Wall clock time and date at job start Wed Apr 1 2020 03:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 7 7 N 1.46492 * 109.47631 * 174.99916 * 6 4 2 8 8 C 1.34775 * 120.00395 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00014 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00117 * 180.02562 * 8 7 6 11 11 H 1.08995 * 110.64574 * 61.69811 * 10 8 7 12 12 C 1.54594 * 110.72289 * 298.54327 * 10 8 7 13 13 C 1.53997 * 105.14243 * 219.68735 * 12 10 8 14 14 N 1.47902 * 107.05209 * 358.77335 * 13 12 10 15 15 C 1.39680 * 110.99857 * 145.84684 * 14 13 12 16 16 C 1.38905 * 120.07647 * 239.59883 * 15 14 13 17 17 C 1.38104 * 119.92592 * 179.76563 * 16 15 14 18 18 C 1.38288 * 120.07459 * 0.50796 * 17 16 15 19 19 C 1.38288 * 120.14827 * 359.74059 * 18 17 16 20 20 C 1.38108 * 120.07411 * 0.02562 * 19 18 17 21 21 C 1.48525 * 105.82444 * 25.33463 * 14 13 12 22 22 N 1.46500 * 109.47473 * 299.99988 * 4 2 1 23 23 C 1.36939 * 119.99792 * 84.99599 * 22 4 2 24 24 H 1.08001 * 119.99680 * 0.02562 * 23 22 4 25 25 C 1.38809 * 119.99850 * 179.97438 * 23 22 4 26 26 N 1.31613 * 120.00225 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00107 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.46988 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47350 * 120.00090 * 27 25 23 30 30 H 1.48504 * 109.47178 * 240.00742 * 27 25 23 31 31 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 32 32 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 34 34 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 35 35 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 36 36 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 37 37 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 38 38 H 1.09001 * 109.47317 * 295.00638 * 6 4 2 39 39 H 1.09006 * 109.47194 * 55.00274 * 6 4 2 40 40 H 0.97006 * 119.99812 * 0.02562 * 7 6 4 41 41 H 1.09002 * 110.31092 * 338.60094 * 12 10 8 42 42 H 1.09001 * 110.31034 * 100.76965 * 12 10 8 43 43 H 1.08993 * 109.91606 * 118.12704 * 13 12 10 44 44 H 1.08996 * 109.91722 * 239.42664 * 13 12 10 45 45 H 1.07997 * 120.03870 * 359.97438 * 16 15 14 46 46 H 1.07999 * 119.96244 * 180.24997 * 17 16 15 47 47 H 1.08000 * 119.92639 * 179.77017 * 18 17 16 48 48 H 1.07995 * 119.96148 * 179.97438 * 19 18 17 49 49 H 1.08002 * 120.03488 * 180.02562 * 20 19 18 50 50 H 1.09010 * 110.66887 * 202.35643 * 21 14 13 51 51 H 1.09000 * 110.67355 * 79.22248 * 21 14 13 52 52 H 0.96994 * 119.99975 * 265.00388 * 22 4 2 53 53 H 0.97005 * 120.00673 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 3.5699 -0.7207 -1.2497 7 7 4.0583 -1.5129 -2.3811 8 6 5.3833 -1.6541 -2.5828 9 8 6.1715 -1.1250 -1.8280 10 6 5.8857 -2.4686 -3.7471 11 1 5.5579 -2.0328 -4.6908 12 6 5.4165 -3.9370 -3.6304 13 6 6.6196 -4.7814 -4.0897 14 7 7.6916 -3.8369 -4.4723 15 6 8.9508 -4.3584 -4.1665 16 6 9.7921 -3.6799 -3.2940 17 6 11.0345 -4.2008 -2.9900 18 6 11.4456 -5.3911 -3.5614 19 6 10.6126 -6.0666 -4.4345 20 6 9.3669 -5.5537 -4.7390 21 6 7.4294 -2.5936 -3.7033 22 7 1.5516 -2.1024 -1.2494 23 6 0.3100 -2.3896 -1.7505 24 1 -0.3090 -1.5979 -2.1460 25 6 -0.1525 -3.6984 -1.7511 26 7 0.6021 -4.6632 -1.2696 27 14 -1.8459 -4.0903 -2.4353 28 1 -2.4886 -2.8394 -2.9126 29 1 -1.7142 -5.0418 -3.5677 30 1 -2.6811 -4.7010 -1.3700 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9562 0.8901 36 1 3.1301 1.4425 0.0005 37 1 1.6768 1.9563 -0.8899 38 1 3.9329 0.3031 -1.3394 39 1 3.9337 -1.1549 -0.3184 40 1 3.4279 -1.9358 -2.9851 41 1 5.1621 -4.1719 -2.5968 42 1 4.5600 -4.1134 -4.2811 43 1 6.9597 -5.4182 -3.2731 44 1 6.3388 -5.3918 -4.9480 45 1 9.4737 -2.7478 -2.8511 46 1 11.6875 -3.6758 -2.3085 47 1 12.4191 -5.7944 -3.3249 48 1 10.9368 -6.9957 -4.8793 49 1 8.7167 -6.0820 -5.4206 50 1 7.8986 -1.7363 -4.1862 51 1 7.7780 -2.6960 -2.6756 52 1 2.1077 -2.8134 -0.8944 53 1 0.2788 -5.5778 -1.2696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496570730.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:43 Heat of formation + Delta-G solvation = -15.262393 kcal Electronic energy + Delta-G solvation = -30562.044808 eV Core-core repulsion = 26625.680774 eV Total energy + Delta-G solvation = -3936.364034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.70954 -40.49785 -38.91372 -38.22584 -35.30151 -34.90967 -33.80887 -32.14237 -32.09262 -30.38830 -29.66908 -29.02704 -27.46148 -25.81262 -24.65418 -23.67925 -23.32467 -22.33602 -21.57586 -21.13756 -20.47651 -19.27298 -18.75103 -17.86080 -17.14376 -17.06048 -16.80583 -16.41198 -16.15650 -15.88184 -15.52035 -15.41837 -15.07913 -14.92109 -14.88935 -14.57905 -14.38784 -14.22921 -13.87743 -13.72391 -13.62035 -13.42441 -13.02416 -12.91380 -12.87507 -12.76082 -12.67837 -12.48910 -12.37940 -12.25238 -12.24304 -11.96834 -11.96307 -11.77997 -11.70925 -11.43932 -11.27880 -10.92198 -10.74220 -10.60897 -9.99847 -9.86449 -8.93804 -8.92140 -7.85772 -5.12385 0.42222 0.47912 1.49542 1.52976 1.59522 1.60219 2.18112 2.60723 2.71088 3.02537 3.34765 3.47264 3.51440 3.80731 3.89016 3.94630 4.01090 4.07124 4.12890 4.18709 4.27530 4.30824 4.32915 4.33168 4.46673 4.51993 4.56692 4.61351 4.65603 4.73629 4.78441 4.79564 4.84640 4.91174 4.93285 4.99100 5.04884 5.08086 5.12285 5.16221 5.27047 5.27520 5.33704 5.49917 5.54038 5.62811 5.64421 5.66279 5.77598 5.80912 5.88127 6.30314 6.34246 6.59183 7.22687 7.42754 8.13481 8.39022 9.36897 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.002550 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.177237 B =10978.565979 C =12721.718430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.058 0.942 6 C 0.122 3.878 7 N -0.707 5.707 8 C 0.520 3.480 9 O -0.584 6.584 10 C -0.105 4.105 11 H 0.131 0.869 12 C -0.116 4.116 13 C 0.048 3.952 14 N -0.473 5.473 15 C 0.083 3.917 16 C -0.185 4.185 17 C -0.105 4.105 18 C -0.149 4.149 19 C -0.102 4.102 20 C -0.145 4.145 21 C 0.058 3.942 22 N -0.726 5.726 23 C -0.211 4.211 24 H 0.078 0.922 25 C -0.069 4.069 26 N -0.964 5.964 27 Si 0.954 3.046 28 H -0.268 1.268 29 H -0.298 1.298 30 H -0.305 1.305 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.411 0.589 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.104 0.896 45 H 0.124 0.876 46 H 0.138 0.862 47 H 0.144 0.856 48 H 0.147 0.853 49 H 0.132 0.868 50 H 0.095 0.905 51 H 0.057 0.943 52 H 0.372 0.628 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.380 3.187 -6.438 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.198 4.198 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.357 5.357 8 C 0.307 3.693 9 O -0.466 6.466 10 C -0.127 4.127 11 H 0.149 0.851 12 C -0.155 4.155 13 C -0.077 4.077 14 N -0.188 5.188 15 C -0.015 4.015 16 C -0.206 4.206 17 C -0.123 4.123 18 C -0.168 4.168 19 C -0.120 4.120 20 C -0.165 4.165 21 C -0.069 4.069 22 N -0.365 5.365 23 C -0.343 4.343 24 H 0.096 0.904 25 C -0.262 4.262 26 N -0.616 5.616 27 Si 0.786 3.214 28 H -0.192 1.192 29 H -0.226 1.226 30 H -0.233 1.233 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.248 0.752 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.122 0.878 45 H 0.142 0.858 46 H 0.155 0.845 47 H 0.162 0.838 48 H 0.165 0.835 49 H 0.150 0.850 50 H 0.113 0.887 51 H 0.075 0.925 52 H 0.204 0.796 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.652 3.712 -6.578 18.285 hybrid contribution -1.289 -1.048 0.682 1.795 sum 15.363 2.664 -5.897 16.670 Atomic orbital electron populations 1.21730 0.95422 1.01759 1.00259 1.21632 0.96393 0.96298 0.98521 1.21848 1.00872 0.94962 1.02152 1.20676 0.90116 0.86128 0.96713 0.92439 1.21614 0.94535 0.95587 0.88519 1.45970 1.06789 1.52387 1.30547 1.20700 0.82206 0.80312 0.86132 1.90649 1.56197 1.50656 1.49051 1.22177 0.96324 0.96096 0.98111 0.85130 1.22370 0.98867 0.91879 1.02368 1.22937 0.89623 0.94433 1.00754 1.61958 1.00903 1.04845 1.51122 1.19309 0.91822 0.95061 0.95279 1.21546 0.96798 1.02554 0.99668 1.21307 0.95426 0.96352 0.99239 1.21435 1.01068 0.95683 0.98570 1.21368 0.93133 1.00274 0.97254 1.21023 0.98059 0.95642 1.01809 1.23134 0.93681 0.92779 0.97305 1.42558 1.17235 1.03300 1.73457 1.19473 0.93195 0.92009 1.29644 0.90373 1.25293 1.00985 0.96259 1.03615 1.69795 1.38138 0.99658 1.53977 0.85347 0.81313 0.77772 0.76991 1.19218 1.22564 1.23264 0.93421 0.93177 0.93169 0.93296 0.92192 0.92376 0.92161 0.90088 0.93570 0.75210 0.92267 0.88428 0.93378 0.87813 0.85838 0.84456 0.83802 0.83483 0.84961 0.88650 0.92509 0.79572 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.26 71.98 0.59 -3.92 16 2 C -0.11 -3.40 2.69 -10.79 -0.03 -3.43 16 3 C -0.14 -3.47 8.84 71.98 0.64 -2.84 16 4 C 0.17 5.93 2.18 44.99 0.10 6.03 16 5 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 6 C 0.12 3.90 4.73 86.38 0.41 4.31 16 7 N -0.71 -21.91 5.33 -463.06 -2.47 -24.38 16 8 C 0.52 16.10 7.03 87.66 0.62 16.71 16 9 O -0.58 -21.63 15.78 -3.05 -0.05 -21.68 16 10 C -0.11 -2.61 3.45 -10.33 -0.04 -2.65 16 11 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 12 C -0.12 -2.88 6.45 31.47 0.20 -2.67 16 13 C 0.05 1.08 6.12 86.45 0.53 1.61 16 14 N -0.47 -11.22 5.33 -682.79 -3.64 -14.86 16 15 C 0.08 1.96 5.35 38.21 0.20 2.17 16 16 C -0.19 -4.33 8.84 22.40 0.20 -4.13 16 17 C -0.10 -2.03 10.04 22.25 0.22 -1.81 16 18 C -0.15 -2.51 10.04 22.29 0.22 -2.28 16 19 C -0.10 -1.74 10.04 22.25 0.22 -1.52 16 20 C -0.15 -2.98 9.36 22.40 0.21 -2.77 16 21 C 0.06 1.46 4.36 86.65 0.38 1.84 16 22 N -0.73 -31.58 4.44 -322.94 -1.43 -33.02 16 23 C -0.21 -10.24 7.57 84.03 0.64 -9.61 16 24 H 0.08 3.68 7.40 -2.91 -0.02 3.66 16 25 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 26 N -0.96 -54.75 13.06 21.65 0.28 -54.47 16 27 Si 0.95 43.44 29.55 68.60 2.03 45.47 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 30 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 2.05 6.01 -2.39 -0.01 2.04 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.37 6.55 -2.39 -0.02 1.35 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 2.38 6.71 -2.39 -0.02 2.36 16 39 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.41 12.85 8.13 -92.70 -0.75 12.09 16 41 H 0.06 1.74 7.84 -2.39 -0.02 1.72 16 42 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 44 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.12 2.96 5.77 -2.91 -0.02 2.95 16 46 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 48 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 49 H 0.13 2.38 8.00 -2.91 -0.02 2.36 16 50 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 51 H 0.06 1.64 5.69 -2.39 -0.01 1.62 16 52 H 0.37 18.17 7.80 -92.71 -0.72 17.44 16 53 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 Total: -1.00 -61.18 415.28 -0.06 -61.24 By element: Atomic # 1 Polarization: 50.37 SS G_CDS: -0.57 Total: 49.80 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 5.78 Total: -8.10 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -7.26 Total: -126.73 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -61.18 -0.06 -61.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496570730.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.980 kcal (2) G-P(sol) polarization free energy of solvation -61.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds