Wall clock time and date at job start Wed Apr 1 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 5 5 H 1.09002 * 109.47398 * 59.99826 * 4 2 1 6 6 C 1.52997 * 109.47060 * 299.99657 * 4 2 1 7 7 N 1.46500 * 109.47520 * 185.00200 * 6 4 2 8 8 C 1.34772 * 120.00336 * 180.02562 * 7 6 4 9 9 O 1.21290 * 119.99809 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00153 * 180.02562 * 8 7 6 11 11 H 1.08995 * 110.28575 * 300.69766 * 10 8 7 12 12 C 1.54264 * 110.32555 * 62.82519 * 10 8 7 13 13 C 1.54380 * 105.06059 * 118.89375 * 12 10 8 14 14 N 1.48558 * 104.59322 * 23.85720 * 13 12 10 15 15 C 1.39673 * 111.00210 * 200.95651 * 14 13 12 16 16 C 1.38915 * 120.07689 * 119.84693 * 15 14 13 17 17 C 1.38102 * 119.92221 * 179.77267 * 16 15 14 18 18 C 1.38281 * 120.07733 * 0.50766 * 17 16 15 19 19 C 1.38286 * 120.15163 * 359.74859 * 18 17 16 20 20 C 1.38106 * 120.07069 * 359.97438 * 19 18 17 21 21 C 1.48721 * 104.28661 * 320.57002 * 14 13 12 22 22 N 1.46500 * 109.47023 * 179.97438 * 4 2 1 23 23 C 1.36931 * 119.99971 * 274.99678 * 22 4 2 24 24 H 1.08005 * 120.00425 * 359.97438 * 23 22 4 25 25 C 1.38812 * 120.00390 * 180.02562 * 23 22 4 26 26 N 1.31624 * 119.99556 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00553 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47196 * 60.00050 * 27 25 23 29 29 H 1.48500 * 109.47547 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46942 * 299.99859 * 27 25 23 31 31 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 32 32 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 34 34 H 1.09004 * 109.46733 * 239.99800 * 2 1 3 35 35 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 37 37 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 38 38 H 1.09004 * 109.47346 * 305.00346 * 6 4 2 39 39 H 1.09002 * 109.47196 * 65.00121 * 6 4 2 40 40 H 0.96995 * 119.99638 * 359.97438 * 7 6 4 41 41 H 1.08994 * 110.32642 * 237.79308 * 12 10 8 42 42 H 1.09005 * 110.32114 * 359.90347 * 12 10 8 43 43 H 1.08995 * 110.40642 * 142.63009 * 13 12 10 44 44 H 1.09000 * 110.41606 * 264.95820 * 13 12 10 45 45 H 1.07998 * 120.03405 * 0.02562 * 16 15 14 46 46 H 1.08003 * 119.96089 * 180.24971 * 17 16 15 47 47 H 1.08002 * 119.92304 * 179.72365 * 18 17 16 48 48 H 1.08001 * 119.96404 * 180.02562 * 19 18 17 49 49 H 1.08000 * 120.03261 * 180.02562 * 20 19 18 50 50 H 1.08997 * 110.38850 * 280.63734 * 21 14 13 51 51 H 1.09007 * 110.50828 * 158.15206 * 21 14 13 52 52 H 0.97004 * 120.00223 * 94.99655 * 22 4 2 53 53 H 0.96997 * 119.99679 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2492 6 6 1.5301 -0.0002 2.4985 7 7 2.1143 -0.6177 3.6916 8 6 1.8054 -0.1446 4.9152 9 8 1.0442 0.7928 5.0285 10 6 2.4068 -0.7796 6.1424 11 1 2.1375 -1.8345 6.1926 12 6 3.9410 -0.6182 6.1322 13 6 4.2664 0.2032 7.3982 14 7 3.1196 -0.0438 8.3096 15 6 3.0201 0.9625 9.2731 16 6 1.8703 1.7380 9.3537 17 6 1.7735 2.7290 10.3106 18 6 2.8235 2.9568 11.1811 19 6 3.9716 2.1903 11.1002 20 6 4.0728 1.1938 10.1494 21 6 1.9323 -0.0439 7.4140 22 7 3.5051 -0.7219 1.2488 23 6 4.1892 -1.6936 0.5686 24 1 3.6488 -2.4599 0.0326 25 6 5.5773 -1.6944 0.5686 26 7 6.2359 -0.7608 1.2222 27 14 6.5107 -3.0196 -0.3599 28 1 6.1521 -2.9610 -1.7998 29 1 7.9708 -2.7987 -0.2035 30 1 6.1511 -4.3530 0.1860 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8900 38 1 1.8185 1.0502 2.4548 39 1 0.4438 -0.0770 2.5444 40 1 2.7228 -1.3676 3.6009 41 1 4.4246 -1.5938 6.1792 42 1 4.2591 -0.0812 5.2386 43 1 5.1939 -0.1474 7.8507 44 1 4.3397 1.2632 7.1552 45 1 1.0516 1.5632 8.6714 46 1 0.8782 3.3296 10.3764 47 1 2.7468 3.7355 11.9255 48 1 4.7896 2.3705 11.7819 49 1 4.9696 0.5952 10.0871 50 1 1.6373 0.9776 7.1744 51 1 1.1045 -0.5809 7.8773 52 1 3.9905 -0.0338 1.7305 53 1 7.2059 -0.7617 1.2225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496570731.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:48 Heat of formation + Delta-G solvation = -13.599281 kcal Electronic energy + Delta-G solvation = -30723.872926 eV Core-core repulsion = 26787.581010 eV Total energy + Delta-G solvation = -3936.291916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.73222 -40.49559 -38.98643 -38.18032 -35.21751 -35.04223 -33.78082 -32.17131 -32.08596 -30.28929 -29.52008 -28.63844 -27.92622 -25.84502 -24.64120 -23.84704 -23.68943 -22.51665 -21.63996 -20.83967 -19.92971 -19.28793 -18.75228 -17.92076 -17.41257 -17.04510 -16.67652 -16.44728 -16.12416 -15.86010 -15.55430 -15.23469 -15.02804 -14.97238 -14.91429 -14.82637 -14.35804 -14.26046 -14.00209 -13.73553 -13.62697 -13.41895 -13.10561 -12.83127 -12.79760 -12.68810 -12.60103 -12.57042 -12.40217 -12.23509 -12.18317 -12.12255 -11.94668 -11.86550 -11.75816 -11.50216 -11.20564 -10.92497 -10.75634 -10.64982 -9.97415 -9.86345 -8.94820 -8.93336 -7.87793 -5.15247 0.42090 0.47967 1.51362 1.52308 1.57665 1.60765 2.19261 2.59812 2.71821 3.04399 3.35751 3.45607 3.55266 3.81349 3.90019 3.94196 4.01482 4.07728 4.12433 4.21722 4.23666 4.29472 4.35096 4.35707 4.45685 4.51207 4.53439 4.56776 4.62225 4.72203 4.74706 4.82204 4.84212 4.87130 4.91292 4.95031 5.03968 5.09702 5.12549 5.16861 5.24724 5.26931 5.31441 5.48735 5.49870 5.56691 5.62609 5.64294 5.68186 5.79073 5.87483 6.30242 6.32424 6.59464 7.22983 7.40879 8.12786 8.38196 9.34165 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.002641 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.808075 B =10599.898771 C =12229.116206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.171 3.829 5 H 0.056 0.944 6 C 0.120 3.880 7 N -0.708 5.708 8 C 0.517 3.483 9 O -0.584 6.584 10 C -0.107 4.107 11 H 0.130 0.870 12 C -0.112 4.112 13 C 0.044 3.956 14 N -0.466 5.466 15 C 0.080 3.920 16 C -0.183 4.183 17 C -0.105 4.105 18 C -0.149 4.149 19 C -0.102 4.102 20 C -0.146 4.146 21 C 0.048 3.952 22 N -0.723 5.723 23 C -0.230 4.230 24 H 0.074 0.926 25 C -0.065 4.065 26 N -0.962 5.962 27 Si 0.961 3.039 28 H -0.286 1.286 29 H -0.302 1.302 30 H -0.278 1.278 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.411 0.589 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.040 0.960 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.144 0.856 48 H 0.147 0.853 49 H 0.132 0.868 50 H 0.062 0.938 51 H 0.098 0.902 52 H 0.374 0.626 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 2.977 15.635 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.062 3.938 5 H 0.074 0.926 6 C -0.004 4.004 7 N -0.358 5.358 8 C 0.304 3.696 9 O -0.465 6.465 10 C -0.129 4.129 11 H 0.147 0.853 12 C -0.150 4.150 13 C -0.081 4.081 14 N -0.182 5.182 15 C -0.017 4.017 16 C -0.204 4.204 17 C -0.123 4.123 18 C -0.167 4.167 19 C -0.121 4.121 20 C -0.166 4.166 21 C -0.079 4.079 22 N -0.363 5.363 23 C -0.362 4.362 24 H 0.092 0.908 25 C -0.258 4.258 26 N -0.613 5.613 27 Si 0.791 3.209 28 H -0.213 1.213 29 H -0.229 1.229 30 H -0.204 1.204 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.247 0.753 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.058 0.942 45 H 0.143 0.857 46 H 0.156 0.844 47 H 0.162 0.838 48 H 0.165 0.835 49 H 0.150 0.850 50 H 0.080 0.920 51 H 0.116 0.884 52 H 0.206 0.794 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.443 2.913 15.828 18.659 hybrid contribution 1.196 0.005 -1.179 1.680 sum -8.247 2.918 14.648 17.062 Atomic orbital electron populations 1.21839 0.93857 1.02031 1.02085 1.21617 0.95948 0.96418 0.98935 1.21690 1.00250 0.96184 1.01006 1.20649 0.84039 0.97202 0.91870 0.92623 1.21675 0.97872 0.96852 0.84016 1.45978 1.48233 1.36302 1.05272 1.20784 0.80593 0.82915 0.85317 1.90637 1.38425 1.30203 1.87238 1.22019 0.96727 1.02652 0.91496 0.85256 1.22304 0.92847 1.02426 0.97427 1.23169 0.94635 0.98526 0.91810 1.62614 1.04389 1.39958 1.11205 1.19331 0.95653 0.90891 0.95846 1.21553 0.99382 0.97717 1.01726 1.21313 0.99658 0.96874 0.94500 1.21436 0.93660 1.01129 1.00500 1.21365 0.98594 0.94520 0.97603 1.21027 0.98621 1.00296 0.96672 1.23174 0.93384 1.00834 0.90535 1.42486 1.00377 1.32451 1.60973 1.19457 0.89095 1.04430 1.23239 0.90777 1.25331 0.97424 1.00645 1.02399 1.69789 1.06427 1.36691 1.48349 0.85411 0.77214 0.79695 0.78559 1.21274 1.22906 1.20428 0.92072 0.92190 0.92282 0.92849 0.94829 0.92505 0.92910 0.92869 0.90260 0.75275 0.88170 0.91717 0.87740 0.94167 0.85742 0.84389 0.83774 0.83509 0.85050 0.91959 0.88355 0.79420 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.84 71.98 0.64 -2.84 16 2 C -0.11 -3.45 2.91 -10.79 -0.03 -3.48 16 3 C -0.13 -4.41 8.69 71.98 0.63 -3.78 16 4 C 0.17 5.98 2.27 44.99 0.10 6.08 16 5 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 6 C 0.12 3.86 4.51 86.38 0.39 4.25 16 7 N -0.71 -22.12 5.31 -463.06 -2.46 -24.58 16 8 C 0.52 16.04 6.94 87.66 0.61 16.65 16 9 O -0.58 -21.58 15.44 -3.06 -0.05 -21.62 16 10 C -0.11 -2.66 3.44 -10.64 -0.04 -2.69 16 11 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 12 C -0.11 -2.78 6.60 31.49 0.21 -2.57 16 13 C 0.04 1.05 5.92 86.45 0.51 1.56 16 14 N -0.47 -11.30 5.43 -680.93 -3.70 -15.00 16 15 C 0.08 1.94 5.48 38.22 0.21 2.15 16 16 C -0.18 -4.32 8.82 22.40 0.20 -4.12 16 17 C -0.10 -2.05 10.04 22.25 0.22 -1.83 16 18 C -0.15 -2.54 10.04 22.29 0.22 -2.32 16 19 C -0.10 -1.79 10.04 22.25 0.22 -1.57 16 20 C -0.15 -3.08 9.37 22.40 0.21 -2.87 16 21 C 0.05 1.19 4.61 86.42 0.40 1.59 16 22 N -0.72 -31.96 3.80 -322.94 -1.23 -33.19 16 23 C -0.23 -11.50 9.93 84.03 0.83 -10.66 16 24 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 25 C -0.07 -3.46 5.50 84.86 0.47 -2.99 16 26 N -0.96 -54.85 13.06 21.65 0.28 -54.56 16 27 Si 0.96 43.74 29.55 68.60 2.03 45.77 16 28 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 30 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.03 1.32 7.61 -2.39 -0.02 1.30 16 36 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.05 1.64 6.32 -2.39 -0.02 1.63 16 38 H 0.05 1.88 6.17 -2.39 -0.01 1.87 16 39 H 0.08 2.35 6.71 -2.39 -0.02 2.33 16 40 H 0.41 13.00 8.14 -92.71 -0.75 12.25 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 1.92 7.68 -2.38 -0.02 1.90 16 43 H 0.10 2.15 8.03 -2.39 -0.02 2.13 16 44 H 0.04 1.07 7.98 -2.39 -0.02 1.05 16 45 H 0.12 2.98 5.79 -2.91 -0.02 2.96 16 46 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 47 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 48 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 49 H 0.13 2.45 7.90 -2.91 -0.02 2.43 16 50 H 0.06 1.82 5.06 -2.39 -0.01 1.80 16 51 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 52 H 0.37 18.34 7.80 -92.71 -0.72 17.62 16 53 H 0.25 14.02 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -61.92 414.98 0.32 -61.61 By element: Atomic # 1 Polarization: 51.58 SS G_CDS: -0.56 Total: 51.02 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 6.00 Total: -9.44 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -7.10 Total: -127.32 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -61.92 0.32 -61.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496570731.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.007 kcal (2) G-P(sol) polarization free energy of solvation -61.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds