Wall clock time and date at job start Wed Apr 1 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47550 * 2 1 4 4 C 1.53005 * 109.47295 * 239.99373 * 2 1 3 5 5 H 1.09000 * 109.46765 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47079 * 300.00550 * 4 2 1 7 7 N 1.46500 * 109.47092 * 174.99902 * 6 4 2 8 8 C 1.34768 * 120.00392 * 179.97438 * 7 6 4 9 9 O 1.21289 * 119.99933 * 355.02047 * 8 7 6 10 10 C 1.50697 * 120.00572 * 175.01858 * 8 7 6 11 11 H 1.09008 * 109.43593 * 335.34067 * 10 8 7 12 12 C 1.53046 * 109.44366 * 215.41570 * 10 8 7 13 13 C 1.53386 * 107.91771 * 192.66640 * 12 10 8 14 14 N 1.46428 * 108.64839 * 68.28700 * 13 12 10 15 15 C 1.46903 * 111.00081 * 181.11816 * 14 13 12 16 16 C 1.39409 * 113.12824 * 306.66198 * 14 13 12 17 17 C 1.39617 * 117.65155 * 199.88325 * 16 14 13 18 18 C 1.37809 * 120.42440 * 180.27477 * 17 16 14 19 19 C 1.38321 * 119.94929 * 0.02562 * 18 17 16 20 20 C 1.38047 * 119.88948 * 359.87962 * 19 18 17 21 21 C 1.38375 * 122.96378 * 19.97577 * 16 14 13 22 22 N 1.46499 * 109.46879 * 60.00467 * 4 2 1 23 23 C 1.36939 * 120.00117 * 84.99803 * 22 4 2 24 24 H 1.08002 * 119.99627 * 0.02562 * 23 22 4 25 25 C 1.38811 * 119.99940 * 179.97438 * 23 22 4 26 26 N 1.31621 * 119.99970 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99878 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46835 * 60.00174 * 27 25 23 29 29 H 1.48497 * 109.47144 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47304 * 300.00525 * 27 25 23 31 31 H 1.09004 * 109.46807 * 60.00527 * 1 2 3 32 32 H 1.09000 * 109.47337 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47187 * 300.00642 * 1 2 3 34 34 H 1.09004 * 109.46804 * 120.00030 * 2 1 3 35 35 H 1.08997 * 109.47180 * 59.99014 * 3 2 1 36 36 H 1.08999 * 109.47223 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.46635 * 299.99578 * 3 2 1 38 38 H 1.09001 * 109.46885 * 294.99889 * 6 4 2 39 39 H 1.09000 * 109.47306 * 54.99927 * 6 4 2 40 40 H 0.97006 * 119.99764 * 359.97438 * 7 6 4 41 41 H 1.08995 * 109.77020 * 312.26812 * 12 10 8 42 42 H 1.09002 * 109.77051 * 73.00920 * 12 10 8 43 43 H 1.08999 * 109.60769 * 188.03543 * 13 12 10 44 44 H 1.09006 * 109.60398 * 308.36512 * 13 12 10 45 45 H 1.08998 * 109.46856 * 67.84985 * 15 14 13 46 46 H 1.08999 * 109.46871 * 187.84809 * 15 14 13 47 47 H 1.08999 * 109.46634 * 307.85026 * 15 14 13 48 48 H 1.07994 * 119.78842 * 0.30662 * 17 16 14 49 49 H 1.07998 * 120.02757 * 180.02562 * 18 17 16 50 50 H 1.07995 * 120.05159 * 179.85869 * 19 18 17 51 51 H 1.07996 * 119.76062 * 180.02562 * 20 19 18 52 52 H 0.96997 * 119.99696 * 265.00233 * 22 4 2 53 53 H 0.96999 * 119.99891 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 1 3.1301 -0.7218 -1.2489 6 6 1.5300 -2.1639 -1.2491 7 7 1.9176 -2.8190 -2.5008 8 6 1.5745 -4.1030 -2.7238 9 8 1.0244 -4.7437 -1.8531 10 6 1.8741 -4.7429 -4.0549 11 1 1.9461 -3.9705 -4.8207 12 6 0.7496 -5.7159 -4.4170 13 6 1.2289 -6.5738 -5.5948 14 7 2.3055 -7.4499 -5.1283 15 6 2.8225 -8.2786 -6.2255 16 6 3.3375 -6.7594 -4.4946 17 6 4.5758 -7.3962 -4.3921 18 6 5.6342 -6.7684 -3.7718 19 6 5.4722 -5.4994 -3.2456 20 6 4.2508 -4.8640 -3.3456 21 6 3.1823 -5.4883 -3.9704 22 7 1.5518 -0.0308 -2.4454 23 6 2.2395 1.0429 -2.9448 24 1 3.1421 1.3803 -2.4570 25 6 1.7772 1.6969 -4.0785 26 7 0.6775 1.2852 -4.6733 27 14 2.7149 3.1620 -4.7594 28 1 4.0919 2.7424 -5.1237 29 1 2.0188 3.6783 -5.9652 30 1 2.7792 4.2304 -3.7300 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1301 1.4424 0.0005 37 1 1.6768 1.9562 -0.8901 38 1 1.9646 -2.7028 -0.4072 39 1 0.4437 -2.1651 -1.1596 40 1 2.4212 -2.3285 -3.1692 41 1 0.5255 -6.3547 -3.5628 42 1 -0.1419 -5.1586 -4.7046 43 1 0.4017 -7.1776 -5.9680 44 1 1.5986 -5.9278 -6.3911 45 1 3.3365 -7.6449 -6.9483 46 1 3.5204 -9.0149 -5.8269 47 1 1.9944 -8.7907 -6.7153 48 1 4.7052 -8.3869 -4.8021 49 1 6.5894 -7.2667 -3.6964 50 1 6.2998 -5.0068 -2.7571 51 1 4.1267 -3.8731 -2.9345 52 1 0.7414 -0.3342 -2.8836 53 1 0.3542 1.7425 -5.4653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496571480.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:07 Heat of formation + Delta-G solvation = -16.130519 kcal Electronic energy + Delta-G solvation = -31487.926339 eV Core-core repulsion = 27551.524661 eV Total energy + Delta-G solvation = -3936.401679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.99234 -40.39149 -38.83240 -37.78393 -35.37073 -35.24450 -34.71139 -31.96738 -31.35577 -30.80760 -29.85072 -28.23452 -27.69581 -25.82233 -25.29540 -24.28999 -23.75436 -22.65724 -21.54581 -20.53441 -20.12756 -19.22936 -18.45658 -17.86803 -17.34498 -16.89278 -16.81052 -16.68998 -16.08436 -15.70770 -15.50670 -15.39712 -15.13465 -15.04860 -14.73685 -14.68564 -14.54220 -14.11971 -14.00363 -13.77054 -13.49768 -13.36591 -13.15027 -12.89348 -12.83108 -12.79997 -12.68013 -12.63692 -12.46301 -12.21557 -12.14520 -12.00737 -11.95618 -11.89131 -11.55412 -11.38311 -11.18952 -10.96599 -10.82068 -10.75042 -9.99428 -9.70974 -8.91805 -8.64127 -7.84442 -5.10142 0.37860 0.46227 1.51365 1.52537 1.57233 1.60213 2.24573 2.61706 2.64797 2.94197 3.47979 3.51119 3.66457 3.79358 3.88880 3.92956 3.95610 4.07952 4.19483 4.25468 4.28024 4.34939 4.38865 4.42252 4.44817 4.46602 4.57852 4.60469 4.68630 4.72922 4.75721 4.77888 4.87366 4.95395 4.95649 4.98672 5.09798 5.11926 5.13752 5.22554 5.24450 5.29910 5.32607 5.48802 5.54874 5.59530 5.63736 5.65396 5.82404 5.82802 6.07188 6.31017 6.35526 6.57290 7.22360 7.44414 8.15864 8.41771 9.38042 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011413 B = 0.003077 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.658372 B = 9096.858942 C = 9695.883131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.136 4.136 4 C 0.171 3.829 5 H 0.055 0.945 6 C 0.119 3.881 7 N -0.709 5.709 8 C 0.524 3.476 9 O -0.580 6.580 10 C -0.061 4.061 11 H 0.102 0.898 12 C -0.106 4.106 13 C 0.062 3.938 14 N -0.508 5.508 15 C 0.022 3.978 16 C 0.123 3.877 17 C -0.168 4.168 18 C -0.091 4.091 19 C -0.157 4.157 20 C -0.107 4.107 21 C -0.133 4.133 22 N -0.720 5.720 23 C -0.213 4.213 24 H 0.077 0.923 25 C -0.068 4.068 26 N -0.965 5.965 27 Si 0.954 3.046 28 H -0.281 1.281 29 H -0.305 1.305 30 H -0.285 1.285 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.409 0.591 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.054 0.946 45 H 0.041 0.959 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.150 0.850 49 H 0.152 0.848 50 H 0.137 0.863 51 H 0.114 0.886 52 H 0.374 0.626 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -17.711 -0.339 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.062 3.938 5 H 0.073 0.927 6 C -0.005 4.005 7 N -0.359 5.359 8 C 0.311 3.689 9 O -0.461 6.461 10 C -0.082 4.082 11 H 0.120 0.880 12 C -0.144 4.144 13 C -0.063 4.063 14 N -0.221 5.221 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.189 4.189 18 C -0.109 4.109 19 C -0.176 4.176 20 C -0.126 4.126 21 C -0.137 4.137 22 N -0.360 5.360 23 C -0.345 4.345 24 H 0.095 0.905 25 C -0.260 4.260 26 N -0.616 5.616 27 Si 0.785 3.215 28 H -0.207 1.207 29 H -0.231 1.231 30 H -0.211 1.211 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.245 0.755 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.130 0.870 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.168 0.832 49 H 0.170 0.830 50 H 0.155 0.845 51 H 0.132 0.868 52 H 0.206 0.794 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.572 -18.352 0.520 19.500 hybrid contribution 0.280 1.992 -1.240 2.363 sum 6.852 -16.360 -0.719 17.752 Atomic orbital electron populations 1.21711 0.95829 1.00818 1.00855 1.21584 0.95966 0.96946 0.98137 1.21747 0.99906 0.96426 1.01222 1.20648 0.96983 0.88547 0.87577 0.92711 1.21649 0.99803 0.92917 0.86150 1.46095 1.56614 1.11934 1.21264 1.20646 0.77338 0.81499 0.89380 1.90629 1.44824 1.63490 1.47114 1.20223 0.94876 0.98410 0.94728 0.88010 1.21597 0.96606 0.96960 0.99238 1.22211 0.94056 0.94521 0.95561 1.58138 1.10075 1.24301 1.29633 1.22661 1.01748 0.97056 0.90826 1.18783 0.91015 0.90427 0.97366 1.21419 0.91386 1.01600 1.04483 1.21308 0.99478 0.94492 0.95620 1.21235 0.97236 0.96554 1.02583 1.21185 0.93433 0.99849 0.98106 1.19145 0.94510 0.94336 1.05673 1.42463 1.29741 1.34648 1.29126 1.19409 1.04684 1.04927 1.05462 0.90511 1.25262 0.98853 1.02230 0.99664 1.69786 1.24914 1.44151 1.22781 0.85501 0.78036 0.80734 0.77210 1.20731 1.23147 1.21122 0.94513 0.93015 0.92550 0.90512 0.93119 0.93577 0.92963 0.91005 0.92435 0.75452 0.91267 0.89477 0.87041 0.92798 0.94028 0.89242 0.88837 0.83208 0.83027 0.84493 0.86778 0.79412 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.69 71.98 0.63 -3.80 16 2 C -0.10 -3.37 2.80 -10.79 -0.03 -3.40 16 3 C -0.14 -4.61 8.26 71.98 0.59 -4.01 16 4 C 0.17 6.03 2.35 44.99 0.11 6.14 16 5 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 6 C 0.12 3.99 5.02 86.38 0.43 4.42 16 7 N -0.71 -23.67 4.66 -463.06 -2.16 -25.83 16 8 C 0.52 18.02 5.85 87.66 0.51 18.53 16 9 O -0.58 -23.58 16.05 -3.06 -0.05 -23.62 16 10 C -0.06 -1.77 2.65 -12.24 -0.03 -1.81 16 11 H 0.10 2.85 8.13 -2.38 -0.02 2.83 16 12 C -0.11 -2.75 5.36 30.74 0.16 -2.58 16 13 C 0.06 1.25 5.47 86.52 0.47 1.72 16 14 N -0.51 -10.74 4.78 -720.62 -3.44 -14.18 16 15 C 0.02 0.30 8.88 127.69 1.13 1.43 16 16 C 0.12 3.05 5.82 38.30 0.22 3.28 16 17 C -0.17 -3.43 9.02 22.50 0.20 -3.23 16 18 C -0.09 -1.76 10.04 22.19 0.22 -1.53 16 19 C -0.16 -3.59 10.05 22.24 0.22 -3.36 16 20 C -0.11 -2.95 9.07 22.32 0.20 -2.74 16 21 C -0.13 -3.74 5.40 -19.71 -0.11 -3.84 16 22 N -0.72 -31.51 3.67 -322.93 -1.19 -32.69 16 23 C -0.21 -10.44 7.57 84.03 0.64 -9.80 16 24 H 0.08 3.65 7.40 -2.91 -0.02 3.63 16 25 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 26 N -0.96 -55.31 13.06 21.65 0.28 -55.03 16 27 Si 0.95 43.92 29.55 68.60 2.03 45.95 16 28 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 29 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 30 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 31 H 0.04 1.44 7.60 -2.38 -0.02 1.42 16 32 H 0.05 1.61 6.32 -2.39 -0.02 1.59 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 2.16 6.01 -2.38 -0.01 2.15 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.06 2.07 6.17 -2.39 -0.01 2.05 16 40 H 0.41 13.87 7.99 -92.70 -0.74 13.13 16 41 H 0.07 2.12 7.44 -2.39 -0.02 2.10 16 42 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.04 8.11 -2.38 -0.02 1.02 16 45 H 0.04 0.56 8.14 -2.39 -0.02 0.55 16 46 H 0.09 1.00 6.14 -2.39 -0.01 0.98 16 47 H 0.09 0.94 8.10 -2.39 -0.02 0.92 16 48 H 0.15 2.22 5.92 -2.91 -0.02 2.20 16 49 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 50 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 51 H 0.11 3.24 6.69 -2.91 -0.02 3.22 16 52 H 0.37 18.30 7.80 -92.71 -0.72 17.57 16 53 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -64.14 408.36 0.98 -63.17 By element: Atomic # 1 Polarization: 50.50 SS G_CDS: -0.55 Total: 49.95 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 6.05 Total: -7.72 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -6.51 Total: -127.73 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.14 0.98 -63.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496571480.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.036 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds