Wall clock time and date at job start Wed Apr 1 2020 03:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46754 * 2 1 4 4 C 1.52998 * 109.47399 * 120.00388 * 2 1 3 5 5 H 1.09006 * 109.46998 * 301.49305 * 4 2 1 6 6 C 1.50694 * 109.47437 * 61.49652 * 4 2 1 7 7 O 1.21287 * 119.99828 * 36.48924 * 6 4 2 8 8 N 1.34778 * 120.00099 * 216.48886 * 6 4 2 9 9 C 1.48111 * 127.03541 * 354.69384 * 8 6 4 10 10 C 1.54596 * 103.42255 * 219.28464 * 9 8 6 11 11 C 1.54620 * 102.91126 * 322.86781 * 10 9 8 12 12 C 1.52996 * 110.32405 * 262.80443 * 11 10 9 13 13 C 1.53003 * 110.32876 * 140.59086 * 11 10 9 14 14 N 1.46506 * 109.46879 * 64.37493 * 13 11 10 15 15 C 1.36939 * 119.99348 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00288 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99385 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99630 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47435 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47137 * 120.00405 * 19 17 15 22 22 H 1.48512 * 109.47013 * 240.00314 * 19 17 15 23 23 C 1.47487 * 127.02972 * 175.00628 * 8 6 4 24 24 C 1.50700 * 109.47022 * 181.50095 * 4 2 1 25 25 C 1.38666 * 120.42012 * 119.97941 * 24 4 2 26 26 C 1.38638 * 118.42058 * 180.02562 * 25 24 4 27 27 C 1.38220 * 119.16017 * 359.97438 * 26 25 24 28 28 N 1.31857 * 120.76242 * 0.02562 * 27 26 25 29 29 C 1.31880 * 121.72739 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46940 * 303.55346 * 1 2 3 31 31 H 1.08997 * 109.47208 * 63.55995 * 1 2 3 32 32 H 1.09005 * 109.46504 * 183.56087 * 1 2 3 33 33 H 1.09000 * 109.47116 * 240.00526 * 2 1 3 34 34 H 1.09006 * 109.46721 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46960 * 300.00244 * 3 2 1 36 36 H 1.09000 * 109.46879 * 60.00381 * 3 2 1 37 37 H 1.09003 * 110.66002 * 337.76141 * 9 8 6 38 38 H 1.08993 * 110.66380 * 100.88421 * 9 8 6 39 39 H 1.08992 * 110.83837 * 204.44208 * 10 9 8 40 40 H 1.09008 * 110.73052 * 81.23844 * 10 9 8 41 41 H 1.09005 * 109.47375 * 175.62064 * 12 11 10 42 42 H 1.09006 * 109.47422 * 295.62066 * 12 11 10 43 43 H 1.08999 * 109.47150 * 55.62274 * 12 11 10 44 44 H 1.09000 * 109.47033 * 184.37780 * 13 11 10 45 45 H 1.08999 * 109.47168 * 304.38025 * 13 11 10 46 46 H 0.96998 * 119.99981 * 0.02562 * 14 13 11 47 47 H 0.97001 * 119.99736 * 179.97438 * 18 17 15 48 48 H 1.09002 * 109.91520 * 273.87516 * 23 8 6 49 49 H 1.08998 * 109.91674 * 35.15795 * 23 8 6 50 50 H 1.08006 * 120.79147 * 0.03879 * 25 24 4 51 51 H 1.08003 * 120.41491 * 180.02562 * 26 25 24 52 52 H 1.07998 * 119.61707 * 180.02562 * 27 26 25 53 53 H 1.08002 * 119.61803 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6551 -0.2232 2.1390 6 6 1.5684 -2.1524 1.2307 7 8 1.5040 -2.7562 0.1808 8 7 1.2181 -2.7614 2.3809 9 6 1.3381 -2.2147 3.7522 10 6 1.7916 -3.4347 4.5865 11 6 1.0074 -4.6027 3.9450 12 6 -0.2605 -4.8965 4.7493 13 6 1.8872 -5.8517 3.8625 14 7 2.2227 -6.3029 5.2154 15 6 3.0063 -7.4119 5.3925 16 1 3.3774 -7.9535 4.5351 17 6 3.3247 -7.8391 6.6744 18 7 2.8729 -7.1787 7.7194 19 14 4.3942 -9.3514 6.9161 20 1 4.7703 -9.9086 5.5920 21 1 5.6225 -8.9751 7.6612 22 1 3.6407 -10.3725 7.6875 23 6 0.6427 -4.1109 2.5320 24 6 3.5466 -0.6891 1.2678 25 6 4.2231 -0.0853 2.3169 26 6 5.6092 -0.0790 2.2917 27 6 6.2662 -0.6711 1.2295 28 7 5.5899 -1.2363 0.2488 29 6 4.2714 -1.2610 0.2397 30 1 -0.3633 0.5680 0.8564 31 1 -0.3633 0.4576 -0.9201 32 1 -0.3632 -1.0258 0.0638 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 2.0889 -1.4253 3.7872 38 1 0.3748 -1.8467 4.1052 39 1 1.5148 -3.3129 5.6336 40 1 2.8660 -3.5912 4.4885 41 1 -0.8412 -5.6678 4.2433 42 1 0.0135 -5.2432 5.7458 43 1 -0.8571 -3.9880 4.8319 44 1 1.3485 -6.6416 3.3391 45 1 2.8031 -5.6159 3.3207 46 1 1.8891 -5.8166 5.9855 47 1 3.0950 -7.4775 8.6151 48 1 -0.4409 -4.0670 2.4224 49 1 1.0671 -4.7813 1.7846 50 1 3.6829 0.3692 3.1344 51 1 6.1686 0.3820 3.0924 52 1 7.3458 -0.6709 1.2026 53 1 3.7520 -1.7336 -0.5809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500388034.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:21 Heat of formation + Delta-G solvation = -19.974533 kcal Electronic energy + Delta-G solvation = -31587.840483 eV Core-core repulsion = 27651.272115 eV Total energy + Delta-G solvation = -3936.568368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.98103 -40.83798 -39.49684 -37.02858 -36.50166 -34.41156 -33.53927 -32.50863 -32.10823 -30.57889 -29.14659 -27.94114 -27.68985 -26.84410 -24.71053 -24.63873 -23.96091 -23.45263 -21.54252 -20.30033 -19.80626 -19.20275 -18.22265 -18.15677 -17.30684 -16.92025 -16.78617 -16.61509 -16.22742 -15.80289 -15.49079 -15.20118 -15.14416 -14.98282 -14.62423 -14.55623 -14.30919 -14.15747 -14.00026 -13.59644 -13.52557 -13.49716 -13.19722 -13.08170 -13.01785 -12.93701 -12.87227 -12.79166 -12.61365 -12.17369 -12.12687 -12.07918 -11.86674 -11.69643 -11.61442 -11.50962 -11.39775 -11.08324 -10.97073 -10.65284 -10.41764 -9.91299 -9.73730 -9.00665 -7.97569 -5.24875 0.07844 0.32193 1.44960 1.45492 1.54441 1.55409 1.91014 2.53441 2.80457 3.30827 3.36098 3.42425 3.61646 3.65557 3.66926 3.75329 3.80953 3.94356 4.03798 4.07705 4.19777 4.20912 4.26619 4.32203 4.36822 4.41383 4.47552 4.61943 4.62807 4.67668 4.69909 4.77369 4.80817 4.83075 4.88180 4.89105 4.98073 4.99747 5.00731 5.08603 5.16307 5.18751 5.23214 5.24146 5.24844 5.37438 5.38782 5.43938 5.46961 5.53096 5.74669 6.25669 6.52284 6.99753 7.08832 7.33339 8.06706 8.35173 9.25560 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.002984 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.367095 B = 9382.327716 C =10683.773154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.043 4.043 5 H 0.129 0.871 6 C 0.536 3.464 7 O -0.579 6.579 8 N -0.618 5.618 9 C 0.105 3.895 10 C -0.116 4.116 11 C -0.071 4.071 12 C -0.124 4.124 13 C 0.168 3.832 14 N -0.732 5.732 15 C -0.249 4.249 16 H 0.064 0.936 17 C -0.066 4.066 18 N -0.962 5.962 19 Si 0.967 3.033 20 H -0.274 1.274 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.121 3.879 24 C -0.127 4.127 25 C -0.065 4.065 26 C -0.164 4.164 27 C 0.080 3.920 28 N -0.517 5.517 29 C 0.091 3.909 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.084 0.916 44 H 0.012 0.988 45 H -0.001 1.001 46 H 0.381 0.619 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.050 0.950 50 H 0.172 0.828 51 H 0.170 0.830 52 H 0.174 0.826 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 24.250 -9.768 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C -0.194 4.194 4 C -0.065 4.065 5 H 0.147 0.853 6 C 0.326 3.674 7 O -0.459 6.459 8 N -0.350 5.350 9 C -0.017 4.017 10 C -0.154 4.154 11 C -0.072 4.072 12 C -0.182 4.182 13 C 0.041 3.959 14 N -0.376 5.376 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.259 4.259 18 N -0.612 5.612 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.218 1.218 22 H -0.217 1.217 23 C -0.003 4.003 24 C -0.130 4.130 25 C -0.091 4.091 26 C -0.183 4.183 27 C -0.077 4.077 28 N -0.226 5.226 29 C -0.066 4.066 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.030 0.970 45 H 0.016 0.984 46 H 0.215 0.785 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.068 0.932 50 H 0.189 0.811 51 H 0.187 0.813 52 H 0.191 0.809 53 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.541 23.446 -11.177 26.214 hybrid contribution 0.341 -1.273 0.906 1.599 sum -3.200 22.173 -10.271 24.645 Atomic orbital electron populations 1.21835 0.93865 1.01195 1.03310 1.20997 0.96606 0.96732 0.95138 1.21773 1.00484 0.93819 1.03313 1.20349 0.91417 0.91290 1.03431 0.85273 1.20616 0.75917 0.89087 0.81740 1.90680 1.55764 1.67602 1.31813 1.48939 1.62174 1.16779 1.07116 1.22754 1.03520 0.96314 0.79091 1.22627 0.99171 0.93469 1.00180 1.21513 0.96490 0.94633 0.94609 1.21733 0.95094 1.02102 0.99226 1.20749 0.94564 0.93718 0.86829 1.42432 1.60640 1.31859 1.02695 1.19576 1.22725 1.03666 0.92087 0.91777 1.25430 1.02921 1.02315 0.95246 1.69779 1.51124 1.42777 0.97527 0.85168 0.78169 0.79455 0.77526 1.19870 1.21756 1.21675 1.22009 0.98692 0.83769 0.95781 1.20418 0.94999 1.00890 0.96651 1.21926 0.94776 0.95367 0.96994 1.22525 0.95290 1.00357 1.00144 1.23307 1.01673 0.92987 0.89723 1.67674 1.09354 1.17208 1.28346 1.22604 0.89847 0.96148 0.97996 0.90503 0.91450 0.94667 0.92322 0.93576 0.91604 0.90476 0.88127 0.87467 0.89038 0.93282 0.92833 0.93511 0.89759 0.97018 0.98351 0.78506 0.93831 0.89444 0.93164 0.81101 0.81298 0.80852 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.02 71.98 0.65 -1.58 16 2 C -0.08 -1.29 2.03 -10.79 -0.02 -1.31 16 3 C -0.14 -1.67 8.93 71.98 0.64 -1.02 16 4 C -0.04 -0.77 1.45 -12.29 -0.02 -0.79 16 5 H 0.13 1.47 6.68 -2.38 -0.02 1.45 16 6 C 0.54 14.05 5.44 87.65 0.48 14.53 16 7 O -0.58 -19.98 15.67 -3.05 -0.05 -20.03 16 8 N -0.62 -15.16 3.29 -810.10 -2.67 -17.83 16 9 C 0.10 1.90 6.58 86.61 0.57 2.47 16 10 C -0.12 -3.11 5.72 31.69 0.18 -2.93 16 11 C -0.07 -2.17 0.67 -51.29 -0.03 -2.20 16 12 C -0.12 -3.45 8.05 71.98 0.58 -2.87 16 13 C 0.17 7.04 4.85 86.38 0.42 7.46 16 14 N -0.73 -36.91 5.12 -343.43 -1.76 -38.66 16 15 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 16 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 17 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 18 N -0.96 -57.47 13.06 21.65 0.28 -57.19 16 19 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 C 0.12 3.39 6.31 86.53 0.55 3.93 16 24 C -0.13 -2.54 3.44 -19.78 -0.07 -2.61 16 25 C -0.06 -0.96 9.81 22.47 0.22 -0.74 16 26 C -0.16 -2.46 10.11 22.36 0.23 -2.23 16 27 C 0.08 1.60 11.18 84.68 0.95 2.55 16 28 N -0.52 -14.04 10.36 -195.85 -2.03 -16.07 16 29 C 0.09 2.40 9.99 84.67 0.85 3.25 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.03 0.71 6.90 -2.38 -0.02 0.70 16 33 H 0.06 1.31 7.13 -2.39 -0.02 1.30 16 34 H 0.05 0.66 7.17 -2.38 -0.02 0.65 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 1.34 7.09 -2.39 -0.02 1.33 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 2.35 7.85 -2.39 -0.02 2.33 16 40 H 0.05 1.61 7.84 -2.38 -0.02 1.59 16 41 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.05 1.57 6.75 -2.38 -0.02 1.55 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.00 -0.06 8.11 -2.39 -0.02 -0.08 16 46 H 0.38 19.60 6.18 -92.71 -0.57 19.02 16 47 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.09 2.11 7.68 -2.39 -0.02 2.09 16 49 H 0.05 1.69 7.55 -2.39 -0.02 1.67 16 50 H 0.17 1.23 8.00 -2.91 -0.02 1.21 16 51 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 52 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 53 H 0.14 4.01 7.08 -2.91 -0.02 3.99 16 Total: -1.00 -75.62 416.85 3.59 -72.03 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.32 Total: 29.94 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 7.47 Total: -0.72 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -6.17 Total: -129.76 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -75.62 3.59 -72.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500388034.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.053 kcal (2) G-P(sol) polarization free energy of solvation -75.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds