Wall clock time and date at job start Wed Apr 1 2020 03:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 6 6 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 7 7 N 1.46499 * 109.47439 * 184.99795 * 6 4 2 8 8 C 1.34777 * 120.00574 * 179.97438 * 7 6 4 9 9 O 1.21287 * 119.99689 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00383 * 179.97438 * 8 7 6 11 11 H 1.09000 * 110.64487 * 61.70236 * 10 8 7 12 12 C 1.54591 * 110.72683 * 298.54660 * 10 8 7 13 13 C 1.53991 * 105.14421 * 219.68261 * 12 10 8 14 14 N 1.47908 * 107.05389 * 358.77674 * 13 12 10 15 15 C 1.39679 * 110.99687 * 145.84406 * 14 13 12 16 16 C 1.38915 * 120.06963 * 239.59444 * 15 14 13 17 17 C 1.38106 * 119.91922 * 179.77167 * 16 15 14 18 18 C 1.38286 * 120.07440 * 0.50722 * 17 16 15 19 19 C 1.38281 * 120.14976 * 359.74630 * 18 17 16 20 20 C 1.38095 * 120.07895 * 359.97438 * 19 18 17 21 21 C 1.48531 * 105.82187 * 25.33129 * 14 13 12 22 22 N 1.46507 * 109.47485 * 179.97438 * 4 2 1 23 23 C 1.36937 * 120.00114 * 275.00287 * 22 4 2 24 24 H 1.08003 * 119.99797 * 0.02562 * 23 22 4 25 25 C 1.38811 * 119.99786 * 180.02562 * 23 22 4 26 26 N 1.31616 * 119.99963 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99856 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47018 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47570 * 119.99593 * 27 25 23 30 30 H 1.48500 * 109.47045 * 239.99798 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 38 38 H 1.08998 * 109.47249 * 304.99379 * 6 4 2 39 39 H 1.08996 * 109.47548 * 64.99518 * 6 4 2 40 40 H 0.97001 * 120.00036 * 359.97438 * 7 6 4 41 41 H 1.09002 * 110.30663 * 338.60277 * 12 10 8 42 42 H 1.09005 * 110.30764 * 100.76537 * 12 10 8 43 43 H 1.08996 * 109.91805 * 118.12459 * 13 12 10 44 44 H 1.08995 * 109.92202 * 239.42379 * 13 12 10 45 45 H 1.08001 * 120.03879 * 0.02562 * 16 15 14 46 46 H 1.08000 * 119.95867 * 180.25418 * 17 16 15 47 47 H 1.08000 * 119.92166 * 179.76578 * 18 17 16 48 48 H 1.08011 * 119.95736 * 179.97438 * 19 18 17 49 49 H 1.08001 * 120.04179 * 180.02562 * 20 19 18 50 50 H 1.09002 * 110.66557 * 202.35890 * 21 14 13 51 51 H 1.08995 * 110.67115 * 79.22669 * 21 14 13 52 52 H 0.96996 * 119.99301 * 95.00234 * 22 4 2 53 53 H 0.97001 * 119.99604 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6768 -0.2075 -2.1391 6 6 1.5300 -2.1637 -1.2491 7 7 2.1142 -2.8883 -2.3805 8 6 1.8061 -4.1848 -2.5819 9 8 1.0449 -4.7516 -1.8268 10 6 2.4066 -4.9299 -3.7460 11 1 3.4926 -4.9658 -3.6604 12 6 1.9845 -4.2839 -5.0856 13 6 1.7178 -5.4659 -6.0359 14 7 2.0052 -6.7040 -5.2795 15 6 1.1464 -7.7362 -5.6642 16 6 0.3129 -8.3338 -4.7272 17 6 -0.5384 -9.3510 -5.1119 18 6 -0.5541 -9.7818 -6.4259 19 6 0.2781 -9.1926 -7.3599 20 6 1.1277 -8.1711 -6.9833 21 6 1.8134 -6.3577 -3.8479 22 7 3.5051 -0.7207 -1.2494 23 6 4.1893 0.3542 -1.7509 24 1 3.6489 1.2018 -2.1458 25 6 5.5774 0.3544 -1.7517 26 7 6.2359 -0.6783 -1.2699 27 14 6.5108 1.8211 -2.4351 28 1 5.5453 2.8439 -2.9116 29 1 7.3650 2.4045 -1.3697 30 1 7.3640 1.3807 -3.5679 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8900 38 1 1.8184 -2.6511 -0.3178 39 1 0.4438 -2.1651 -1.3387 40 1 2.7228 -2.4349 -2.9846 41 1 1.0778 -3.6939 -4.9518 42 1 2.7890 -3.6597 -5.4746 43 1 0.6753 -5.4587 -6.3540 44 1 2.3740 -5.4001 -6.9036 45 1 0.3277 -8.0006 -3.7000 46 1 -1.1896 -9.8132 -4.3849 47 1 -1.2181 -10.5800 -6.7232 48 1 0.2636 -9.5318 -8.3853 49 1 1.7771 -7.7111 -7.7134 50 1 2.3622 -7.0488 -3.2081 51 1 0.7540 -6.3533 -3.5917 52 1 3.9903 -1.4819 -0.8944 53 1 7.2059 -0.6780 -1.2701 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496570732.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:53 Heat of formation + Delta-G solvation = -15.552808 kcal Electronic energy + Delta-G solvation = -30420.052348 eV Core-core repulsion = 26483.675721 eV Total energy + Delta-G solvation = -3936.376627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.71038 -40.49844 -38.91603 -38.22249 -35.30535 -34.91323 -33.80821 -32.14745 -32.08705 -30.38360 -29.66928 -29.02799 -27.46339 -25.82101 -24.65407 -23.67249 -23.31969 -22.33642 -21.57162 -21.11962 -20.51405 -19.25130 -18.75844 -17.87155 -17.12110 -17.07475 -16.81469 -16.41464 -16.14846 -15.86866 -15.53093 -15.41784 -15.05830 -14.95001 -14.84201 -14.71247 -14.23630 -14.13378 -14.03917 -13.71062 -13.62038 -13.41689 -13.02094 -12.91048 -12.87543 -12.77298 -12.68262 -12.43828 -12.43285 -12.25895 -12.22882 -11.96372 -11.95895 -11.77578 -11.70223 -11.44012 -11.28156 -10.92718 -10.74723 -10.59540 -10.00174 -9.86041 -8.94665 -8.90480 -7.86485 -5.13303 0.43157 0.48399 1.49573 1.52557 1.59620 1.60333 2.17304 2.60467 2.72692 3.01785 3.35352 3.46901 3.50197 3.81603 3.87815 3.94469 4.01589 4.07630 4.13755 4.18997 4.29447 4.30888 4.32939 4.34281 4.46733 4.51505 4.57410 4.62802 4.65600 4.71564 4.78317 4.80054 4.85443 4.90711 4.93024 4.98658 5.06107 5.07996 5.12850 5.16043 5.26858 5.28176 5.33559 5.50796 5.53775 5.62327 5.65196 5.65997 5.77611 5.83173 5.88521 6.31294 6.33717 6.58909 7.22375 7.41918 8.13070 8.38173 9.36467 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002354 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.499318 B =11891.426741 C =13264.957219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.173 3.827 5 H 0.058 0.942 6 C 0.122 3.878 7 N -0.706 5.706 8 C 0.521 3.479 9 O -0.585 6.585 10 C -0.111 4.111 11 H 0.116 0.884 12 C -0.115 4.115 13 C 0.046 3.954 14 N -0.478 5.478 15 C 0.084 3.916 16 C -0.187 4.187 17 C -0.104 4.104 18 C -0.149 4.149 19 C -0.101 4.101 20 C -0.145 4.145 21 C 0.059 3.941 22 N -0.727 5.727 23 C -0.210 4.210 24 H 0.080 0.920 25 C -0.072 4.072 26 N -0.967 5.967 27 Si 0.956 3.044 28 H -0.266 1.266 29 H -0.304 1.304 30 H -0.298 1.298 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.412 0.588 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.148 0.852 49 H 0.134 0.866 50 H 0.084 0.916 51 H 0.063 0.937 52 H 0.372 0.628 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -11.956 -11.210 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.357 5.357 8 C 0.307 3.693 9 O -0.466 6.466 10 C -0.133 4.133 11 H 0.134 0.866 12 C -0.154 4.154 13 C -0.078 4.078 14 N -0.194 5.194 15 C -0.013 4.013 16 C -0.207 4.207 17 C -0.123 4.123 18 C -0.168 4.168 19 C -0.119 4.119 20 C -0.165 4.165 21 C -0.068 4.068 22 N -0.366 5.366 23 C -0.342 4.342 24 H 0.098 0.902 25 C -0.264 4.264 26 N -0.618 5.618 27 Si 0.788 3.212 28 H -0.190 1.190 29 H -0.232 1.232 30 H -0.226 1.226 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.248 0.752 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.122 0.878 45 H 0.139 0.861 46 H 0.154 0.846 47 H 0.162 0.838 48 H 0.166 0.834 49 H 0.152 0.848 50 H 0.103 0.897 51 H 0.081 0.919 52 H 0.204 0.796 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.732 -12.261 -10.874 22.036 hybrid contribution 0.913 0.946 0.336 1.357 sum -13.819 -11.315 -10.538 20.737 Atomic orbital electron populations 1.21848 0.93994 1.01813 1.02162 1.21633 0.95879 0.96826 0.98534 1.21731 1.01676 0.95493 1.00281 1.20677 0.83952 0.92227 0.96738 0.92377 1.21614 0.97945 0.92133 0.88567 1.45967 1.48239 1.10953 1.30502 1.20673 0.80635 0.81950 0.86012 1.90648 1.38396 1.68525 1.49018 1.22164 1.02548 0.95020 0.93533 0.86619 1.22430 1.03231 0.97724 0.91982 1.22978 1.01174 0.86322 0.97372 1.61923 1.46888 1.06111 1.04469 1.19304 0.91697 0.95573 0.94717 1.21537 0.98180 1.00778 1.00232 1.21296 0.97886 0.95881 0.97225 1.21426 1.00804 1.01503 0.93060 1.21364 0.94816 0.95000 1.00729 1.21009 1.01457 0.99628 0.94368 1.23093 1.00502 0.94537 0.88668 1.42581 1.00489 1.20132 1.73439 1.19487 0.88709 0.96464 1.29568 0.90241 1.25338 0.97626 0.99797 1.03683 1.69806 1.06291 1.31675 1.54054 0.85315 0.78873 0.80093 0.76964 1.19039 1.23243 1.22610 0.92402 0.92150 0.92181 0.93286 0.93152 0.93200 0.93386 0.93501 0.90136 0.75203 0.90578 0.88096 0.92526 0.87824 0.86069 0.84583 0.83846 0.83427 0.84831 0.89726 0.91906 0.79605 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.84 71.98 0.64 -2.82 16 2 C -0.11 -3.40 2.69 -10.79 -0.03 -3.43 16 3 C -0.13 -4.51 8.26 71.98 0.59 -3.92 16 4 C 0.17 5.94 2.18 44.99 0.10 6.04 16 5 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 6 C 0.12 3.90 4.73 86.38 0.41 4.31 16 7 N -0.71 -21.93 5.33 -463.08 -2.47 -24.40 16 8 C 0.52 16.20 7.03 87.66 0.62 16.82 16 9 O -0.58 -21.75 15.78 -3.05 -0.05 -21.79 16 10 C -0.11 -2.78 3.45 -10.34 -0.04 -2.82 16 11 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 12 C -0.12 -2.31 6.45 31.47 0.20 -2.11 16 13 C 0.05 0.88 6.12 86.44 0.53 1.41 16 14 N -0.48 -10.92 5.33 -682.77 -3.64 -14.56 16 15 C 0.08 1.90 5.35 38.21 0.20 2.10 16 16 C -0.19 -4.19 8.84 22.40 0.20 -3.99 16 17 C -0.10 -1.92 10.04 22.25 0.22 -1.69 16 18 C -0.15 -2.32 10.04 22.29 0.22 -2.10 16 19 C -0.10 -1.56 10.04 22.25 0.22 -1.34 16 20 C -0.14 -2.71 9.36 22.40 0.21 -2.50 16 21 C 0.06 1.50 4.36 86.65 0.38 1.87 16 22 N -0.73 -31.84 4.44 -322.94 -1.43 -33.28 16 23 C -0.21 -10.24 7.57 84.03 0.64 -9.61 16 24 H 0.08 3.74 7.39 -2.91 -0.02 3.72 16 25 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 26 N -0.97 -55.68 13.06 21.65 0.28 -55.40 16 27 Si 0.96 43.67 29.55 68.60 2.03 45.70 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 30 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 31 H 0.06 1.36 6.55 -2.39 -0.02 1.34 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 2.04 6.01 -2.39 -0.01 2.03 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 2.36 6.71 -2.39 -0.02 2.34 16 40 H 0.41 12.86 8.13 -92.71 -0.75 12.10 16 41 H 0.08 1.53 7.84 -2.39 -0.02 1.52 16 42 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.06 1.06 7.75 -2.39 -0.02 1.04 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.12 2.86 5.76 -2.91 -0.02 2.84 16 46 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 48 H 0.15 1.46 8.06 -2.90 -0.02 1.43 16 49 H 0.13 2.15 8.00 -2.91 -0.02 2.12 16 50 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.06 1.73 5.69 -2.39 -0.01 1.72 16 52 H 0.37 18.34 7.80 -92.71 -0.72 17.62 16 53 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -62.33 415.27 -0.06 -62.39 By element: Atomic # 1 Polarization: 49.03 SS G_CDS: -0.57 Total: 48.46 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.78 Total: -7.13 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -7.26 Total: -127.63 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.33 -0.06 -62.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496570732.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.842 kcal (2) G-P(sol) polarization free energy of solvation -62.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds