Wall clock time and date at job start Wed Apr 1 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47310 * 2 1 4 4 C 1.53000 * 109.47724 * 120.00238 * 2 1 3 5 5 H 1.09002 * 109.47011 * 295.51623 * 4 2 1 6 6 C 1.50691 * 109.47667 * 175.51342 * 4 2 1 7 7 O 1.21285 * 120.00065 * 332.80595 * 6 4 2 8 8 N 1.34772 * 120.00219 * 152.79776 * 6 4 2 9 9 C 1.47485 * 127.03188 * 354.51539 * 8 6 4 10 10 C 1.54005 * 107.08489 * 154.51578 * 9 8 6 11 11 C 1.54621 * 105.04672 * 1.30257 * 10 9 8 12 12 C 1.53003 * 110.73735 * 263.33548 * 11 10 9 13 13 C 1.52992 * 110.74132 * 140.19021 * 11 10 9 14 14 N 1.46490 * 109.47428 * 61.45234 * 13 11 10 15 15 C 1.36937 * 120.00379 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99521 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00415 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99674 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00149 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47167 * 90.00262 * 19 17 15 21 21 H 1.48501 * 109.47453 * 210.00128 * 19 17 15 22 22 H 1.48499 * 109.47352 * 330.00299 * 19 17 15 23 23 C 1.48118 * 127.03528 * 174.19378 * 8 6 4 24 24 C 1.50704 * 109.46928 * 55.51153 * 4 2 1 25 25 C 1.38666 * 120.41944 * 240.02950 * 24 4 2 26 26 C 1.38633 * 118.41988 * 179.97438 * 25 24 4 27 27 C 1.38221 * 119.16357 * 359.97438 * 26 25 24 28 28 N 1.31861 * 120.76095 * 359.72683 * 27 26 25 29 29 C 1.31880 * 121.72443 * 0.56301 * 28 27 26 30 30 H 1.09009 * 109.46886 * 299.99920 * 1 2 3 31 31 H 1.09004 * 109.47417 * 59.99713 * 1 2 3 32 32 H 1.09002 * 109.47449 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46886 * 240.00080 * 2 1 3 34 34 H 1.09002 * 109.47223 * 185.17966 * 3 2 1 35 35 H 1.09000 * 109.46762 * 305.17875 * 3 2 1 36 36 H 1.08998 * 109.47009 * 65.17785 * 3 2 1 37 37 H 1.09009 * 109.91353 * 273.87055 * 9 8 6 38 38 H 1.08998 * 109.91371 * 34.96021 * 9 8 6 39 39 H 1.08993 * 110.33072 * 120.19457 * 10 9 8 40 40 H 1.09003 * 110.32256 * 242.31051 * 10 9 8 41 41 H 1.09002 * 109.47299 * 58.54683 * 12 11 10 42 42 H 1.08999 * 109.46828 * 178.54279 * 12 11 10 43 43 H 1.08993 * 109.47185 * 298.54192 * 12 11 10 44 44 H 1.08998 * 109.47366 * 181.46040 * 13 11 10 45 45 H 1.09003 * 109.46850 * 301.45233 * 13 11 10 46 46 H 0.97007 * 120.00124 * 0.02562 * 14 13 11 47 47 H 0.97000 * 119.99458 * 179.97438 * 18 17 15 48 48 H 1.09003 * 110.66201 * 337.77328 * 23 8 6 49 49 H 1.08998 * 110.66444 * 100.89178 * 23 8 6 50 50 H 1.07999 * 120.79007 * 359.97438 * 25 24 4 51 51 H 1.08003 * 120.41538 * 180.02562 * 26 25 24 52 52 H 1.07994 * 119.62252 * 179.97438 * 27 26 25 53 53 H 1.08006 * 119.62056 * 179.71360 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7439 -0.1632 2.1374 6 6 3.5429 -0.8182 1.1948 7 8 4.1114 -0.8320 0.1236 8 7 4.2553 -0.8894 2.3366 9 6 3.7403 -0.7728 3.7137 10 6 4.7200 -1.5306 4.6289 11 6 5.8306 -2.0490 3.6863 12 6 5.5624 -3.4992 3.2791 13 6 7.2051 -1.9188 4.3454 14 7 7.2415 -2.7313 5.5637 15 6 8.3779 -2.7711 6.3266 16 1 9.2473 -2.2031 6.0303 17 6 8.4125 -3.5415 7.4808 18 7 7.3531 -4.2342 7.8417 19 14 9.9630 -3.5963 8.5211 20 1 9.9136 -2.5175 9.5404 21 1 10.0579 -4.9140 9.1993 22 1 11.1503 -3.4010 7.6507 23 6 5.7147 -1.1074 2.4655 24 6 1.4491 -2.1064 1.3060 25 6 0.6628 -2.4907 2.3816 26 6 0.1397 -3.7745 2.3911 27 6 0.4167 -4.6226 1.3354 28 7 1.1639 -4.2210 0.3259 29 6 1.6825 -3.0091 0.2861 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 3.1261 1.4439 -0.0928 35 1 1.6029 1.9824 -0.8400 36 1 1.7544 1.9289 0.9327 37 1 3.6956 0.2765 4.0058 38 1 2.7476 -1.2184 3.7778 39 1 5.1406 -0.8560 5.3745 40 1 4.2149 -2.3647 5.1160 41 1 4.5932 -3.5645 2.7846 42 1 6.3423 -3.8348 2.5955 43 1 5.5607 -4.1315 4.1669 44 1 7.9737 -2.2652 3.6545 45 1 7.3889 -0.8748 4.5993 46 1 6.4604 -3.2413 5.8301 47 1 7.3774 -4.7728 8.6480 48 1 6.1123 -1.5876 1.5713 49 1 6.2287 -0.1658 2.6585 50 1 0.4628 -1.8062 3.1926 51 1 -0.4772 -4.1075 3.2127 52 1 0.0134 -5.6244 1.3354 53 1 2.2935 -2.7173 -0.5554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500388033.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:16 Heat of formation + Delta-G solvation = -19.134619 kcal Electronic energy + Delta-G solvation = -31677.433633 eV Core-core repulsion = 27740.901686 eV Total energy + Delta-G solvation = -3936.531946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.98707 -40.81930 -39.47424 -37.01161 -36.47110 -34.36657 -33.50820 -32.50209 -32.00539 -30.64677 -29.16629 -27.94648 -27.79242 -26.85939 -24.67178 -24.53194 -23.99444 -23.43370 -21.45951 -20.36229 -19.74574 -19.18577 -18.22937 -18.13388 -17.21339 -17.00193 -16.70250 -16.57456 -16.31792 -15.62555 -15.46503 -15.22493 -15.08532 -15.04237 -14.70757 -14.55951 -14.31644 -14.09485 -13.97601 -13.76763 -13.59541 -13.51729 -13.23096 -13.04069 -13.01395 -12.88284 -12.86024 -12.80713 -12.48670 -12.14897 -12.10524 -12.06676 -11.86584 -11.70502 -11.60203 -11.55359 -11.42829 -11.08661 -10.91954 -10.64436 -10.40515 -9.89178 -9.70362 -8.96020 -7.93162 -5.20396 0.09400 0.33391 1.48743 1.49528 1.54611 1.57864 1.90575 2.57415 2.81725 3.30987 3.41047 3.44002 3.61141 3.64442 3.67787 3.73389 3.84216 3.95746 4.04792 4.08536 4.20056 4.21350 4.26149 4.31625 4.34456 4.38049 4.49803 4.59743 4.64397 4.68055 4.68812 4.76216 4.80592 4.81715 4.83444 4.95868 4.98637 4.99706 5.02132 5.03293 5.11786 5.17942 5.22027 5.25002 5.29035 5.34120 5.38844 5.42027 5.45303 5.52274 5.75584 6.29394 6.53321 7.01089 7.08535 7.37029 8.12210 8.37282 9.30181 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015365 B = 0.002728 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.859052 B =10259.607166 C =11243.717096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.045 4.045 5 H 0.126 0.874 6 C 0.539 3.461 7 O -0.575 6.575 8 N -0.614 5.614 9 C 0.105 3.895 10 C -0.115 4.115 11 C -0.071 4.071 12 C -0.115 4.115 13 C 0.169 3.831 14 N -0.736 5.736 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.072 4.072 18 N -0.966 5.966 19 Si 0.969 3.031 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.274 1.274 23 C 0.121 3.879 24 C -0.123 4.123 25 C -0.065 4.065 26 C -0.162 4.162 27 C 0.081 3.919 28 N -0.513 5.513 29 C 0.092 3.908 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.013 0.987 45 H 0.029 0.971 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.168 0.832 51 H 0.168 0.832 52 H 0.174 0.826 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.448 9.707 -12.009 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 C -0.203 4.203 4 C -0.067 4.067 5 H 0.144 0.856 6 C 0.329 3.671 7 O -0.454 6.454 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.153 4.153 11 C -0.072 4.072 12 C -0.173 4.173 13 C 0.042 3.958 14 N -0.379 5.379 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.264 4.264 18 N -0.617 5.617 19 Si 0.799 3.201 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.199 1.199 23 C -0.002 4.002 24 C -0.126 4.126 25 C -0.091 4.091 26 C -0.182 4.182 27 C -0.075 4.075 28 N -0.222 5.222 29 C -0.065 4.065 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.031 0.969 45 H 0.047 0.953 46 H 0.211 0.789 47 H 0.059 0.941 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.185 0.815 51 H 0.185 0.815 52 H 0.191 0.809 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.868 9.182 -13.327 25.625 hybrid contribution 0.997 -0.222 1.288 1.644 sum -18.871 8.959 -12.039 24.110 Atomic orbital electron populations 1.21780 0.92844 1.01657 1.03156 1.20971 0.96888 0.96173 0.95362 1.21836 1.00313 0.95034 1.03105 1.20352 0.89018 0.94122 1.03189 0.85577 1.20530 0.89788 0.74905 0.81916 1.90681 1.72959 1.52088 1.29693 1.48845 1.08580 1.70664 1.06575 1.22323 0.98354 1.01750 0.79303 1.22451 0.95318 1.00374 0.97151 1.21601 0.95468 0.95222 0.94905 1.21536 1.00202 0.95156 1.00369 1.20682 0.93703 0.94128 0.87314 1.42450 1.14301 1.55807 1.25380 1.19595 0.92961 1.22108 1.02788 0.90946 1.25465 1.00361 1.00409 1.00170 1.69796 1.30225 1.35073 1.26613 0.85206 0.79692 0.76438 0.78811 1.21285 1.22376 1.19867 1.22297 0.81672 0.98964 0.97280 1.20361 1.00144 0.95504 0.96559 1.21890 0.93482 0.96925 0.96805 1.22505 1.01071 0.94207 1.00397 1.23283 0.93730 1.01114 0.89406 1.67681 1.09850 1.17081 1.27620 1.22554 0.96735 0.89179 0.98001 0.90762 0.91663 0.93551 0.92097 0.94476 0.91285 0.91033 0.88890 0.88865 0.90509 0.91067 0.93209 0.93726 0.93537 0.96881 0.95292 0.78947 0.94053 0.91435 0.89779 0.81467 0.81476 0.80896 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.88 71.98 0.64 -1.06 16 2 C -0.07 -1.26 1.96 -10.79 -0.02 -1.28 16 3 C -0.15 -2.28 8.90 71.98 0.64 -1.64 16 4 C -0.05 -0.78 1.38 -12.29 -0.02 -0.80 16 5 H 0.13 1.46 6.97 -2.39 -0.02 1.44 16 6 C 0.54 13.41 5.88 87.65 0.52 13.93 16 7 O -0.57 -18.68 15.57 -3.04 -0.05 -18.73 16 8 N -0.61 -14.62 3.22 -810.07 -2.61 -17.23 16 9 C 0.10 1.97 6.47 86.53 0.56 2.53 16 10 C -0.11 -3.02 5.52 31.49 0.17 -2.84 16 11 C -0.07 -2.17 0.64 -51.09 -0.03 -2.20 16 12 C -0.12 -3.83 8.29 71.98 0.60 -3.23 16 13 C 0.17 6.49 5.09 86.38 0.44 6.93 16 14 N -0.74 -35.81 5.15 -343.48 -1.77 -37.58 16 15 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 16 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 17 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 18 N -0.97 -57.62 13.06 21.65 0.28 -57.33 16 19 Si 0.97 45.55 29.55 68.60 2.03 47.57 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C 0.12 3.33 5.95 86.61 0.52 3.85 16 24 C -0.12 -2.27 3.30 -19.77 -0.07 -2.34 16 25 C -0.07 -0.89 9.43 22.47 0.21 -0.68 16 26 C -0.16 -2.23 10.11 22.36 0.23 -2.00 16 27 C 0.08 1.49 11.18 84.68 0.95 2.44 16 28 N -0.51 -12.80 10.36 -195.84 -2.03 -14.83 16 29 C 0.09 2.23 10.04 84.67 0.85 3.08 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.67 7.08 -2.39 -0.02 0.65 16 33 H 0.06 1.33 7.13 -2.38 -0.02 1.31 16 34 H 0.04 0.77 7.05 -2.39 -0.02 0.76 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.09 1.33 7.00 -2.39 -0.02 1.31 16 39 H 0.08 2.18 7.85 -2.39 -0.02 2.16 16 40 H 0.07 1.98 7.86 -2.39 -0.02 1.96 16 41 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.74 7.11 -2.39 -0.02 1.73 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 46 H 0.38 19.33 6.38 -92.70 -0.59 18.74 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 48 H 0.07 2.07 7.81 -2.39 -0.02 2.05 16 49 H 0.08 2.15 8.03 -2.39 -0.02 2.13 16 50 H 0.17 1.16 8.00 -2.91 -0.02 1.14 16 51 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 52 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 53 H 0.13 3.66 7.58 -2.91 -0.02 3.64 16 Total: -1.00 -71.33 418.06 3.63 -67.70 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.29 Total: 31.72 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 7.48 Total: -1.29 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -6.13 Total: -126.97 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.33 3.63 -67.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500388033.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.568 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds