0.03 1.08 7.59 -2.39 -0.02 1.06 16 48 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 49 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.17 1.62 8.00 -2.91 -0.02 1.60 16 51 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 52 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 53 H 0.12 4.65 6.98 -2.91 -0.02 4.63 16 Total: -1.00 -78.16 409.33 4.07 -74.08 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.32 Total: 28.95 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 7.49 Total: 7.74 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -5.72 Total: -133.07 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.04 Total: -25.90 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -78.16 4.07 -74.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485578473.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.094 kcal (2) G-P(sol) polarization free energy of solvation -78.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds