Wall clock time and date at job start Wed Apr 1 2020 03:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46945 * 2 1 4 4 C 1.53000 * 109.47057 * 119.99709 * 2 1 3 5 5 H 1.09003 * 109.47430 * 300.00153 * 4 2 1 6 6 C 1.53000 * 109.47239 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47138 * 174.99958 * 6 4 2 8 8 N 1.46503 * 109.46984 * 180.02562 * 7 6 4 9 9 C 1.46499 * 119.99911 * 270.00445 * 8 7 6 10 10 C 1.34772 * 119.99937 * 90.00165 * 8 7 6 11 11 O 1.21278 * 120.00455 * 4.31062 * 10 8 7 12 12 C 1.50707 * 120.00089 * 184.31561 * 10 8 7 13 13 H 1.09007 * 110.25351 * 327.38964 * 12 10 8 14 14 C 1.54331 * 110.29389 * 205.34269 * 12 10 8 15 15 C 1.54368 * 102.38932 * 267.39835 * 14 12 10 16 16 C 1.51229 * 105.11756 * 333.71024 * 15 14 12 17 17 C 1.38746 * 130.69212 * 197.16018 * 16 15 14 18 18 C 1.38572 * 118.55259 * 179.97438 * 17 16 15 19 19 C 1.38233 * 118.99440 * 0.26049 * 18 17 16 20 20 N 1.31692 * 120.79598 * 359.45537 * 19 18 17 21 21 C 1.32294 * 122.03111 * 0.56183 * 20 19 18 22 22 N 1.46507 * 109.46992 * 60.00071 * 4 2 1 23 23 C 1.36939 * 119.99880 * 274.99378 * 22 4 2 24 24 H 1.07997 * 120.00036 * 0.02562 * 23 22 4 25 25 C 1.38809 * 119.99937 * 179.97438 * 23 22 4 26 26 N 1.31626 * 120.00102 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00123 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47113 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47110 * 120.00469 * 27 25 23 30 30 H 1.48501 * 109.47657 * 240.00780 * 27 25 23 31 31 H 1.09003 * 109.47125 * 299.99951 * 1 2 3 32 32 H 1.08994 * 109.47275 * 60.00065 * 1 2 3 33 33 H 1.08998 * 109.47388 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46560 * 239.99378 * 2 1 3 35 35 H 1.09005 * 109.46941 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46974 * 299.99704 * 3 2 1 37 37 H 1.08999 * 109.47815 * 59.99754 * 3 2 1 38 38 H 1.09001 * 109.46852 * 54.99914 * 6 4 2 39 39 H 1.09001 * 109.47219 * 295.00269 * 6 4 2 40 40 H 1.09000 * 109.46871 * 60.00555 * 7 6 4 41 41 H 1.09001 * 109.47319 * 300.00249 * 7 6 4 42 42 H 1.09004 * 109.46760 * 264.55760 * 9 8 7 43 43 H 1.09000 * 109.47253 * 24.55380 * 9 8 7 44 44 H 1.09000 * 109.47409 * 144.56098 * 9 8 7 45 45 H 1.09002 * 110.82315 * 149.17373 * 14 12 10 46 46 H 1.08998 * 110.99800 * 25.69930 * 14 12 10 47 47 H 1.09004 * 110.31742 * 214.80280 * 15 14 12 48 48 H 1.09000 * 110.40180 * 92.66335 * 15 14 12 49 49 H 1.07993 * 120.72053 * 359.95300 * 17 16 15 50 50 H 1.07999 * 120.50567 * 179.97438 * 18 17 16 51 51 H 1.07994 * 119.60153 * 179.71219 * 19 18 17 52 52 H 0.96999 * 120.00261 * 95.00411 * 22 4 2 53 53 H 0.97000 * 119.99591 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5700 -0.7218 1.2490 7 6 4.0800 -1.3313 2.5564 8 7 5.5450 -1.3313 2.5563 9 6 6.2775 -2.4811 2.0201 10 6 6.2189 -0.2735 3.0495 11 8 5.6151 0.6438 3.5643 12 6 7.7227 -0.2302 2.9613 13 1 8.1342 -1.2369 3.0353 14 6 8.2988 0.6669 4.0771 15 6 8.3979 2.0405 3.3796 16 6 8.5411 1.7259 1.9074 17 6 8.9766 2.5143 0.8520 18 6 9.0086 1.9618 -0.4183 19 6 8.6020 0.6518 -0.5897 20 7 8.1996 -0.0690 0.4364 21 6 8.1546 0.4219 1.6641 22 7 1.5516 -2.1025 1.2493 23 6 0.3101 -2.3897 1.7506 24 1 -0.3092 -1.5980 2.1455 25 6 -0.1528 -3.6983 1.7501 26 7 0.6017 -4.6632 1.2683 27 14 -1.8467 -4.0901 2.4333 28 1 -2.4897 -2.8392 2.9099 29 1 -2.6814 -4.7001 1.3673 30 1 -1.7159 -5.0422 3.5654 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8899 35 1 3.1300 1.4424 -0.0005 36 1 1.6766 1.9562 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 3.9337 0.3019 1.1591 39 1 3.9330 -1.3115 0.4072 40 1 3.7163 -2.3549 2.6461 41 1 3.7170 -0.7416 3.3981 42 1 6.5436 -3.1545 2.8349 43 1 5.6497 -3.0094 1.3026 44 1 7.1843 -2.1351 1.5239 45 1 9.2840 0.3171 4.3856 46 1 7.6215 0.7133 4.9297 47 1 9.2723 2.5844 3.7371 48 1 7.4931 2.6223 3.5559 49 1 9.2837 3.5365 1.0171 50 1 9.3417 2.5472 -1.2626 51 1 8.6185 0.2128 -1.5762 52 1 2.1077 -2.8135 0.8944 53 1 0.2783 -5.5777 1.2684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506490592.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:04 Heat of formation + Delta-G solvation = -14.498782 kcal Electronic energy + Delta-G solvation = -31460.126576 eV Core-core repulsion = 27523.795655 eV Total energy + Delta-G solvation = -3936.330921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.16124 -40.55127 -38.98524 -37.12620 -36.47434 -34.94338 -33.76813 -32.95140 -31.54423 -30.31563 -29.34075 -28.11062 -27.54245 -26.65334 -24.99115 -24.46548 -23.38827 -22.65854 -21.93864 -20.81685 -19.98081 -19.13613 -18.51175 -17.84449 -17.22973 -16.84993 -16.78255 -16.51495 -15.89783 -15.84262 -15.58959 -15.25474 -15.09184 -14.99390 -14.54941 -14.31431 -14.24796 -14.07913 -13.92367 -13.74026 -13.58092 -13.25409 -13.08974 -13.03051 -12.96859 -12.88043 -12.77173 -12.67193 -12.54832 -12.22410 -12.18074 -12.11374 -11.98894 -11.76042 -11.73528 -11.45653 -11.24791 -11.04444 -10.82536 -10.64798 -10.28825 -9.66229 -9.64719 -8.90745 -7.87450 -5.12689 0.08030 0.33682 1.47142 1.48833 1.49605 1.57048 2.00161 2.59549 2.79632 2.95252 3.41905 3.45059 3.52051 3.79698 3.87033 3.92222 3.95520 4.08789 4.11709 4.16795 4.20833 4.27633 4.30223 4.39665 4.45712 4.47724 4.60366 4.63360 4.63594 4.67294 4.69633 4.74300 4.82665 4.88232 4.92232 4.95231 5.00494 5.03449 5.06893 5.12252 5.14554 5.17094 5.24833 5.29031 5.31755 5.37541 5.52621 5.58605 5.64064 5.73510 5.77125 6.34413 6.38612 6.99984 7.09970 7.41746 8.14942 8.41387 9.36097 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.002824 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.068384 B = 9911.794178 C =10566.011574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.185 3.815 5 H 0.035 0.965 6 C -0.114 4.114 7 C 0.129 3.871 8 N -0.607 5.607 9 C 0.072 3.928 10 C 0.521 3.479 11 O -0.572 6.572 12 C -0.058 4.058 13 H 0.122 0.878 14 C -0.098 4.098 15 C -0.075 4.075 16 C -0.146 4.146 17 C -0.073 4.073 18 C -0.160 4.160 19 C 0.084 3.916 20 N -0.496 5.496 21 C 0.100 3.900 22 N -0.726 5.726 23 C -0.213 4.213 24 H 0.072 0.928 25 C -0.073 4.073 26 N -0.967 5.967 27 Si 0.957 3.043 28 H -0.270 1.270 29 H -0.297 1.297 30 H -0.297 1.297 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.110 0.890 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.074 0.926 49 H 0.160 0.840 50 H 0.170 0.830 51 H 0.178 0.822 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.727 14.356 -0.956 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.193 4.193 4 C 0.076 3.924 5 H 0.053 0.947 6 C -0.153 4.153 7 C 0.006 3.994 8 N -0.338 5.338 9 C -0.070 4.070 10 C 0.309 3.691 11 O -0.451 6.451 12 C -0.080 4.080 13 H 0.140 0.860 14 C -0.136 4.136 15 C -0.112 4.112 16 C -0.148 4.148 17 C -0.099 4.099 18 C -0.180 4.180 19 C -0.073 4.073 20 N -0.205 5.205 21 C -0.037 4.037 22 N -0.366 5.366 23 C -0.345 4.345 24 H 0.090 0.910 25 C -0.265 4.265 26 N -0.619 5.619 27 Si 0.788 3.212 28 H -0.195 1.195 29 H -0.225 1.225 30 H -0.225 1.225 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.129 0.871 46 H 0.101 0.899 47 H 0.124 0.876 48 H 0.092 0.908 49 H 0.178 0.822 50 H 0.187 0.813 51 H 0.195 0.805 52 H 0.205 0.795 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 21.974 13.974 -0.732 26.052 hybrid contribution -0.987 -0.281 0.091 1.030 sum 20.988 13.693 -0.641 25.068 Atomic orbital electron populations 1.21736 0.95661 1.01769 0.99995 1.21635 0.96190 0.95947 0.98973 1.21799 1.00361 0.95449 1.01673 1.20332 0.91231 0.85516 0.95300 0.94740 1.21962 0.95687 1.00375 0.97266 1.21269 0.78610 1.01664 0.97822 1.47980 1.06686 1.18773 1.60344 1.22035 0.97768 0.87556 0.99611 1.20731 0.90104 0.81335 0.76946 1.90647 1.70878 1.37721 1.45860 1.20816 0.90902 1.03418 0.92851 0.85984 1.22286 1.02444 0.93168 0.95743 1.20985 1.03372 0.98182 0.88682 1.21765 0.99417 0.95379 0.98249 1.21481 0.96122 1.00904 0.91399 1.22481 1.00167 0.96723 0.98601 1.23126 0.94625 0.92012 0.97526 1.66746 1.14323 1.40225 0.99205 1.21282 0.97428 0.93174 0.91831 1.42553 1.17129 1.03443 1.73442 1.19488 0.93258 0.92115 1.29607 0.91013 1.25326 1.01386 0.96073 1.03764 1.69796 1.38235 0.99650 1.54198 0.85301 0.81064 0.77708 0.77167 1.19453 1.22506 1.22487 0.94062 0.92937 0.93022 0.93059 0.93070 0.91913 0.93114 0.91889 0.92499 0.90784 0.92082 0.90947 0.91091 0.89141 0.87138 0.89945 0.87563 0.90775 0.82239 0.81254 0.80493 0.79483 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.26 71.98 0.59 -4.52 16 2 C -0.11 -3.91 2.69 -10.80 -0.03 -3.94 16 3 C -0.14 -4.10 8.85 71.98 0.64 -3.46 16 4 C 0.19 7.54 2.02 44.99 0.09 7.63 16 5 H 0.03 1.50 8.08 -2.39 -0.02 1.48 16 6 C -0.11 -4.13 4.86 30.59 0.15 -3.98 16 7 C 0.13 4.69 5.30 86.38 0.46 5.15 16 8 N -0.61 -18.60 2.87 -846.75 -2.43 -21.04 16 9 C 0.07 1.79 9.80 127.77 1.25 3.04 16 10 C 0.52 15.83 6.77 87.66 0.59 16.42 16 11 O -0.57 -21.02 15.39 -3.02 -0.05 -21.06 16 12 C -0.06 -1.30 2.36 -11.59 -0.03 -1.33 16 13 H 0.12 2.29 6.75 -2.38 -0.02 2.27 16 14 C -0.10 -1.72 6.27 31.51 0.20 -1.53 16 15 C -0.07 -1.29 6.56 30.48 0.20 -1.09 16 16 C -0.15 -2.90 6.16 -19.59 -0.12 -3.02 16 17 C -0.07 -1.13 10.17 22.47 0.23 -0.90 16 18 C -0.16 -2.24 10.12 22.35 0.23 -2.01 16 19 C 0.08 1.53 11.18 84.71 0.95 2.47 16 20 N -0.50 -11.79 9.61 -182.99 -1.76 -13.55 16 21 C 0.10 2.34 6.42 42.72 0.27 2.61 16 22 N -0.73 -35.52 4.45 -322.93 -1.44 -36.96 16 23 C -0.21 -11.46 7.57 84.03 0.64 -10.83 16 24 H 0.07 3.82 7.39 -2.91 -0.02 3.80 16 25 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 26 N -0.97 -58.13 13.06 21.65 0.28 -57.85 16 27 Si 0.96 46.41 29.55 68.60 2.03 48.44 16 28 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 29 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 30 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 2.33 6.01 -2.39 -0.01 2.31 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.52 6.32 -2.38 -0.02 1.51 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 2.27 6.18 -2.39 -0.01 2.26 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 2.95 7.68 -2.39 -0.02 2.93 16 41 H 0.06 2.43 7.37 -2.39 -0.02 2.41 16 42 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.07 1.87 8.03 -2.39 -0.02 1.85 16 44 H 0.09 2.05 5.79 -2.39 -0.01 2.03 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.63 7.49 -2.39 -0.02 1.62 16 47 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 50 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 51 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 52 H 0.37 19.61 7.80 -92.71 -0.72 18.88 16 53 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -70.13 415.92 3.58 -66.55 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: 0.17 Total: 38.43 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 6.78 Total: -2.96 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -5.35 Total: -129.39 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -70.13 3.58 -66.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506490592.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.048 kcal (2) G-P(sol) polarization free energy of solvation -70.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds