Wall clock time and date at job start Wed Apr 1 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47021 * 2 1 4 4 C 1.52996 * 109.47347 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47268 * 305.64002 * 4 3 2 6 6 C 1.50699 * 109.47552 * 185.63388 * 4 3 2 7 7 O 1.21279 * 119.99892 * 338.96306 * 6 4 3 8 8 N 1.34780 * 120.00081 * 158.96350 * 6 4 3 9 9 C 1.46924 * 120.62910 * 355.08542 * 8 6 4 10 10 C 1.53200 * 108.77171 * 233.62801 * 9 8 6 11 11 C 1.53040 * 109.31150 * 305.36147 * 10 9 8 12 12 C 1.53042 * 109.53496 * 61.36921 * 11 10 9 13 13 H 1.09003 * 109.50137 * 58.61586 * 12 11 10 14 14 C 1.53003 * 109.49707 * 178.67948 * 12 11 10 15 15 N 1.46495 * 109.47230 * 295.00073 * 14 12 11 16 16 C 1.36936 * 120.00158 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00216 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00080 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00014 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99905 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47002 * 60.00156 * 20 18 16 22 22 H 1.48505 * 109.46929 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47317 * 299.99718 * 20 18 16 24 24 C 1.46924 * 120.63057 * 175.10351 * 8 6 4 25 25 C 1.50702 * 109.47137 * 65.63365 * 4 3 2 26 26 C 1.38231 * 119.62043 * 84.99914 * 25 4 3 27 27 C 1.38619 * 119.16632 * 179.97438 * 26 25 4 28 28 C 1.38678 * 118.41821 * 0.02562 * 27 26 25 29 29 C 1.38176 * 119.16542 * 359.97438 * 28 27 26 30 30 N 1.31855 * 119.62040 * 264.73058 * 25 4 3 31 31 H 1.08999 * 109.47135 * 299.99286 * 1 2 3 32 32 H 1.08995 * 109.47500 * 59.99656 * 1 2 3 33 33 H 1.09004 * 109.47285 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46897 * 239.99983 * 2 1 3 35 35 H 1.08997 * 109.47003 * 120.00486 * 2 1 3 36 36 H 1.09002 * 109.47298 * 60.00229 * 3 2 1 37 37 H 1.08997 * 109.47629 * 300.00102 * 3 2 1 38 38 H 1.08997 * 109.58644 * 113.84390 * 9 8 6 39 39 H 1.08994 * 109.58942 * 353.41537 * 9 8 6 40 40 H 1.08993 * 109.49969 * 65.31782 * 10 9 8 41 41 H 1.09004 * 109.49022 * 185.38253 * 10 9 8 42 42 H 1.09002 * 109.45629 * 181.38415 * 11 10 9 43 43 H 1.08996 * 109.46177 * 301.36211 * 11 10 9 44 44 H 1.08998 * 109.47064 * 55.00014 * 14 12 11 45 45 H 1.09004 * 109.46918 * 174.99843 * 14 12 11 46 46 H 0.97004 * 119.99801 * 359.97438 * 15 14 12 47 47 H 0.97001 * 119.99900 * 180.02562 * 19 18 16 48 48 H 1.09000 * 109.58611 * 6.57966 * 24 8 6 49 49 H 1.09003 * 109.58735 * 246.15813 * 24 8 6 50 50 H 1.08006 * 120.41234 * 0.02562 * 26 25 4 51 51 H 1.08002 * 120.79282 * 179.97438 * 27 26 25 52 52 H 1.07996 * 120.41700 * 180.02562 * 28 27 26 53 53 H 1.07998 * 119.62166 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8439 0.8361 6 6 4.0722 2.8565 0.1401 7 8 3.3502 3.7876 -0.1473 8 7 5.3238 3.0863 0.5843 9 6 6.1727 1.9763 1.0379 10 6 6.6822 2.2897 2.4483 11 6 7.3787 3.6524 2.4436 12 6 6.3779 4.7373 2.0394 13 1 5.5405 4.7381 2.7372 14 6 7.0666 6.1033 2.0668 15 7 7.4544 6.4271 3.4419 16 6 8.0904 7.6090 3.7137 17 1 8.3065 8.3022 2.9143 18 6 8.4574 7.9160 5.0168 19 7 8.1937 7.0714 5.9912 20 14 9.3257 9.5279 5.3874 21 1 8.4572 10.6624 4.9825 22 1 9.6069 9.6154 6.8429 23 1 10.6026 9.5876 4.6316 24 6 5.8650 4.4517 0.6245 25 6 4.0728 0.8562 -1.2933 26 6 4.2022 1.6663 -2.4058 27 6 4.6662 1.1173 -3.5911 28 6 4.9837 -0.2325 -3.6134 29 6 4.8287 -0.9798 -2.4616 30 7 4.3894 -0.4226 -1.3498 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 7.0191 1.8631 0.3604 39 1 5.5908 1.0549 1.0560 40 1 5.8418 2.3131 3.1419 41 1 7.3891 1.5203 2.7590 42 1 7.7638 3.8668 3.4406 43 1 8.2037 3.6361 1.7314 44 1 7.9549 6.0750 1.4359 45 1 6.3803 6.8638 1.6942 46 1 7.2600 5.8046 4.1600 47 1 8.4498 7.2862 6.9018 48 1 5.0798 5.1635 0.3697 49 1 6.6862 4.5403 -0.0867 50 1 3.9458 2.7141 -2.3520 51 1 4.7771 1.7260 -4.4763 52 1 5.3484 -0.6935 -4.5194 53 1 5.0733 -2.0317 -2.4708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491169018.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:47 Heat of formation + Delta-G solvation = -25.264382 kcal Electronic energy + Delta-G solvation = -30940.192919 eV Core-core repulsion = 27003.395166 eV Total energy + Delta-G solvation = -3936.797753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.03379 -40.71756 -39.02501 -36.66757 -36.64118 -34.50094 -33.44131 -33.18727 -32.96737 -31.70649 -30.17662 -27.44855 -26.82649 -25.63563 -24.57716 -24.49812 -23.47677 -23.08076 -21.95857 -21.15380 -19.88444 -19.21978 -18.33013 -18.04899 -17.29030 -16.99531 -16.66659 -16.33638 -16.07877 -15.92241 -15.71851 -15.50884 -15.41759 -15.11697 -14.90637 -14.67051 -14.39548 -14.26806 -13.95085 -13.87331 -13.75103 -13.59497 -13.41568 -13.24538 -12.89362 -12.80832 -12.75906 -12.40474 -12.23298 -12.21122 -12.08430 -11.94331 -11.92135 -11.73788 -11.62939 -11.53682 -11.40371 -10.93134 -10.87505 -10.77811 -10.41169 -9.92617 -9.71693 -9.01254 -7.96219 -5.25175 0.11987 0.33754 1.42797 1.46074 1.49490 1.55532 1.84960 2.55361 2.79988 3.17227 3.36371 3.37552 3.68851 3.74568 3.81927 3.86220 3.89058 3.94191 4.00320 4.07911 4.18068 4.20508 4.23699 4.27110 4.35785 4.40698 4.43106 4.52167 4.62450 4.65728 4.68399 4.74353 4.75733 4.80719 4.83057 4.83930 4.91581 4.93912 5.02397 5.14393 5.19598 5.20912 5.22409 5.28647 5.32256 5.37081 5.41596 5.45235 5.47444 5.48779 5.76192 6.25622 6.31287 6.99496 7.02707 7.32183 8.07290 8.31646 9.27215 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.002269 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.759006 B =12337.931959 C =12873.770195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.092 4.092 4 C -0.052 4.052 5 H 0.122 0.878 6 C 0.522 3.478 7 O -0.573 6.573 8 N -0.603 5.603 9 C 0.109 3.891 10 C -0.127 4.127 11 C -0.106 4.106 12 C -0.093 4.093 13 H 0.052 0.948 14 C 0.160 3.840 15 N -0.742 5.742 16 C -0.248 4.248 17 H 0.075 0.925 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.975 3.025 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.276 1.276 24 C 0.128 3.872 25 C 0.136 3.864 26 C -0.182 4.182 27 C -0.075 4.075 28 C -0.167 4.167 29 C 0.096 3.904 30 N -0.487 5.487 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.028 0.972 45 H 0.014 0.986 46 H 0.375 0.625 47 H 0.252 0.748 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.116 0.884 51 H 0.153 0.847 52 H 0.166 0.834 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 -22.709 -20.614 31.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.130 4.130 4 C -0.074 4.074 5 H 0.140 0.860 6 C 0.310 3.690 7 O -0.452 6.452 8 N -0.334 5.334 9 C -0.013 4.013 10 C -0.165 4.165 11 C -0.143 4.143 12 C -0.113 4.113 13 H 0.071 0.929 14 C 0.033 3.967 15 N -0.385 5.385 16 C -0.380 4.380 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.804 3.196 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.202 1.202 24 C 0.004 3.996 25 C -0.001 4.001 26 C -0.202 4.202 27 C -0.100 4.100 28 C -0.186 4.186 29 C -0.061 4.061 30 N -0.196 5.196 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.032 0.968 46 H 0.207 0.793 47 H 0.061 0.939 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.134 0.866 51 H 0.171 0.829 52 H 0.184 0.816 53 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.260 -22.570 -20.072 31.592 hybrid contribution 0.481 1.783 0.200 1.858 sum -8.779 -20.787 -19.872 30.067 Atomic orbital electron populations 1.21761 0.95106 1.02193 1.01787 1.21434 0.96212 0.94717 1.02572 1.21402 0.90525 0.98362 1.02753 1.20263 0.98130 0.91843 0.97174 0.85980 1.20741 0.80839 0.91409 0.75992 1.90683 1.56203 1.46430 1.51901 1.48180 1.13812 1.08496 1.62928 1.21984 0.94977 0.88874 0.95484 1.21900 1.00883 0.97284 0.96453 1.21442 0.97454 0.93921 1.01520 1.21477 0.98030 0.95068 0.96711 0.92937 1.20709 0.95925 0.93698 0.86416 1.42523 1.70516 1.21035 1.04425 1.19603 1.28941 0.96382 0.93030 0.90755 1.25582 1.03402 1.02075 0.95687 1.69811 1.54231 1.38162 0.99789 0.85193 0.78632 0.79442 0.76379 1.20580 1.22020 1.20168 1.21439 0.98865 0.83254 0.95999 1.20347 0.96080 0.90162 0.93525 1.22035 1.02215 1.01133 0.94825 1.21882 0.94244 0.96185 0.97736 1.22511 1.00593 0.94294 1.01190 1.23306 0.93712 1.01584 0.87536 1.67449 1.11347 1.11062 1.29764 0.92613 0.93129 0.91632 0.92231 0.91102 0.91511 0.92214 0.90055 0.87967 0.92216 0.88363 0.93320 0.91219 0.95384 0.96827 0.79307 0.93946 0.90590 0.89861 0.86583 0.82946 0.81609 0.79758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.11 -1.86 5.73 30.59 0.18 -1.68 16 3 C -0.09 -1.90 4.05 30.59 0.12 -1.78 16 4 C -0.05 -1.09 1.69 -12.29 -0.02 -1.11 16 5 H 0.12 2.25 6.26 -2.39 -0.01 2.24 16 6 C 0.52 13.98 5.54 87.66 0.49 14.47 16 7 O -0.57 -19.44 15.18 -3.03 -0.05 -19.49 16 8 N -0.60 -15.19 2.97 -818.91 -2.43 -17.62 16 9 C 0.11 2.14 6.24 86.37 0.54 2.68 16 10 C -0.13 -2.85 6.08 30.67 0.19 -2.66 16 11 C -0.11 -3.16 5.05 30.62 0.15 -3.00 16 12 C -0.09 -3.13 2.38 -10.72 -0.03 -3.15 16 13 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 14 C 0.16 6.59 5.65 86.38 0.49 7.08 16 15 N -0.74 -38.76 5.32 -343.46 -1.83 -40.59 16 16 C -0.25 -14.18 9.99 84.04 0.84 -13.34 16 17 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 19 N -0.97 -60.17 13.06 21.65 0.28 -59.88 16 20 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 C 0.13 3.67 5.72 86.36 0.49 4.16 16 25 C 0.14 2.63 4.86 42.55 0.21 2.84 16 26 C -0.18 -3.55 9.18 22.36 0.21 -3.34 16 27 C -0.07 -1.03 10.18 22.47 0.23 -0.80 16 28 C -0.17 -1.69 10.11 22.36 0.23 -1.46 16 29 C 0.10 1.14 11.18 84.67 0.95 2.09 16 30 N -0.49 -8.29 9.64 -183.88 -1.77 -10.06 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.05 6.92 -2.39 -0.02 1.03 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.38 8.07 -2.39 -0.02 1.36 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.70 5.41 -2.39 -0.01 1.69 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.05 1.77 7.15 -2.39 -0.02 1.75 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.37 20.71 6.85 -92.71 -0.63 20.08 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.08 2.47 7.00 -2.39 -0.02 2.45 16 49 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.12 2.69 6.91 -2.91 -0.02 2.67 16 51 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 52 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 53 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -72.00 416.82 2.92 -69.08 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.25 Total: 34.17 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 6.44 Total: -4.47 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -5.75 Total: -128.16 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -72.00 2.92 -69.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491169018.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.819 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds