Wall clock time and date at job start Wed Apr 1 2020 03:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47397 * 2 1 4 4 C 1.52998 * 109.47236 * 120.00512 * 2 1 3 5 5 H 1.08999 * 109.47353 * 301.24305 * 4 2 1 6 6 C 1.50702 * 109.46925 * 61.24020 * 4 2 1 7 7 O 1.21282 * 120.00143 * 98.83980 * 6 4 2 8 8 N 1.34776 * 120.00285 * 278.83003 * 6 4 2 9 9 C 1.46493 * 120.00328 * 185.42116 * 8 6 4 10 10 H 1.08998 * 110.88839 * 330.49364 * 9 8 6 11 11 C 1.54912 * 111.00815 * 94.37712 * 9 8 6 12 12 N 1.47531 * 104.78252 * 81.08790 * 11 9 8 13 13 C 1.36929 * 125.63551 * 204.08684 * 12 11 9 14 14 H 1.08007 * 120.00193 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00478 * 0.04186 * 13 12 11 16 16 N 1.31619 * 119.99635 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00355 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47207 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46995 * 120.00100 * 17 15 13 20 20 H 1.48499 * 109.47589 * 239.99957 * 17 15 13 21 21 C 1.47021 * 108.71493 * 24.12064 * 12 11 9 22 22 C 1.54332 * 107.27218 * 358.94290 * 21 12 11 23 23 C 1.52993 * 110.71944 * 219.44005 * 22 21 12 24 24 C 1.52999 * 110.86899 * 96.23997 * 22 21 12 25 25 C 1.50695 * 109.47312 * 181.23942 * 4 2 1 26 26 C 1.38676 * 120.41926 * 119.71767 * 25 4 2 27 27 C 1.38631 * 118.42107 * 179.78411 * 26 25 4 28 28 C 1.38231 * 119.15955 * 0.47552 * 27 26 25 29 29 N 1.31859 * 120.76388 * 359.76526 * 28 27 26 30 30 C 1.31881 * 121.72544 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47177 * 66.99898 * 1 2 3 32 32 H 1.09003 * 109.47222 * 187.00331 * 1 2 3 33 33 H 1.08999 * 109.46835 * 306.99884 * 1 2 3 34 34 H 1.09008 * 109.46415 * 240.00284 * 2 1 3 35 35 H 1.09003 * 109.46690 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46929 * 300.00267 * 3 2 1 37 37 H 1.08997 * 109.46748 * 60.00387 * 3 2 1 38 38 H 0.97005 * 119.99537 * 5.69552 * 8 6 4 39 39 H 1.09000 * 110.37047 * 199.90457 * 11 9 8 40 40 H 1.08997 * 110.36332 * 322.22831 * 11 9 8 41 41 H 0.96999 * 120.00274 * 179.97438 * 16 15 13 42 42 H 1.08992 * 109.88585 * 239.52669 * 21 12 11 43 43 H 1.09002 * 110.01205 * 118.43157 * 21 12 11 44 44 H 1.09000 * 109.47133 * 170.19247 * 23 22 21 45 45 H 1.09000 * 109.47590 * 290.19703 * 23 22 21 46 46 H 1.08999 * 109.47180 * 50.20051 * 23 22 21 47 47 H 1.09003 * 109.47057 * 306.38451 * 24 22 21 48 48 H 1.08990 * 109.47366 * 66.38968 * 24 22 21 49 49 H 1.09007 * 109.46942 * 186.39330 * 24 22 21 50 50 H 1.08001 * 120.78653 * 0.02714 * 26 25 4 51 51 H 1.07995 * 120.41585 * 180.22545 * 27 26 25 52 52 H 1.07992 * 119.61483 * 179.75065 * 28 27 26 53 53 H 1.07999 * 119.61738 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6586 -0.2207 2.1391 6 6 1.5629 -2.1508 1.2337 7 8 2.3039 -3.0333 0.8555 8 7 0.3130 -2.4485 1.6404 9 6 -0.1119 -3.8470 1.7385 10 1 0.4179 -4.4659 1.0143 11 6 0.0824 -4.3868 3.1775 12 7 -1.0947 -3.9022 3.9233 13 6 -1.1594 -3.7165 5.2784 14 1 -2.0716 -3.3565 5.7312 15 6 -0.0527 -3.9904 6.0703 16 7 1.0591 -4.4282 5.5185 17 14 -0.1409 -3.7363 7.9188 18 1 -1.4916 -3.2405 8.2865 19 1 0.1172 -5.0258 8.6086 20 1 0.8813 -2.7411 8.3311 21 6 -2.1866 -3.6526 2.9711 22 6 -1.6479 -3.9754 1.5613 23 6 -2.1619 -2.9592 0.5397 24 6 -2.0279 -5.3979 1.1452 25 6 3.5466 -0.6948 1.2646 26 6 4.2275 -0.0871 2.3088 27 6 5.6136 -0.0908 2.2834 28 6 6.2662 -0.6870 1.2207 29 7 5.5859 -1.2512 0.2422 30 6 4.2672 -1.2702 0.2354 31 1 -0.3634 0.4016 -0.9460 32 1 -0.3634 -1.0200 0.1253 33 1 -0.3633 0.6184 0.8207 34 1 1.8932 -0.5138 -0.8901 35 1 3.1301 1.4423 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8900 38 1 -0.3067 -1.7365 1.8643 39 1 0.1070 -5.4765 3.1739 40 1 0.9987 -3.9872 3.6120 41 1 1.8326 -4.6193 6.0717 42 1 -2.4905 -2.6071 3.0213 43 1 -3.0357 -4.2967 3.1999 44 1 -1.6377 -3.0977 -0.4059 45 1 -3.2311 -3.1060 0.3872 46 1 -1.9829 -1.9497 0.9097 47 1 -1.7020 -6.1002 1.9125 48 1 -3.1092 -5.4652 1.0267 49 1 -1.5429 -5.6417 0.1999 50 1 3.6907 0.3745 3.1244 51 1 6.1763 0.3699 3.0818 52 1 7.3457 -0.6905 1.1914 53 1 3.7444 -1.7414 -0.5837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485578475.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:34 Heat of formation + Delta-G solvation = -3.955060 kcal Electronic energy + Delta-G solvation = -32546.450959 eV Core-core repulsion = 28610.577247 eV Total energy + Delta-G solvation = -3935.873711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.91522 -40.79937 -39.46714 -37.13777 -35.67291 -34.48216 -33.45607 -32.60286 -32.31880 -30.13726 -28.66949 -27.91550 -27.75419 -27.31136 -25.09137 -24.57841 -23.55357 -22.46768 -21.51108 -20.95833 -19.99693 -18.70670 -18.32493 -18.05381 -17.50105 -16.93707 -16.60978 -16.25297 -16.14175 -15.67845 -15.40407 -15.25012 -14.98543 -14.66963 -14.62988 -14.31569 -14.14370 -13.95662 -13.72503 -13.68519 -13.60792 -13.44030 -13.06055 -13.02481 -12.92688 -12.88751 -12.82844 -12.63300 -12.56064 -12.12283 -12.00038 -11.80879 -11.77820 -11.68429 -11.64328 -11.43952 -11.34236 -10.92756 -10.78617 -10.52148 -10.38178 -9.91461 -9.80978 -8.83992 -7.75414 -5.20305 0.18221 0.37030 1.44242 1.45517 1.55507 1.68769 2.28561 2.48686 2.92426 3.34582 3.41348 3.59061 3.63770 3.71960 3.72460 3.88055 3.99073 4.03019 4.09038 4.11282 4.14064 4.22452 4.37949 4.43651 4.49392 4.53118 4.65887 4.72873 4.77538 4.84031 4.85935 4.88729 4.90655 4.93970 5.00890 5.03005 5.07159 5.11595 5.19311 5.21237 5.23053 5.31649 5.32016 5.34311 5.43570 5.44259 5.50290 5.56113 5.71627 5.80314 5.83647 6.30429 6.65602 7.05683 7.09599 7.34168 7.79578 8.43501 9.25084 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.004334 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.665915 B = 6459.705831 C = 8183.789407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 C -0.137 4.137 4 C -0.052 4.052 5 H 0.111 0.889 6 C 0.519 3.481 7 O -0.580 6.580 8 N -0.689 5.689 9 C 0.134 3.866 10 H 0.079 0.921 11 C 0.155 3.845 12 N -0.616 5.616 13 C -0.229 4.229 14 H 0.085 0.915 15 C -0.067 4.067 16 N -0.949 5.949 17 Si 0.974 3.026 18 H -0.262 1.262 19 H -0.299 1.299 20 H -0.294 1.294 21 C 0.139 3.861 22 C -0.074 4.074 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.079 4.079 27 C -0.172 4.172 28 C 0.081 3.919 29 N -0.517 5.517 30 C 0.119 3.881 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.408 0.592 39 H -0.019 1.019 40 H 0.068 0.932 41 H 0.241 0.759 42 H 0.038 0.962 43 H 0.024 0.976 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.031 0.969 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.149 0.851 51 H 0.165 0.835 52 H 0.180 0.820 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 13.865 -12.563 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.093 4.093 3 C -0.194 4.194 4 C -0.074 4.074 5 H 0.129 0.871 6 C 0.306 3.694 7 O -0.460 6.460 8 N -0.340 5.340 9 C 0.028 3.972 10 H 0.097 0.903 11 C 0.029 3.971 12 N -0.342 5.342 13 C -0.358 4.358 14 H 0.103 0.897 15 C -0.259 4.259 16 N -0.599 5.599 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.227 1.227 20 H -0.221 1.221 21 C 0.014 3.986 22 C -0.075 4.075 23 C -0.182 4.182 24 C -0.184 4.184 25 C -0.124 4.124 26 C -0.105 4.105 27 C -0.191 4.191 28 C -0.075 4.075 29 N -0.226 5.226 30 C -0.038 4.038 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.246 0.754 39 H -0.001 1.001 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.050 0.950 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.167 0.833 51 H 0.182 0.818 52 H 0.197 0.803 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.171 12.836 -13.318 18.497 hybrid contribution -0.281 -0.157 2.297 2.320 sum -0.452 12.679 -11.020 16.805 Atomic orbital electron populations 1.22193 0.93218 1.02918 1.03923 1.21030 0.97164 0.96794 0.94266 1.21776 1.00428 0.94030 1.03204 1.20371 0.91694 0.92261 1.03087 0.87144 1.20823 0.81320 0.91360 0.75908 1.90670 1.55518 1.50667 1.49150 1.45812 1.13412 1.08203 1.66548 1.22170 0.95159 0.82868 0.97022 0.90340 1.21955 0.92754 0.93442 0.88947 1.44704 1.10039 1.77002 1.02464 1.19476 0.97767 1.36137 0.82393 0.89732 1.25576 0.95977 1.02218 1.02171 1.70123 1.03066 1.52750 1.33972 0.85060 0.77728 0.76579 0.80294 1.18665 1.22670 1.22082 1.21640 0.90644 0.97983 0.88350 1.21819 0.92489 0.97952 0.95235 1.21749 1.01848 0.97336 0.97275 1.21691 1.02314 0.93797 1.00631 1.20401 0.95393 1.00163 0.96487 1.21836 0.95286 0.96376 0.97025 1.22424 0.94798 1.01362 1.00548 1.23270 1.01626 0.93056 0.89560 1.67685 1.09239 1.17276 1.28374 1.22489 0.89509 0.94093 0.97662 0.90281 0.92277 0.90920 0.91400 0.93796 0.90797 0.91379 0.75447 1.00080 0.91397 0.94900 0.94430 0.95841 0.91739 0.90475 0.91840 0.94976 0.90199 0.91469 0.83281 0.81787 0.80337 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.56 71.98 0.62 -2.02 16 2 C -0.07 -1.43 2.30 -10.80 -0.02 -1.46 16 3 C -0.14 -2.18 8.93 71.98 0.64 -1.53 16 4 C -0.05 -1.36 1.99 -12.29 -0.02 -1.38 16 5 H 0.11 2.63 7.93 -2.39 -0.02 2.62 16 6 C 0.52 17.84 6.44 87.66 0.56 18.40 16 7 O -0.58 -24.85 14.20 -3.03 -0.04 -24.90 16 8 N -0.69 -22.65 3.42 -435.97 -1.49 -24.14 16 9 C 0.13 5.10 2.73 46.39 0.13 5.22 16 10 H 0.08 3.18 7.33 -2.39 -0.02 3.16 16 11 C 0.16 7.83 5.28 86.84 0.46 8.29 16 12 N -0.62 -30.34 3.40 -691.71 -2.35 -32.69 16 13 C -0.23 -12.41 10.27 84.04 0.86 -11.55 16 14 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 15 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 16 N -0.95 -57.84 10.09 21.65 0.22 -57.62 16 17 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 21 C 0.14 5.19 6.41 86.73 0.56 5.74 16 22 C -0.07 -2.26 0.80 -50.99 -0.04 -2.30 16 23 C -0.12 -2.68 7.56 71.98 0.54 -2.14 16 24 C -0.13 -3.62 8.41 71.98 0.61 -3.01 16 25 C -0.12 -3.48 3.29 -19.77 -0.07 -3.55 16 26 C -0.08 -2.00 9.81 22.47 0.22 -1.78 16 27 C -0.17 -3.86 10.11 22.36 0.23 -3.64 16 28 C 0.08 2.03 11.18 84.69 0.95 2.98 16 29 N -0.52 -16.22 10.36 -195.84 -2.03 -18.25 16 30 C 0.12 3.77 9.07 84.67 0.77 4.54 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.09 3.76 -2.39 -0.01 1.09 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.46 7.46 -2.38 -0.02 1.44 16 35 H 0.04 0.81 7.18 -2.39 -0.02 0.79 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.41 11.62 5.94 -92.70 -0.55 11.07 16 39 H -0.02 -1.05 7.81 -2.39 -0.02 -1.07 16 40 H 0.07 4.04 5.88 -2.39 -0.01 4.03 16 41 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.04 1.30 7.71 -2.39 -0.02 1.29 16 43 H 0.02 0.89 7.85 -2.39 -0.02 0.87 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.06 1.26 5.54 -2.39 -0.01 1.24 16 47 H 0.03 1.10 7.59 -2.39 -0.02 1.08 16 48 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 50 H 0.15 3.15 8.00 -2.91 -0.02 3.13 16 51 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 52 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 53 H 0.14 4.63 7.01 -2.91 -0.02 4.61 16 Total: -1.00 -74.73 405.34 4.13 -70.59 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.35 Total: 31.90 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 7.45 Total: 7.50 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -5.65 Total: -132.70 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.73 4.13 -70.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485578475.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.638 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds