Wall clock time and date at job start Wed Apr 1 2020 04:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.53005 * 109.47452 * 184.99601 * 3 2 1 6 6 N 1.46501 * 109.47085 * 184.99949 * 5 3 2 7 7 C 1.34776 * 119.99681 * 180.02562 * 6 5 3 8 8 O 1.21280 * 119.99923 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00252 * 179.97438 * 7 6 5 10 10 H 1.08997 * 110.28783 * 299.33215 * 9 7 6 11 11 C 1.54379 * 110.32089 * 61.45395 * 9 7 6 12 12 N 1.48554 * 104.59562 * 95.04540 * 11 9 7 13 13 C 1.46906 * 111.00325 * 159.03840 * 12 11 9 14 14 C 1.48558 * 104.22014 * 39.48463 * 12 11 9 15 15 C 1.54256 * 110.32804 * 177.09090 * 9 7 6 16 16 H 1.09000 * 110.32152 * 0.02562 * 15 9 7 17 17 C 1.50702 * 110.32296 * 122.21171 * 15 9 7 18 18 C 1.38227 * 120.00383 * 59.72616 * 17 15 9 19 19 C 1.38231 * 120.00434 * 179.81091 * 18 17 15 20 20 C 1.38238 * 119.99705 * 0.39925 * 19 18 17 21 21 C 1.38239 * 119.99886 * 359.85346 * 20 19 18 22 22 C 1.38230 * 120.00199 * 359.96058 * 21 20 19 23 23 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 24 24 C 1.36936 * 119.99838 * 275.00217 * 23 3 2 25 25 H 1.07999 * 120.00085 * 0.02562 * 24 23 3 26 26 C 1.38815 * 119.99824 * 179.97438 * 24 23 3 27 27 N 1.31614 * 119.99977 * 180.02562 * 26 24 23 28 28 Si 1.86797 * 119.99851 * 0.02562 * 26 24 23 29 29 H 1.48510 * 109.47172 * 90.00024 * 28 26 24 30 30 H 1.48505 * 109.47204 * 209.99615 * 28 26 24 31 31 H 1.48497 * 109.47650 * 329.99971 * 28 26 24 32 32 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 33 33 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 35 35 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 36 36 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 37 37 H 1.09000 * 109.46872 * 305.00625 * 5 3 2 38 38 H 1.09001 * 109.46455 * 65.00085 * 5 3 2 39 39 H 0.96998 * 120.00018 * 0.02562 * 6 5 3 40 40 H 1.08998 * 110.41268 * 213.82533 * 11 9 7 41 41 H 1.08999 * 110.41579 * 336.14590 * 11 9 7 42 42 H 1.09000 * 109.46743 * 60.12734 * 13 12 11 43 43 H 1.08994 * 109.46999 * 180.12672 * 13 12 11 44 44 H 1.08996 * 109.46988 * 300.13210 * 13 12 11 45 45 H 1.08997 * 110.41250 * 79.29706 * 14 12 11 46 46 H 1.09009 * 110.41317 * 201.62126 * 14 12 11 47 47 H 1.08008 * 120.00122 * 359.97438 * 18 17 15 48 48 H 1.07997 * 120.00752 * 180.23374 * 19 18 17 49 49 H 1.07997 * 120.00355 * 179.83365 * 20 19 18 50 50 H 1.08005 * 120.00053 * 179.97438 * 21 20 19 51 51 H 1.07993 * 120.00421 * 180.02562 * 22 21 20 52 52 H 0.97000 * 119.99812 * 94.99561 * 23 3 2 53 53 H 0.97001 * 119.99985 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1256 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0867 8 8 6.1634 2.1484 -0.2590 9 6 5.8983 4.4748 0.0359 10 1 5.4845 5.0973 -0.7574 11 6 5.5368 5.0582 1.4188 12 7 6.7406 4.8140 2.2544 13 6 6.7696 5.7171 3.4127 14 6 7.8802 5.0838 1.3403 15 6 7.4399 4.4916 -0.0157 16 1 7.8259 3.4787 -0.1302 17 6 7.9162 5.3651 -1.1476 18 6 7.5745 6.7041 -1.1784 19 6 8.0146 7.5062 -2.2146 20 6 8.7896 6.9673 -3.2245 21 6 9.1270 5.6270 -3.1965 22 6 8.6900 4.8258 -2.1583 23 7 1.6524 2.0975 1.2518 24 6 0.4156 2.6735 1.3687 25 1 -0.2742 2.6446 0.5382 26 6 0.0482 3.2938 2.5550 27 7 -1.1408 3.8470 2.6675 28 14 1.2411 3.3432 3.9915 29 1 2.0763 4.5678 3.8996 30 1 0.4802 3.3577 5.2667 31 1 2.1155 2.1437 3.9505 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.9954 0.8310 0.6660 38 1 3.8499 1.0377 -1.0959 39 1 3.4411 3.5483 0.1316 40 1 5.3389 6.1272 1.3405 41 1 4.6718 4.5419 1.8350 42 1 5.8826 5.5521 4.0243 43 1 7.6621 5.5184 4.0060 44 1 6.7856 6.7507 3.0671 45 1 8.0490 6.1568 1.2497 46 1 8.7815 4.5869 1.6994 47 1 6.9658 7.1244 -0.3914 48 1 7.7508 8.5532 -2.2367 49 1 9.1313 7.5933 -4.0355 50 1 9.7322 5.2059 -3.9857 51 1 8.9539 3.7789 -2.1361 52 1 2.2719 2.1231 1.9978 53 1 -1.3974 4.2807 3.4963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495059171.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:26 Heat of formation + Delta-G solvation = -17.819068 kcal Electronic energy + Delta-G solvation = -31200.144201 eV Core-core repulsion = 27263.669301 eV Total energy + Delta-G solvation = -3936.474900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.72514 -40.13583 -38.95472 -38.24811 -35.29984 -34.27361 -34.16993 -32.09245 -31.85983 -31.71829 -29.72744 -29.01578 -26.82573 -25.41894 -24.38345 -23.68802 -23.37735 -22.56544 -21.75069 -21.43946 -20.56685 -19.59810 -18.40340 -17.81790 -17.12163 -17.09080 -16.68872 -16.36908 -16.03625 -15.83778 -15.73454 -15.42909 -15.19360 -14.90036 -14.72144 -14.58527 -14.38968 -14.23341 -14.16276 -13.92189 -13.85879 -13.41447 -13.12687 -13.08610 -12.91127 -12.83881 -12.62275 -12.55128 -12.42012 -12.34676 -12.16558 -12.09432 -11.87322 -11.72479 -11.65579 -11.61002 -11.42318 -10.97465 -10.80107 -10.03184 -9.82061 -9.65539 -9.47795 -9.28329 -7.94595 -5.26305 0.42401 0.50890 1.39268 1.43165 1.47981 1.63767 2.22809 2.52184 2.84038 2.95386 3.36499 3.42283 3.54424 3.61310 3.75130 3.89660 3.98727 4.03328 4.14828 4.21980 4.26262 4.30552 4.32813 4.39526 4.44605 4.46522 4.51480 4.56363 4.57592 4.64093 4.71365 4.76278 4.77050 4.82439 4.88636 4.95821 5.05824 5.07753 5.11575 5.12888 5.19236 5.21849 5.46533 5.55095 5.57499 5.63959 5.72254 5.73027 5.74283 5.88189 5.95535 6.12624 6.28022 6.57914 7.13846 7.24319 7.88794 8.07602 9.26479 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.003164 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.025268 B = 8846.626304 C = 9982.779382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.061 0.939 5 C 0.122 3.878 6 N -0.716 5.716 7 C 0.524 3.476 8 O -0.575 6.575 9 C -0.100 4.100 10 H 0.119 0.881 11 C 0.040 3.960 12 N -0.534 5.534 13 C 0.013 3.987 14 C 0.047 3.953 15 C -0.038 4.038 16 H 0.090 0.910 17 C -0.082 4.082 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.126 4.126 23 N -0.745 5.745 24 C -0.203 4.203 25 H 0.070 0.930 26 C -0.058 4.058 27 N -0.982 5.982 28 Si 0.938 3.062 29 H -0.275 1.275 30 H -0.307 1.307 31 H -0.265 1.265 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.410 0.590 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.126 0.874 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.139 0.861 51 H 0.120 0.880 52 H 0.362 0.638 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.597 6.282 -9.228 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.367 5.367 7 C 0.311 3.689 8 O -0.455 6.455 9 C -0.121 4.121 10 H 0.137 0.863 11 C -0.088 4.088 12 N -0.258 5.258 13 C -0.135 4.135 14 C -0.080 4.080 15 C -0.057 4.057 16 H 0.108 0.892 17 C -0.082 4.082 18 C -0.141 4.141 19 C -0.141 4.141 20 C -0.146 4.146 21 C -0.142 4.142 22 C -0.144 4.144 23 N -0.389 5.389 24 C -0.334 4.334 25 H 0.087 0.913 26 C -0.249 4.249 27 N -0.634 5.634 28 Si 0.768 3.232 29 H -0.201 1.201 30 H -0.235 1.235 31 H -0.191 1.191 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.246 0.754 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.144 0.856 48 H 0.159 0.841 49 H 0.160 0.840 50 H 0.156 0.844 51 H 0.138 0.862 52 H 0.195 0.805 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.941 5.149 -9.179 24.335 hybrid contribution -0.363 1.026 1.161 1.591 sum 21.578 6.175 -8.018 23.833 Atomic orbital electron populations 1.21688 0.96255 1.00442 1.01637 1.21970 0.96211 0.97117 1.01597 1.20683 0.91135 0.93265 0.88796 0.92120 1.21585 0.93782 0.83039 1.01896 1.45986 1.07309 1.10554 1.72809 1.20624 0.81951 0.91433 0.74908 1.90610 1.56490 1.47335 1.51087 1.22120 0.97023 0.93329 0.99674 0.86312 1.23140 0.94458 1.00395 0.90837 1.65349 1.02237 1.50885 1.07323 1.22550 1.03269 0.94331 0.93379 1.23236 0.94643 0.99769 0.90387 1.20772 0.92206 0.99853 0.92915 0.89182 1.19752 0.98436 0.94254 0.95764 1.21135 1.00519 0.93069 0.99380 1.21428 0.97804 1.00720 0.94166 1.21484 0.98317 0.95499 0.99276 1.21417 1.00052 0.94351 0.98400 1.21260 0.98338 1.00235 0.94612 1.42828 1.15391 1.67630 1.13046 1.18959 0.91355 1.24730 0.98348 0.91259 1.25247 0.97832 1.01638 1.00170 1.69846 1.21590 1.44707 1.27215 0.85667 0.79041 0.78516 0.79981 1.20092 1.23461 1.19092 0.93817 0.92801 0.93510 0.90317 0.92881 0.92613 0.90040 0.75400 0.90712 0.91024 0.91912 0.90073 0.93762 0.91777 0.89658 0.85582 0.84140 0.83969 0.84354 0.86238 0.80492 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.18 71.98 0.66 -4.30 16 2 C -0.13 -4.01 5.61 30.59 0.17 -3.84 16 3 C 0.17 5.70 2.59 44.99 0.12 5.81 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 3.69 5.23 86.38 0.45 4.14 16 6 N -0.72 -21.46 5.08 -463.05 -2.35 -23.81 16 7 C 0.52 15.95 7.11 87.66 0.62 16.58 16 8 O -0.58 -20.89 15.26 -3.03 -0.05 -20.94 16 9 C -0.10 -2.41 2.88 -10.65 -0.03 -2.44 16 10 H 0.12 2.54 7.36 -2.39 -0.02 2.52 16 11 C 0.04 0.96 5.99 86.45 0.52 1.48 16 12 N -0.53 -12.81 5.66 -907.64 -5.14 -17.95 16 13 C 0.01 0.26 9.53 127.69 1.22 1.47 16 14 C 0.05 0.97 5.93 86.45 0.51 1.49 16 15 C -0.04 -0.87 2.87 -10.65 -0.03 -0.91 16 16 H 0.09 2.52 6.25 -2.39 -0.01 2.51 16 17 C -0.08 -1.66 4.74 -19.87 -0.09 -1.75 16 18 C -0.12 -2.15 8.16 22.27 0.18 -1.97 16 19 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 20 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 21 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 22 C -0.13 -2.52 9.68 22.27 0.22 -2.30 16 23 N -0.75 -31.02 4.31 -322.92 -1.39 -32.42 16 24 C -0.20 -10.37 8.24 84.03 0.69 -9.67 16 25 H 0.07 3.87 7.55 -2.91 -0.02 3.85 16 26 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 27 N -0.98 -60.06 13.97 21.65 0.30 -59.75 16 28 Si 0.94 44.03 27.74 68.60 1.90 45.93 16 29 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 30 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 31 H -0.27 -11.77 6.52 99.48 0.65 -11.12 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.46 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.41 12.23 7.92 -92.71 -0.73 11.50 16 40 H 0.07 1.49 7.97 -2.39 -0.02 1.47 16 41 H 0.07 2.03 7.42 -2.39 -0.02 2.01 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.04 0.73 7.97 -2.39 -0.02 0.71 16 45 H 0.06 1.13 6.57 -2.39 -0.02 1.11 16 46 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 47 H 0.13 1.94 7.67 -2.91 -0.02 1.92 16 48 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 50 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 51 H 0.12 2.38 7.97 -2.91 -0.02 2.36 16 52 H 0.36 15.29 5.66 -92.71 -0.52 14.77 16 53 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -66.55 416.28 -0.80 -67.34 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -0.42 Total: 45.61 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.34 Total: -4.01 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -8.58 Total: -133.93 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Total: -66.55 -0.80 -67.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495059171.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.524 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds