Wall clock time and date at job start Wed Apr 1 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47075 * 2 1 4 4 C 1.53002 * 109.47237 * 240.00360 * 2 1 3 5 5 C 1.52995 * 109.47445 * 120.00076 * 2 1 3 6 6 H 1.09005 * 109.47022 * 179.97438 * 5 2 1 7 7 C 1.52996 * 109.47155 * 60.00228 * 5 2 1 8 8 N 1.46503 * 109.47535 * 184.99967 * 7 5 2 9 9 C 1.36928 * 120.00074 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00288 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99766 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00418 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99992 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47164 * 90.00020 * 13 11 9 15 15 H 1.48494 * 109.47437 * 209.99658 * 13 11 9 16 16 H 1.48498 * 109.47248 * 330.00170 * 13 11 9 17 17 N 1.46495 * 109.47260 * 300.00232 * 5 2 1 18 18 C 1.34787 * 120.00070 * 274.99997 * 17 5 2 19 19 O 1.21285 * 119.99495 * 359.97438 * 18 17 5 20 20 C 1.50690 * 120.00143 * 180.02562 * 18 17 5 21 21 N 1.46895 * 109.47232 * 185.52390 * 20 18 17 22 22 C 1.47897 * 111.00313 * 75.83538 * 21 20 18 23 23 C 1.54602 * 102.62917 * 94.66306 * 22 21 20 24 24 C 1.51574 * 102.81729 * 25.61157 * 23 22 21 25 25 C 1.37911 * 131.57228 * 163.77542 * 24 23 22 26 26 C 1.38305 * 120.08023 * 180.28035 * 25 24 23 27 27 C 1.38302 * 119.88461 * 0.03274 * 26 25 24 28 28 C 1.37912 * 120.26257 * 359.84742 * 27 26 25 29 29 C 1.38965 * 107.94377 * 343.80609 * 24 23 22 30 30 H 1.09001 * 109.46933 * 299.99587 * 1 2 3 31 31 H 1.08997 * 109.47284 * 59.99770 * 1 2 3 32 32 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47303 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47252 * 300.00249 * 3 2 1 35 35 H 1.09001 * 109.46903 * 60.00395 * 3 2 1 36 36 H 1.09000 * 109.47041 * 299.99782 * 4 2 1 37 37 H 1.09005 * 109.47394 * 59.99690 * 4 2 1 38 38 H 1.08996 * 109.47452 * 179.97438 * 4 2 1 39 39 H 1.08999 * 109.46920 * 305.00231 * 7 5 2 40 40 H 1.08999 * 109.47699 * 64.99756 * 7 5 2 41 41 H 0.96997 * 119.99215 * 359.97438 * 8 7 5 42 42 H 0.96997 * 120.00329 * 179.97438 * 12 11 9 43 43 H 0.97000 * 120.00102 * 94.99717 * 17 5 2 44 44 H 1.09007 * 109.47043 * 305.52035 * 20 18 17 45 45 H 1.08996 * 109.47288 * 65.51999 * 20 18 17 46 46 H 1.09007 * 110.78004 * 212.94796 * 22 21 20 47 47 H 1.08999 * 110.77701 * 336.18637 * 22 21 20 48 48 H 1.09001 * 110.74342 * 143.94432 * 23 22 21 49 49 H 1.09001 * 110.74529 * 267.27306 * 23 22 21 50 50 H 1.08007 * 119.96051 * 0.28357 * 25 24 23 51 51 H 1.08005 * 120.05723 * 179.97438 * 26 25 24 52 52 H 1.07992 * 119.86805 * 179.87820 * 27 26 25 53 53 H 1.07997 * 119.89640 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 3.1301 -0.7216 1.2489 7 6 1.5302 -2.1637 1.2492 8 7 1.9178 -2.8188 2.5009 9 6 1.5683 -4.1232 2.7278 10 1 1.0066 -4.6689 1.9842 11 6 1.9352 -4.7437 3.9142 12 7 2.6193 -4.0784 4.8207 13 14 1.4579 -6.5229 4.2241 14 1 2.5275 -7.4183 3.7146 15 1 1.2823 -6.7415 5.6823 16 1 0.1845 -6.8233 3.5216 17 7 1.5517 -0.0307 2.4453 18 6 2.2286 1.0262 2.9369 19 8 3.2421 1.4052 2.3891 20 6 1.7266 1.7361 4.1677 21 7 2.5557 2.9218 4.4214 22 6 2.2212 4.0136 3.4815 23 6 1.1979 4.8493 4.2846 24 6 1.5626 4.5365 5.7222 25 6 1.2394 5.1658 6.9060 26 6 1.7154 4.6709 8.1066 27 6 2.5169 3.5439 8.1181 28 6 2.8411 2.9095 6.9373 29 6 2.3625 3.4001 5.7234 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 0.4439 -2.1651 1.1596 40 1 1.9647 -2.7028 0.4073 41 1 2.4219 -2.3285 3.1689 42 1 2.8753 -4.5119 5.6498 43 1 0.7413 -0.3341 2.8836 44 1 0.6919 2.0425 4.0138 45 1 1.7829 1.0635 5.0235 46 1 3.1054 4.6064 3.2469 47 1 1.7713 3.6163 2.5717 48 1 1.3205 5.9124 4.0777 49 1 0.1798 4.5273 4.0657 50 1 0.6137 6.0461 6.8955 51 1 1.4623 5.1643 9.0334 52 1 2.8901 3.1589 9.0555 53 1 3.4671 2.0296 6.9532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486423805.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:29 Heat of formation + Delta-G solvation = -3.022089 kcal Electronic energy + Delta-G solvation = -31462.804049 eV Core-core repulsion = 27526.970795 eV Total energy + Delta-G solvation = -3935.833255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.00473 -40.98800 -38.73012 -37.44142 -36.18812 -34.56255 -33.39906 -32.94015 -31.09794 -29.86251 -29.41180 -28.20209 -28.13136 -27.17854 -25.51575 -24.02309 -23.17119 -22.29064 -22.13054 -21.21165 -19.83934 -19.10373 -18.13099 -17.72324 -17.27823 -16.98716 -16.79002 -16.38153 -16.19875 -15.98169 -15.51443 -15.39159 -14.95357 -14.83390 -14.70251 -14.59446 -14.40372 -14.18972 -13.85593 -13.65579 -13.54489 -13.32387 -13.06730 -13.03189 -12.94611 -12.88886 -12.74041 -12.49710 -12.44198 -12.36547 -12.16212 -12.13929 -12.00386 -11.79339 -11.73882 -11.60235 -11.27451 -11.01012 -10.88574 -10.28398 -9.82922 -9.73734 -8.98398 -8.85988 -7.93453 -5.22655 0.34297 0.44719 1.47925 1.49311 1.57542 1.72430 2.09968 2.56245 2.74025 2.83507 3.40774 3.59631 3.66843 3.75102 3.80116 3.91482 3.99181 4.06493 4.13997 4.15337 4.26582 4.26957 4.28077 4.36750 4.47544 4.53541 4.53755 4.66212 4.68224 4.72480 4.84476 4.86292 4.89863 4.92707 4.98252 5.00145 5.08191 5.10493 5.16038 5.18093 5.26428 5.33496 5.41867 5.46707 5.49831 5.51564 5.58400 5.60097 5.68823 5.82186 5.86310 6.27125 6.28938 6.66505 7.34408 7.37102 8.08752 8.32343 9.29534 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008844 B = 0.003405 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.377337 B = 8220.094232 C =10845.009016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.118 4.118 4 C -0.140 4.140 5 C 0.162 3.838 6 H 0.051 0.949 7 C 0.144 3.856 8 N -0.742 5.742 9 C -0.242 4.242 10 H 0.078 0.922 11 C -0.072 4.072 12 N -0.968 5.968 13 Si 0.971 3.029 14 H -0.292 1.292 15 H -0.297 1.297 16 H -0.266 1.266 17 N -0.706 5.706 18 C 0.515 3.485 19 O -0.552 6.552 20 C 0.048 3.952 21 N -0.494 5.494 22 C 0.059 3.941 23 C -0.101 4.101 24 C -0.147 4.147 25 C -0.093 4.093 26 C -0.131 4.131 27 C -0.109 4.109 28 C -0.133 4.133 29 C 0.067 3.933 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.406 0.594 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.146 0.854 51 H 0.153 0.847 52 H 0.144 0.856 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 21.107 -1.947 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.175 4.175 4 C -0.198 4.198 5 C 0.057 3.943 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.385 5.385 9 C -0.374 4.374 10 H 0.096 0.904 11 C -0.265 4.265 12 N -0.619 5.619 13 Si 0.800 3.200 14 H -0.219 1.219 15 H -0.224 1.224 16 H -0.191 1.191 17 N -0.357 5.357 18 C 0.301 3.699 19 O -0.430 6.430 20 C -0.081 4.081 21 N -0.211 5.211 22 C -0.068 4.068 23 C -0.139 4.139 24 C -0.150 4.150 25 C -0.111 4.111 26 C -0.149 4.149 27 C -0.127 4.127 28 C -0.153 4.153 29 C -0.029 4.029 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.241 0.759 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.124 0.876 49 H 0.111 0.889 50 H 0.164 0.836 51 H 0.171 0.829 52 H 0.162 0.838 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.819 21.008 -2.541 22.232 hybrid contribution -0.372 -1.261 0.989 1.645 sum -7.191 19.747 -1.552 21.073 Atomic orbital electron populations 1.21861 0.93034 1.02186 1.02211 1.20847 0.96984 0.95628 0.93651 1.21761 1.00062 0.94795 1.00920 1.21888 1.00611 1.00577 0.96704 1.21023 0.97698 0.90744 0.84841 0.93122 1.21224 0.98053 0.90200 0.88720 1.42538 1.66792 1.11097 1.18110 1.19617 1.27716 0.89400 1.00651 0.90375 1.25521 1.01689 1.02167 0.97109 1.69830 1.45143 1.37752 1.09141 0.85181 0.78063 0.80304 0.76435 1.21904 1.22400 1.19106 1.45852 1.29235 1.31137 1.29504 1.20587 0.83733 0.80504 0.85098 1.90676 1.25231 1.66203 1.60863 1.21992 0.96449 0.92735 0.96926 1.59568 1.53778 1.06360 1.01384 1.23115 0.98479 0.90610 0.94577 1.21711 1.00050 1.02582 0.89581 1.21278 0.98649 0.98491 0.96584 1.20740 0.99763 1.00091 0.90544 1.21432 0.98229 0.96493 0.98763 1.21213 0.98083 0.95947 0.97458 1.20734 1.01647 1.01636 0.91246 1.19721 0.97029 0.96496 0.89615 0.92699 0.91202 0.92334 0.94385 0.91901 0.93684 0.92205 0.90629 0.93636 0.93772 0.94806 0.79523 0.94192 0.75898 0.89044 0.88469 0.89930 0.89845 0.87604 0.88914 0.83626 0.82942 0.83841 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 7.97 71.98 0.57 -2.36 16 2 C -0.07 -1.79 0.62 -52.18 -0.03 -1.82 16 3 C -0.12 -3.08 7.00 71.98 0.50 -2.57 16 4 C -0.14 -3.36 8.12 71.98 0.58 -2.77 16 5 C 0.16 5.39 1.69 44.99 0.08 5.46 16 6 H 0.05 2.05 7.58 -2.38 -0.02 2.03 16 7 C 0.14 5.46 5.10 86.38 0.44 5.90 16 8 N -0.74 -36.68 5.43 -343.46 -1.87 -38.55 16 9 C -0.24 -13.17 9.99 84.04 0.84 -12.33 16 10 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 11 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 12 N -0.97 -59.10 13.06 21.65 0.28 -58.81 16 13 Si 0.97 45.69 29.55 68.60 2.03 47.71 16 14 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 15 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 N -0.71 -22.06 3.64 -442.54 -1.61 -23.67 16 18 C 0.51 16.69 5.65 87.65 0.50 17.18 16 19 O -0.55 -21.26 13.09 -3.04 -0.04 -21.30 16 20 C 0.05 1.32 5.23 85.55 0.45 1.77 16 21 N -0.49 -13.96 4.59 -693.00 -3.18 -17.14 16 22 C 0.06 1.33 6.36 86.66 0.55 1.89 16 23 C -0.10 -1.74 6.93 30.67 0.21 -1.53 16 24 C -0.15 -3.12 6.23 -19.49 -0.12 -3.25 16 25 C -0.09 -1.61 10.03 22.21 0.22 -1.39 16 26 C -0.13 -2.19 10.06 22.30 0.22 -1.97 16 27 C -0.11 -2.20 10.02 22.21 0.22 -1.98 16 28 C -0.13 -3.45 10.04 22.47 0.23 -3.23 16 29 C 0.07 1.78 5.50 38.28 0.21 1.99 16 30 H 0.05 1.16 7.60 -2.39 -0.02 1.14 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.32 6.32 -2.39 -0.02 1.31 16 33 H 0.04 1.17 7.53 -2.39 -0.02 1.15 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.21 5.64 -2.39 -0.01 1.20 16 36 H 0.06 1.46 6.54 -2.39 -0.02 1.44 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 1.57 6.17 -2.39 -0.01 1.55 16 40 H 0.03 1.31 6.71 -2.39 -0.02 1.29 16 41 H 0.37 20.18 7.33 -92.71 -0.68 19.50 16 42 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.41 12.02 8.60 -92.71 -0.80 11.22 16 44 H 0.09 2.01 7.95 -2.38 -0.02 1.99 16 45 H 0.10 2.89 7.95 -2.39 -0.02 2.87 16 46 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.08 1.87 7.17 -2.39 -0.02 1.85 16 48 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 51 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 52 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 53 H 0.11 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -69.99 411.20 1.19 -68.80 By element: Atomic # 1 Polarization: 48.18 SS G_CDS: -0.56 Total: 47.62 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 6.14 Total: -4.65 kcal Atomic # 7 Polarization: -131.80 SS G_CDS: -6.38 Total: -138.18 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.04 Total: -21.30 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -69.99 1.19 -68.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486423805.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.779 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds