Wall clock time and date at job start Wed Apr 1 2020 03:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 C 1.52996 * 109.46903 * 119.99619 * 2 1 3 5 5 H 1.09000 * 109.47521 * 185.00184 * 4 2 1 6 6 C 1.53003 * 109.47332 * 305.00350 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 H 1.09000 * 110.29179 * 300.69638 * 10 8 7 12 12 C 1.54258 * 110.32804 * 62.82882 * 10 8 7 13 13 C 1.54377 * 105.06521 * 118.88823 * 12 10 8 14 14 N 1.48559 * 104.59226 * 23.86018 * 13 12 10 15 15 C 1.39680 * 111.00253 * 200.95801 * 14 13 12 16 16 C 1.38909 * 120.07611 * 119.83907 * 15 14 13 17 17 C 1.38104 * 119.92491 * 179.76807 * 16 15 14 18 18 C 1.38292 * 120.07065 * 0.51974 * 17 16 15 19 19 C 1.38281 * 120.15079 * 359.73643 * 18 17 16 20 20 C 1.38097 * 120.07620 * 0.02562 * 19 18 17 21 21 C 1.48730 * 104.28741 * 320.56768 * 14 13 12 22 22 N 1.46505 * 109.47130 * 65.00098 * 4 2 1 23 23 C 1.36931 * 119.99788 * 84.99932 * 22 4 2 24 24 H 1.08002 * 120.00438 * 0.02562 * 23 22 4 25 25 C 1.38817 * 119.99680 * 179.72358 * 23 22 4 26 26 N 1.31614 * 119.99888 * 0.27479 * 25 23 22 27 27 Si 1.86803 * 119.99862 * 180.27671 * 25 23 22 28 28 H 1.48508 * 109.46872 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 119.99997 * 27 25 23 30 30 H 1.48498 * 109.47018 * 240.00044 * 27 25 23 31 31 H 1.09003 * 109.47634 * 300.00560 * 1 2 3 32 32 H 1.09004 * 109.47209 * 60.00264 * 1 2 3 33 33 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.47301 * 239.99518 * 2 1 3 35 35 H 1.08998 * 109.47742 * 59.99451 * 3 2 1 36 36 H 1.09004 * 109.47296 * 180.02562 * 3 2 1 37 37 H 1.09006 * 109.47144 * 299.99494 * 3 2 1 38 38 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 39 39 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 40 40 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 41 41 H 1.09003 * 110.32687 * 237.79251 * 12 10 8 42 42 H 1.09001 * 110.32108 * 359.89280 * 12 10 8 43 43 H 1.09003 * 110.40992 * 142.62697 * 13 12 10 44 44 H 1.08997 * 110.41737 * 264.96048 * 13 12 10 45 45 H 1.07997 * 120.03803 * 0.02562 * 16 15 14 46 46 H 1.07996 * 119.96676 * 180.25310 * 17 16 15 47 47 H 1.08000 * 119.92190 * 179.72457 * 18 17 16 48 48 H 1.08005 * 119.96171 * 180.02562 * 19 18 17 49 49 H 1.08005 * 120.04323 * 180.02562 * 20 19 18 50 50 H 1.09000 * 110.38910 * 280.64489 * 21 14 13 51 51 H 1.08994 * 110.50943 * 158.14931 * 21 14 13 52 52 H 0.97000 * 119.99792 * 264.99726 * 22 4 2 53 53 H 0.97005 * 119.99715 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0761 2.4953 7 7 1.8226 -0.8394 3.6825 8 6 1.3984 -0.4539 4.9023 9 8 0.6920 0.5252 5.0173 10 6 1.8021 -1.2395 6.1233 11 1 1.4594 -2.2708 6.0396 12 6 3.3332 -1.1967 6.3061 13 6 3.5551 -0.5181 7.6748 14 7 2.2917 -0.7554 8.4195 15 6 2.1420 0.1665 9.4581 16 6 1.0450 1.0183 9.4801 17 6 0.8975 1.9254 10.5110 18 6 1.8462 1.9936 11.5149 19 6 2.9422 1.1507 11.4932 20 6 3.0932 0.2380 10.4679 21 6 1.2253 -0.5846 7.3970 22 7 1.6523 -2.1328 1.1907 23 6 2.4345 -3.0300 0.5136 24 1 3.3373 -2.6971 0.0232 25 6 2.0702 -4.3685 0.4630 26 7 0.9703 -4.7743 1.0611 27 14 3.1413 -5.5938 -0.4541 28 1 4.3124 -4.8896 -1.0354 29 1 3.6105 -6.6425 0.4868 30 1 2.3520 -6.2232 -1.5432 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8898 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.7895 0.9488 2.5870 39 1 0.3433 -0.0734 2.4081 40 1 2.3872 -1.6228 3.5905 41 1 3.7420 -2.2072 6.3137 42 1 3.7930 -0.6091 5.5115 43 1 4.3952 -0.9779 8.1954 44 1 3.7275 0.5504 7.5460 45 1 0.3060 0.9684 8.6941 46 1 0.0428 2.5851 10.5309 47 1 1.7308 2.7069 12.3176 48 1 3.6810 1.2063 12.2791 49 1 3.9493 -0.4203 10.4518 50 1 1.0300 0.4739 7.2251 51 1 0.3135 -1.0949 7.7072 52 1 0.8417 -2.4318 1.6315 53 1 0.7156 -5.7096 1.0254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496570729.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:39 Heat of formation + Delta-G solvation = -14.278908 kcal Electronic energy + Delta-G solvation = -30545.008640 eV Core-core repulsion = 26608.687254 eV Total energy + Delta-G solvation = -3936.321387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.73516 -40.49833 -38.98808 -38.17775 -35.22397 -35.06091 -33.78143 -32.18907 -32.08203 -30.28227 -29.51903 -28.62178 -27.96323 -25.86986 -24.64508 -23.82436 -23.68094 -22.51142 -21.63665 -20.84382 -19.96475 -19.28128 -18.75987 -17.94217 -17.42419 -16.98871 -16.69893 -16.48122 -16.12549 -15.83071 -15.57666 -15.24141 -15.03086 -14.97407 -14.90613 -14.81427 -14.34278 -14.25742 -14.00044 -13.73560 -13.67909 -13.42369 -13.10356 -12.90855 -12.79747 -12.69707 -12.60089 -12.47884 -12.44671 -12.22832 -12.20958 -12.04861 -11.94444 -11.85713 -11.75231 -11.51682 -11.21454 -10.94626 -10.77145 -10.64134 -9.97779 -9.86079 -8.96237 -8.92170 -7.89329 -5.16945 0.42857 0.48294 1.49258 1.51729 1.59438 1.60707 2.18286 2.58941 2.73164 3.03428 3.35702 3.44622 3.54109 3.81695 3.88545 3.93673 4.01577 4.08059 4.13372 4.22165 4.23605 4.30537 4.35844 4.36890 4.44419 4.50812 4.53123 4.57280 4.63873 4.70140 4.74162 4.82355 4.85152 4.87028 4.91159 4.94711 5.03624 5.09573 5.13004 5.16832 5.22997 5.27337 5.31463 5.48181 5.50555 5.56120 5.61646 5.64920 5.68371 5.81238 5.87151 6.30778 6.31397 6.58911 7.22418 7.39469 8.11782 8.36597 9.33329 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.002412 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.440744 B =11606.094945 C =12912.969515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.172 3.828 5 H 0.057 0.943 6 C 0.119 3.881 7 N -0.707 5.707 8 C 0.518 3.482 9 O -0.584 6.584 10 C -0.112 4.112 11 H 0.115 0.885 12 C -0.110 4.110 13 C 0.043 3.957 14 N -0.470 5.470 15 C 0.082 3.918 16 C -0.186 4.186 17 C -0.105 4.105 18 C -0.149 4.149 19 C -0.101 4.101 20 C -0.144 4.144 21 C 0.048 3.952 22 N -0.725 5.725 23 C -0.227 4.227 24 H 0.076 0.924 25 C -0.069 4.069 26 N -0.965 5.965 27 Si 0.962 3.038 28 H -0.267 1.267 29 H -0.296 1.296 30 H -0.303 1.303 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.411 0.589 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.047 0.953 45 H 0.121 0.879 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.149 0.851 49 H 0.135 0.865 50 H 0.066 0.934 51 H 0.087 0.913 52 H 0.373 0.627 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 13.692 16.567 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.063 3.937 5 H 0.075 0.925 6 C -0.005 4.005 7 N -0.358 5.358 8 C 0.305 3.695 9 O -0.465 6.465 10 C -0.134 4.134 11 H 0.133 0.867 12 C -0.148 4.148 13 C -0.082 4.082 14 N -0.186 5.186 15 C -0.016 4.016 16 C -0.206 4.206 17 C -0.124 4.124 18 C -0.168 4.168 19 C -0.119 4.119 20 C -0.164 4.164 21 C -0.079 4.079 22 N -0.364 5.364 23 C -0.359 4.359 24 H 0.094 0.906 25 C -0.262 4.262 26 N -0.616 5.616 27 Si 0.793 3.207 28 H -0.192 1.192 29 H -0.224 1.224 30 H -0.231 1.231 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.247 0.753 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.066 0.934 45 H 0.139 0.861 46 H 0.154 0.846 47 H 0.162 0.838 48 H 0.166 0.834 49 H 0.153 0.847 50 H 0.084 0.916 51 H 0.106 0.894 52 H 0.205 0.795 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.432 13.740 16.712 22.306 hybrid contribution -0.169 -0.953 -1.118 1.479 sum 5.262 12.786 15.594 20.841 Atomic orbital electron populations 1.21724 0.95811 1.00522 1.01226 1.21625 0.95999 0.96402 0.98964 1.21826 1.01066 0.94750 1.02095 1.20658 0.97317 0.83886 0.91835 0.92546 1.21693 0.99527 0.95138 0.84128 1.45976 1.52305 1.31753 1.05723 1.20754 0.79136 0.84434 0.85201 1.90633 1.39593 1.29348 1.86948 1.22011 0.98754 1.01042 0.91610 0.86695 1.22354 0.92005 1.03557 0.96922 1.23223 0.92062 0.99521 0.93364 1.62601 1.04160 1.44016 1.07801 1.19326 0.96226 0.91219 0.94801 1.21538 1.00337 0.97675 1.01077 1.21299 0.99622 0.97704 0.93764 1.21430 0.94809 1.00821 0.99695 1.21368 0.98146 0.94530 0.97897 1.21019 0.99721 1.01066 0.94594 1.23130 0.95028 1.00842 0.88874 1.42532 1.28013 1.02743 1.63159 1.19546 1.03328 0.88748 1.24230 0.90576 1.25374 0.99066 0.98943 1.02773 1.69809 1.26369 1.15220 1.50178 0.85242 0.78382 0.79517 0.77597 1.19159 1.22369 1.23085 0.92608 0.92419 0.94916 0.92858 0.92255 0.92294 0.92062 0.90400 0.92644 0.75265 0.88072 0.90155 0.87318 0.93413 0.86142 0.84631 0.83832 0.83365 0.84717 0.91607 0.89449 0.79483 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.60 71.98 0.62 -3.77 16 2 C -0.11 -3.47 2.88 -10.80 -0.03 -3.50 16 3 C -0.14 -3.44 8.95 71.98 0.64 -2.80 16 4 C 0.17 5.99 2.22 44.99 0.10 6.09 16 5 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 6 C 0.12 3.84 4.53 86.38 0.39 4.23 16 7 N -0.71 -22.13 5.31 -463.05 -2.46 -24.59 16 8 C 0.52 16.17 6.94 87.66 0.61 16.78 16 9 O -0.58 -21.71 15.44 -3.02 -0.05 -21.75 16 10 C -0.11 -2.83 3.44 -10.64 -0.04 -2.86 16 11 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 12 C -0.11 -2.23 6.60 31.49 0.21 -2.02 16 13 C 0.04 0.85 5.92 86.45 0.51 1.36 16 14 N -0.47 -10.82 5.43 -680.89 -3.70 -14.52 16 15 C 0.08 1.87 5.48 38.21 0.21 2.07 16 16 C -0.19 -4.28 8.82 22.40 0.20 -4.08 16 17 C -0.11 -1.99 10.04 22.25 0.22 -1.77 16 18 C -0.15 -2.37 10.04 22.29 0.22 -2.14 16 19 C -0.10 -1.59 10.04 22.25 0.22 -1.36 16 20 C -0.14 -2.73 9.37 22.40 0.21 -2.52 16 21 C 0.05 1.23 4.61 86.42 0.40 1.63 16 22 N -0.72 -32.24 4.01 -322.93 -1.30 -33.53 16 23 C -0.23 -11.35 9.93 84.04 0.83 -10.52 16 24 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 25 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 26 N -0.96 -55.82 13.06 21.65 0.28 -55.53 16 27 Si 0.96 43.98 29.55 68.60 2.03 46.01 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 30 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 31 H 0.06 1.69 6.23 -2.39 -0.01 1.68 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.26 7.75 -2.39 -0.02 1.24 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.38 6.68 -2.39 -0.02 1.36 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 38 H 0.08 2.31 6.81 -2.38 -0.02 2.29 16 39 H 0.06 1.96 6.06 -2.39 -0.01 1.94 16 40 H 0.41 13.00 8.14 -92.71 -0.75 12.25 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 1.62 7.67 -2.39 -0.02 1.61 16 43 H 0.11 1.68 8.03 -2.39 -0.02 1.66 16 44 H 0.05 0.99 7.98 -2.39 -0.02 0.97 16 45 H 0.12 2.92 5.79 -2.91 -0.02 2.90 16 46 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 47 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 48 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 49 H 0.13 2.14 7.90 -2.91 -0.02 2.12 16 50 H 0.07 1.89 5.07 -2.39 -0.01 1.88 16 51 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.37 18.51 7.80 -92.71 -0.72 17.79 16 53 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -63.20 415.32 0.25 -62.95 By element: Atomic # 1 Polarization: 49.93 SS G_CDS: -0.56 Total: 49.37 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 6.00 Total: -8.40 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -7.17 Total: -128.17 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.20 0.25 -62.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496570729.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.672 kcal (2) G-P(sol) polarization free energy of solvation -63.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds