Wall clock time and date at job start Wed Apr 1 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 C 1.53002 * 109.46861 * 120.00160 * 2 1 3 5 5 H 1.09001 * 109.47187 * 303.83301 * 4 2 1 6 6 C 1.50695 * 109.47346 * 63.83692 * 4 2 1 7 7 O 1.21282 * 120.00201 * 94.37423 * 6 4 2 8 8 N 1.34776 * 119.99884 * 274.65406 * 6 4 2 9 9 C 1.46500 * 120.00049 * 185.22591 * 8 6 4 10 10 C 1.53000 * 109.46665 * 87.42152 * 9 8 6 11 11 N 1.46496 * 110.02308 * 54.54776 * 10 9 8 12 12 C 1.36942 * 119.99738 * 294.81054 * 11 10 9 13 13 H 1.07999 * 119.99910 * 359.36153 * 12 11 10 14 14 C 1.38810 * 119.99876 * 179.36165 * 12 11 10 15 15 N 1.31620 * 120.00216 * 5.25883 * 14 12 11 16 16 Si 1.86796 * 119.99960 * 185.25716 * 14 12 11 17 17 H 1.48502 * 109.47268 * 94.97200 * 16 14 12 18 18 H 1.48505 * 109.47308 * 214.97710 * 16 14 12 19 19 H 1.48502 * 109.47199 * 334.97309 * 16 14 12 20 20 C 1.54264 * 110.03326 * 293.10254 * 10 9 8 21 21 C 1.54887 * 104.19853 * 217.10950 * 20 10 9 22 22 C 1.54888 * 102.75013 * 37.94101 * 21 20 10 23 23 C 1.53878 * 110.03149 * 175.94092 * 10 9 8 24 24 C 1.50703 * 109.47000 * 183.83918 * 4 2 1 25 25 C 1.38664 * 120.42190 * 120.00105 * 24 4 2 26 26 C 1.38627 * 118.42218 * 180.02562 * 25 24 4 27 27 C 1.38227 * 119.16113 * 359.97438 * 26 25 24 28 28 N 1.31859 * 120.76083 * 0.02562 * 27 26 25 29 29 C 1.31877 * 121.72742 * 359.70131 * 28 27 26 30 30 H 1.09003 * 109.47205 * 300.53122 * 1 2 3 31 31 H 1.08999 * 109.47181 * 60.52661 * 1 2 3 32 32 H 1.08996 * 109.47468 * 180.52518 * 1 2 3 33 33 H 1.08998 * 109.46843 * 240.00283 * 2 1 3 34 34 H 1.09007 * 109.46942 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47195 * 300.00164 * 3 2 1 36 36 H 1.09004 * 109.47214 * 60.00015 * 3 2 1 37 37 H 0.97002 * 120.00164 * 5.22612 * 8 6 4 38 38 H 1.09003 * 109.47063 * 207.41927 * 9 8 6 39 39 H 1.08998 * 109.47195 * 327.42222 * 9 8 6 40 40 H 0.97001 * 120.00510 * 114.79903 * 11 10 9 41 41 H 0.97001 * 119.99867 * 180.02562 * 15 14 12 42 42 H 1.09006 * 110.48615 * 335.78648 * 20 10 9 43 43 H 1.08999 * 110.48800 * 98.42768 * 20 10 9 44 44 H 1.09007 * 110.75645 * 279.62801 * 21 20 10 45 45 H 1.09005 * 110.76220 * 156.25879 * 21 20 10 46 46 H 1.09000 * 110.48936 * 203.38342 * 22 21 20 47 47 H 1.09004 * 110.48668 * 80.73642 * 22 21 20 48 48 H 1.09002 * 110.02936 * 238.56920 * 23 10 9 49 49 H 1.09002 * 110.03444 * 359.97438 * 23 10 9 50 50 H 1.08000 * 120.78966 * 359.97198 * 25 24 4 51 51 H 1.08003 * 120.42330 * 180.02562 * 26 25 24 52 52 H 1.07994 * 119.61771 * 179.97438 * 27 26 25 53 53 H 1.07997 * 119.62343 * 180.31112 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6216 -0.2487 2.1379 6 6 1.6167 -2.1669 1.2026 7 8 2.3689 -3.0047 0.7519 8 7 0.4002 -2.5278 1.6566 9 6 0.0319 -3.9444 1.7180 10 6 0.4853 -4.5316 3.0562 11 7 -0.0563 -3.7374 4.1616 12 6 0.3418 -2.4380 4.3303 13 1 1.0626 -2.0020 3.6546 14 6 -0.1813 -1.6813 5.3699 15 7 -0.9796 -2.2407 6.2543 16 14 0.2477 0.1311 5.5137 17 1 -0.8101 0.9435 4.8608 18 1 0.3446 0.5046 6.9477 19 1 1.5499 0.3859 4.8468 20 6 2.0260 -4.5567 3.1274 21 6 2.3504 -5.8741 3.8745 22 6 1.2878 -6.8536 3.3175 23 6 0.0159 -5.9920 3.1770 24 6 3.5440 -0.6395 1.2978 25 6 4.1797 -0.0286 2.3680 26 6 5.5650 0.0240 2.3700 27 6 6.2616 -0.5309 1.3128 28 7 5.6234 -1.1041 0.3114 29 6 4.3071 -1.1770 0.2788 30 1 -0.3634 0.5221 0.8852 31 1 -0.3633 0.5056 -0.8947 32 1 -0.3634 -1.0276 0.0094 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 -0.2316 -1.8496 1.9427 38 1 -1.0497 -4.0430 1.6258 39 1 0.5165 -4.4815 0.9027 40 1 -0.6968 -4.1317 4.7740 41 1 -1.3453 -1.7118 6.9805 42 1 2.4541 -4.5714 2.1250 43 1 2.3961 -3.6987 3.6886 44 1 2.2322 -5.7470 4.9507 45 1 3.3565 -6.2175 3.6333 46 1 1.1189 -7.6718 4.0175 47 1 1.5965 -7.2392 2.3458 48 1 -0.6142 -6.1099 4.0587 49 1 -0.5353 -6.2824 2.2826 50 1 3.6092 0.3970 3.1803 51 1 6.0934 0.4918 3.1875 52 1 7.3409 -0.4937 1.3066 53 1 3.8196 -1.6587 -0.5559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495961198.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:34 Heat of formation + Delta-G solvation = -17.751402 kcal Electronic energy + Delta-G solvation = -33233.570155 eV Core-core repulsion = 29297.098189 eV Total energy + Delta-G solvation = -3936.471966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.87015 -40.65368 -39.27467 -37.09588 -35.69489 -34.81464 -33.47506 -32.36432 -32.29706 -30.06922 -29.46052 -28.23950 -27.92354 -25.76365 -25.01932 -24.56750 -23.38800 -21.74882 -21.60621 -20.82727 -19.96807 -18.90931 -18.32575 -18.06692 -17.40990 -16.92302 -16.63661 -16.47282 -16.02950 -15.80222 -15.73034 -15.27349 -15.13431 -14.88914 -14.54974 -14.40067 -14.11526 -14.00851 -13.87285 -13.65139 -13.47507 -13.31508 -13.22722 -13.03342 -12.84945 -12.79821 -12.39597 -12.26686 -12.10340 -11.96158 -11.88245 -11.83812 -11.72765 -11.68632 -11.59422 -11.50909 -11.33412 -10.86451 -10.81727 -10.44981 -10.38332 -9.86116 -9.62205 -8.83564 -7.83430 -5.06806 0.18136 0.34535 1.44748 1.46795 1.54333 1.77849 2.46833 2.60756 2.93204 3.42872 3.48310 3.68754 3.72017 3.83883 3.87440 3.89994 4.00814 4.01781 4.10896 4.15222 4.19817 4.25990 4.36020 4.46965 4.50835 4.60111 4.66502 4.68338 4.70314 4.80137 4.82233 4.88343 4.90442 4.93843 4.97356 5.00074 5.05603 5.13352 5.16358 5.18389 5.19324 5.30288 5.31031 5.37987 5.41930 5.47005 5.55364 5.59672 5.69177 5.79053 5.80693 6.39914 6.78449 7.04894 7.44684 7.44969 8.22717 8.48194 9.40763 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008709 B = 0.005340 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.225897 B = 5241.949813 C = 6216.466169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.061 4.061 5 H 0.092 0.908 6 C 0.523 3.477 7 O -0.569 6.569 8 N -0.694 5.694 9 C 0.114 3.886 10 C 0.177 3.823 11 N -0.720 5.720 12 C -0.200 4.200 13 H 0.084 0.916 14 C -0.078 4.078 15 N -0.971 5.971 16 Si 0.938 3.062 17 H -0.283 1.283 18 H -0.312 1.312 19 H -0.262 1.262 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.085 4.085 26 C -0.171 4.171 27 C 0.086 3.914 28 N -0.511 5.511 29 C 0.125 3.875 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.407 0.593 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.370 0.630 41 H 0.243 0.757 42 H 0.070 0.930 43 H 0.025 0.975 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.085 0.915 50 H 0.132 0.868 51 H 0.161 0.839 52 H 0.182 0.818 53 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 3.008 -12.565 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.083 4.083 5 H 0.110 0.890 6 C 0.310 3.690 7 O -0.449 6.449 8 N -0.342 5.342 9 C -0.012 4.012 10 C 0.086 3.914 11 N -0.359 5.359 12 C -0.332 4.332 13 H 0.101 0.899 14 C -0.269 4.269 15 N -0.623 5.623 16 Si 0.769 3.231 17 H -0.210 1.210 18 H -0.240 1.240 19 H -0.186 1.186 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.157 4.157 24 C -0.120 4.120 25 C -0.111 4.111 26 C -0.191 4.191 27 C -0.071 4.071 28 N -0.220 5.220 29 C -0.031 4.031 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.243 0.757 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.203 0.797 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.076 0.924 49 H 0.103 0.897 50 H 0.150 0.850 51 H 0.179 0.821 52 H 0.199 0.801 53 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.815 2.205 -13.600 15.371 hybrid contribution -0.958 1.509 2.154 2.799 sum 5.857 3.713 -11.445 13.383 Atomic orbital electron populations 1.22020 0.93567 1.02548 1.03328 1.21025 0.96803 0.96694 0.94713 1.21796 1.00563 0.94438 1.02871 1.20390 0.92209 0.93595 1.02154 0.89013 1.20343 0.81508 0.90364 0.76818 1.90587 1.53209 1.53271 1.47844 1.45902 1.15721 1.09208 1.63406 1.22061 0.99996 0.81567 0.97610 1.20894 0.91715 0.90663 0.88129 1.42764 1.51114 1.10664 1.31377 1.19613 1.17190 0.88446 1.07964 0.89864 1.25335 1.02091 1.01095 0.98414 1.69818 1.39613 1.35772 1.17095 0.85622 0.78489 0.82817 0.76163 1.20981 1.24036 1.18641 1.22839 0.97503 0.96318 0.99566 1.22394 0.98770 0.95913 0.98716 1.22257 0.94159 0.97065 1.01241 1.22322 0.98015 0.93172 1.02144 1.20353 0.95220 1.00132 0.96302 1.21756 0.95848 0.96599 0.96939 1.22379 0.94119 1.01618 1.00968 1.23252 1.01713 0.92982 0.89126 1.67719 1.10470 1.16361 1.27446 1.22520 0.89030 0.93941 0.97634 0.92116 0.90187 0.92553 0.90592 0.93486 0.90541 0.92357 0.75708 0.90071 0.90668 0.79718 0.94780 0.91151 0.95570 0.93986 0.91990 0.91009 0.90472 0.92377 0.89691 0.85012 0.82131 0.80083 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 8.51 71.98 0.61 -2.63 16 2 C -0.07 -1.67 2.27 -10.79 -0.02 -1.70 16 3 C -0.14 -2.79 8.89 71.98 0.64 -2.15 16 4 C -0.06 -1.78 1.98 -12.29 -0.02 -1.80 16 5 H 0.09 2.81 7.87 -2.39 -0.02 2.80 16 6 C 0.52 17.37 4.77 87.66 0.42 17.79 16 7 O -0.57 -21.44 11.67 -3.04 -0.04 -21.48 16 8 N -0.69 -22.66 2.15 -463.06 -1.00 -23.65 16 9 C 0.11 3.70 5.10 86.38 0.44 4.14 16 10 C 0.18 6.48 0.95 4.33 0.00 6.49 16 11 N -0.72 -32.53 5.17 -300.08 -1.55 -34.08 16 12 C -0.20 -9.73 7.17 84.03 0.60 -9.12 16 13 H 0.08 3.91 5.05 -2.91 -0.01 3.89 16 14 C -0.08 -4.11 5.50 84.86 0.47 -3.65 16 15 N -0.97 -56.36 13.07 21.65 0.28 -56.08 16 16 Si 0.94 42.25 29.56 68.60 2.03 44.28 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 C -0.12 -4.82 4.81 31.67 0.15 -4.66 16 21 C -0.12 -4.16 6.91 31.88 0.22 -3.94 16 22 C -0.11 -3.11 6.83 31.67 0.22 -2.90 16 23 C -0.12 -3.64 6.24 31.32 0.20 -3.45 16 24 C -0.12 -3.53 3.21 -19.77 -0.06 -3.59 16 25 C -0.09 -2.43 9.81 22.46 0.22 -2.21 16 26 C -0.17 -4.11 10.11 22.36 0.23 -3.88 16 27 C 0.09 2.12 11.18 84.69 0.95 3.07 16 28 N -0.51 -15.53 10.36 -195.85 -2.03 -17.56 16 29 C 0.13 3.89 9.13 84.67 0.77 4.66 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.25 6.16 -2.39 -0.01 1.24 16 33 H 0.08 1.76 7.57 -2.39 -0.02 1.74 16 34 H 0.05 1.02 7.10 -2.38 -0.02 1.00 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 13.27 7.07 -92.71 -0.66 12.61 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.08 2.39 7.32 -2.39 -0.02 2.37 16 40 H 0.37 18.54 7.29 -92.71 -0.68 17.87 16 41 H 0.24 14.05 8.31 -92.71 -0.77 13.27 16 42 H 0.07 2.83 5.47 -2.38 -0.01 2.82 16 43 H 0.03 1.20 6.72 -2.39 -0.02 1.19 16 44 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 48 H 0.06 1.92 7.46 -2.39 -0.02 1.91 16 49 H 0.08 2.18 7.67 -2.39 -0.02 2.16 16 50 H 0.13 3.69 8.00 -2.91 -0.02 3.67 16 51 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 52 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 53 H 0.15 4.66 6.93 -2.91 -0.02 4.64 16 Total: -1.00 -63.68 402.06 3.31 -60.37 By element: Atomic # 1 Polarization: 58.14 SS G_CDS: -0.41 Total: 57.72 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 6.02 Total: -9.52 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -4.29 Total: -131.38 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.04 Total: -21.48 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -63.68 3.31 -60.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495961198.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.622 kcal (2) G-P(sol) polarization free energy of solvation -63.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds