Wall clock time and date at job start Wed Apr 1 2020 03:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46980 * 2 1 4 4 C 1.53000 * 109.47256 * 240.00036 * 2 1 3 5 5 N 1.46899 * 109.47188 * 119.99728 * 2 1 3 6 6 C 1.47906 * 110.99775 * 63.44862 * 5 2 1 7 7 C 1.53997 * 107.05353 * 145.84396 * 6 5 2 8 8 C 1.54594 * 105.14124 * 358.77681 * 7 6 5 9 9 F 1.39898 * 110.72375 * 96.58067 * 8 7 6 10 10 C 1.50695 * 110.72035 * 219.68207 * 8 7 6 11 11 O 1.21289 * 119.99784 * 107.42332 * 10 8 7 12 12 N 1.34775 * 120.00607 * 287.42018 * 10 8 7 13 13 C 1.46493 * 120.00530 * 184.70757 * 12 10 8 14 14 C 1.52999 * 109.47103 * 273.02903 * 13 12 10 15 15 O 1.42900 * 109.47354 * 63.57502 * 14 13 12 16 16 C 1.46503 * 119.99719 * 4.70432 * 12 10 8 17 17 C 1.53004 * 109.47287 * 263.48062 * 16 12 10 18 18 N 1.46494 * 109.47391 * 179.97438 * 17 16 12 19 19 C 1.36939 * 120.00323 * 179.72003 * 18 17 16 20 20 H 1.08001 * 119.99575 * 0.27675 * 19 18 17 21 21 C 1.38805 * 120.00039 * 180.27678 * 19 18 17 22 22 N 1.31617 * 120.00255 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99999 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47081 * 89.99732 * 23 21 19 25 25 H 1.48502 * 109.47317 * 209.99849 * 23 21 19 26 26 H 1.48500 * 109.47176 * 330.00219 * 23 21 19 27 27 C 1.48529 * 110.99868 * 180.84517 * 5 2 1 28 28 H 1.09002 * 109.47178 * 299.99898 * 1 2 3 29 29 H 1.09002 * 109.46784 * 60.00372 * 1 2 3 30 30 H 1.09001 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47351 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47276 * 299.99968 * 3 2 1 33 33 H 1.08999 * 109.46920 * 59.99541 * 3 2 1 34 34 H 1.08996 * 109.47210 * 305.93293 * 4 2 1 35 35 H 1.08995 * 109.47253 * 65.93043 * 4 2 1 36 36 H 1.08998 * 109.47217 * 185.93042 * 4 2 1 37 37 H 1.09002 * 109.91475 * 26.49508 * 6 5 2 38 38 H 1.09004 * 109.91800 * 265.19752 * 6 5 2 39 39 H 1.08998 * 110.30640 * 239.85718 * 7 6 5 40 40 H 1.08999 * 110.30419 * 117.69869 * 7 6 5 41 41 H 1.08999 * 109.47538 * 33.02366 * 13 12 10 42 42 H 1.08997 * 109.47462 * 153.02644 * 13 12 10 43 43 H 1.09003 * 109.47619 * 183.58278 * 14 13 12 44 44 H 1.09002 * 109.46924 * 303.58152 * 14 13 12 45 45 H 0.96698 * 114.00301 * 180.02562 * 15 14 13 46 46 H 1.08997 * 109.47645 * 143.47807 * 16 12 10 47 47 H 1.09000 * 109.47237 * 23.47644 * 16 12 10 48 48 H 1.08997 * 109.46986 * 59.99342 * 17 16 12 49 49 H 1.09000 * 109.46640 * 299.99947 * 17 16 12 50 50 H 0.97003 * 119.99976 * 0.02562 * 18 17 16 51 51 H 0.97003 * 119.99875 * 180.02562 * 22 21 19 52 52 H 1.09004 * 110.66536 * 81.84903 * 27 5 2 53 53 H 1.08996 * 110.66868 * 318.71262 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0197 -0.6924 1.1995 6 6 1.6145 -2.1149 1.1928 7 6 2.7510 -2.9114 1.8602 8 6 3.8283 -1.8600 2.2122 9 9 3.7042 -1.4508 3.5442 10 6 5.2092 -2.4031 1.9497 11 8 5.8512 -1.9965 1.0044 12 7 5.7310 -3.3407 2.7654 13 6 7.1106 -3.7938 2.5724 14 6 7.1345 -4.9368 1.5557 15 8 6.6835 -4.4561 0.2878 16 6 4.9183 -3.9066 3.8450 17 6 5.2226 -3.1710 5.1517 18 7 4.4096 -3.7364 6.2312 19 6 4.5166 -3.2380 7.5021 20 1 5.1971 -2.4250 7.7077 21 6 3.7504 -3.7776 8.5261 22 7 2.9207 -4.7681 8.2754 23 14 3.8959 -3.0972 10.2597 24 1 2.9168 -1.9958 10.4429 25 1 3.6159 -4.1767 11.2403 26 1 5.2706 -2.5780 10.4739 27 6 3.5043 -0.6945 1.2440 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.5926 -1.7136 -1.3040 35 1 1.7661 -0.1498 -2.1360 36 1 3.1249 -0.8141 -1.1977 37 1 1.4744 -2.4563 0.1672 38 1 0.6911 -2.2406 1.7583 39 1 3.1543 -3.6487 1.1662 40 1 2.3896 -3.4003 2.7649 41 1 7.7166 -2.9665 2.2032 42 1 7.5143 -4.1441 3.5224 43 1 8.1518 -5.3165 1.4594 44 1 6.4782 -5.7384 1.8946 45 1 6.6722 -5.1289 -0.4067 46 1 5.1534 -4.9646 3.9605 47 1 3.8618 -3.7936 3.6021 48 1 4.9875 -2.1129 5.0362 49 1 6.2791 -3.2840 5.3946 50 1 3.7986 -4.4669 6.0466 51 1 2.3850 -5.1449 8.9909 52 1 3.8787 0.2497 1.6397 53 1 3.9186 -0.8896 0.2549 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501493456.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:57 Heat of formation + Delta-G solvation = -119.317589 kcal Electronic energy + Delta-G solvation = -33448.907156 eV Core-core repulsion = 29077.261726 eV Total energy + Delta-G solvation = -4371.645431 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 345.221 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.93576 -41.35469 -40.30475 -38.01958 -37.30048 -35.85672 -35.78370 -33.24900 -31.45458 -30.58986 -30.09176 -28.95258 -28.30199 -27.81384 -25.70247 -24.86164 -23.51767 -23.19409 -22.29270 -20.38714 -19.85583 -19.22958 -18.51773 -18.28110 -17.90524 -17.28647 -16.98129 -16.45411 -16.21169 -16.00299 -15.80381 -15.70470 -15.29250 -15.20236 -14.98762 -14.92242 -14.81340 -14.70463 -14.46799 -14.09726 -13.75169 -13.64176 -13.24395 -13.10817 -12.99762 -12.91434 -12.90417 -12.78946 -12.74181 -12.59570 -12.47815 -12.31611 -12.20426 -12.11147 -12.07787 -11.94619 -11.82687 -11.77540 -11.52085 -10.96271 -10.91296 -10.69360 -9.78585 -9.37079 -8.98115 -7.93576 -5.21992 1.33057 1.48597 1.50623 1.58212 1.72165 2.56764 2.73553 3.09447 3.15109 3.23142 3.40233 3.46657 3.59618 3.86953 3.91355 3.98997 4.05366 4.10178 4.13205 4.18322 4.23284 4.25043 4.34567 4.45137 4.49015 4.53456 4.56087 4.62475 4.65983 4.68605 4.76074 4.80255 4.86171 4.88393 4.89998 4.95766 4.99678 5.03201 5.06445 5.20232 5.23498 5.31982 5.44718 5.45642 5.51732 5.80056 6.07643 6.18731 6.29097 6.93721 6.96054 7.35755 8.07492 8.33451 9.29478 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.003658 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.055585 B = 7653.436219 C = 9761.594177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.088 3.912 3 C -0.139 4.139 4 C -0.181 4.181 5 N -0.514 5.514 6 C 0.035 3.965 7 C -0.143 4.143 8 C 0.092 3.908 9 F -0.188 7.188 10 C 0.512 3.488 11 O -0.530 6.530 12 N -0.590 5.590 13 C 0.106 3.894 14 C 0.064 3.936 15 O -0.579 6.579 16 C 0.107 3.893 17 C 0.139 3.861 18 N -0.736 5.736 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.068 4.068 22 N -0.964 5.964 23 Si 0.969 3.031 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.272 1.272 27 C 0.039 3.961 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.388 0.612 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.023 0.977 49 H 0.018 0.982 50 H 0.377 0.623 51 H 0.252 0.748 52 H 0.083 0.917 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 2.697 -22.888 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.001 4.001 3 C -0.197 4.197 4 C -0.240 4.240 5 N -0.238 5.238 6 C -0.092 4.092 7 C -0.181 4.181 8 C 0.070 3.930 9 F -0.168 7.168 10 C 0.297 3.703 11 O -0.407 6.407 12 N -0.321 5.321 13 C -0.016 4.016 14 C -0.014 4.014 15 O -0.385 6.385 16 C -0.016 4.016 17 C 0.012 3.988 18 N -0.380 5.380 19 C -0.376 4.376 20 H 0.087 0.913 21 C -0.261 4.261 22 N -0.615 5.615 23 Si 0.798 3.202 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.197 1.197 27 C -0.089 4.089 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.236 0.764 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.040 0.960 49 H 0.036 0.964 50 H 0.209 0.791 51 H 0.061 0.939 52 H 0.102 0.898 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.692 3.875 -22.458 22.801 hybrid contribution 0.307 -0.896 0.563 1.101 sum 0.999 2.979 -21.896 22.120 Atomic orbital electron populations 1.21814 0.92220 1.02450 1.02567 1.21368 0.96586 0.94679 0.87465 1.21878 1.00666 0.94432 1.02707 1.22501 1.01080 1.01590 0.98797 1.65087 1.06934 1.13098 1.38712 1.22988 0.97988 0.87103 1.01134 1.23112 0.94621 0.97231 1.03131 1.22025 0.93969 0.97609 0.79446 1.92958 1.96689 1.91829 1.35332 1.20593 0.87732 0.79465 0.82529 1.90691 1.61328 1.59374 1.29271 1.47749 1.14374 1.39675 1.30339 1.21800 0.81744 0.98153 0.99889 1.22577 0.99666 0.95151 0.84025 1.86691 1.89739 1.41430 1.20687 1.21848 0.96110 0.98247 0.85432 1.21157 0.93857 0.96398 0.87402 1.42260 1.48989 1.41945 1.04778 1.19513 1.18592 1.13012 0.86440 0.91327 1.25460 0.99475 0.99412 1.01720 1.69785 1.29999 1.28920 1.32784 0.85211 0.77852 0.77021 0.80104 1.21640 1.21815 1.19669 1.23507 0.90105 0.96738 0.98553 0.92637 0.90434 0.92268 0.93391 0.90239 0.92541 0.91554 0.90229 0.93161 0.90468 0.89315 0.88504 0.88884 0.90787 0.87158 0.90418 0.92758 0.76416 0.88779 0.89477 0.95952 0.96388 0.79104 0.93907 0.89849 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.43 71.98 0.61 -1.50 16 2 C 0.09 1.64 0.70 3.53 0.00 1.65 16 3 C -0.14 -2.52 8.31 71.98 0.60 -1.92 16 4 C -0.18 -2.97 7.82 71.98 0.56 -2.40 16 5 N -0.51 -12.34 5.09 -833.64 -4.24 -16.59 16 6 C 0.04 0.76 5.25 86.45 0.45 1.22 16 7 C -0.14 -3.54 5.23 31.47 0.16 -3.37 16 8 C 0.09 2.76 1.05 -10.34 -0.01 2.74 16 9 F -0.19 -7.00 13.32 44.97 0.60 -6.40 16 10 C 0.51 16.16 6.32 87.66 0.55 16.71 16 11 O -0.53 -18.63 14.02 13.47 0.19 -18.44 16 12 N -0.59 -17.08 2.47 -821.83 -2.03 -19.11 16 13 C 0.11 2.57 5.90 86.38 0.51 3.08 16 14 C 0.06 1.22 7.40 71.98 0.53 1.76 16 15 O -0.58 -12.89 11.86 -132.45 -1.57 -14.47 16 16 C 0.11 3.35 4.98 86.38 0.43 3.78 16 17 C 0.14 5.67 6.29 86.38 0.54 6.21 16 18 N -0.74 -37.14 5.60 -343.46 -1.92 -39.07 16 19 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.96 -58.10 13.06 21.65 0.28 -57.82 16 23 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 C 0.04 1.07 4.16 86.65 0.36 1.43 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.89 7.27 -2.39 -0.02 0.88 16 31 H 0.05 0.94 6.91 -2.39 -0.02 0.92 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.01 6.13 -2.39 -0.01 0.99 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 0.98 5.85 -2.39 -0.01 0.96 16 37 H 0.08 1.38 5.34 -2.39 -0.01 1.36 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 2.16 7.84 -2.39 -0.02 2.14 16 40 H 0.09 2.46 6.65 -2.39 -0.02 2.44 16 41 H 0.07 2.00 7.59 -2.39 -0.02 1.98 16 42 H 0.11 2.34 8.05 -2.39 -0.02 2.32 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.39 4.96 9.12 -74.06 -0.68 4.29 16 46 H 0.09 2.66 8.12 -2.39 -0.02 2.64 16 47 H 0.09 2.77 4.02 -2.39 -0.01 2.76 16 48 H 0.02 1.00 6.04 -2.39 -0.01 0.99 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.38 19.67 7.67 -92.71 -0.71 18.95 16 51 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 52 H 0.08 2.42 7.66 -2.38 -0.02 2.40 16 53 H 0.08 2.25 4.86 -2.39 -0.01 2.24 16 Total: -1.00 -72.12 402.14 -0.51 -72.63 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.45 Total: 37.83 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.61 Total: 13.04 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -7.91 Total: -132.59 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.38 Total: -32.90 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.60 Total: -6.40 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -72.12 -0.51 -72.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501493456.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.687 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds